Os03g0129200

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Revision as of 12:17, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os03g0129200| Description = Nucleotide binding protein, PINc domain containing protein| Version = NM_001055381.1 GI:115450490 GeneID:4331494| Le...")
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Gene Name

Os03g0129200

Description

Nucleotide binding protein, PINc domain containing protein

Version

NM_001055381.1 GI:115450490 GeneID:4331494

Length

7947 bp

Definition

Oryza sativa Japonica Group Os03g0129200, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:1631841..1639787

Sequence Coding Region

1631841..1632036,1632287..1632352,1632442..1632523,1632606..1632701,1633077..1633182
,1633266..1633325,1633778..1633898,1634593..1634704,1634782..1634881
,1634992..1635046,1635153..1635259,1635462..1635514,1635653..1635778
,1636573..1636729,1636890..1637085,1637581..1637737,1637803..1638043
,1638139..1638269,1638368..1638490,1638593..1638648,1639274..1639431
,1639511..1639648,1639734..1639787

Expression

GEO Profiles:Os03g0129200

Genome Context

<gbrowseImage1> name=NC_008396:1631841..1639787 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:1631841..1639787 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgttgcagagcaagaccttcgtgaagaagacgagggcaggccgcgtccagaaggtggtcagggagcactacctccgcgacgacatctcctgcggcgccgcctcctgctccacctgtggcgcggtcgagcacccgctctccgccgacgcggccgccatcctcgtcgtcgacaccaacgtcgtgctccaccagatcgatttgctggagaatccagcgattgacgatgttgtcctactatcggttgtgttggatgaggtgaagaataaaaacctcgcagtgttcaacaggatcaaggccctgtgttctaacaaggcaaggaggttcttcgtgttcaccaatgagcaccacagggatacatatgtcaaagagatggttggagagagcccgaatgatcgcaacgatagagctattcgtgtggctactcgttggtaccaaagtcatcttggtgagaatgtgaaagttttgctgatcacaaatgatagagataacaaacggaaagctattgaagaaggcattaatgctgagacagtggaatcatatgtacgatctcttgcacagcctggtttgctcgatttagtggttgtttcaactagtggagatgtcacaatggaagatgtagaagatcttagaccgtccaaaaagaaagtaatttacagtgagcacaaacctatgtcagaaattacagctggcctgcggtgtggaatttatcatcaagggaagctccgagttaatcgttacaatccatttgaagcttacgttggaagtgagagcattggtgatgagattgttattcatggccgttcaaacatgaatagggcttttgatggagacatagttgctgttgagctcttgccacaagatcaatggcatgaatcgaagtcatttattgcagacgacgatgaagatgatgaagaagacgtccatttggctccaaatagtgctgatgatgctccacggaaagccaatcccacacaatcaacagctgcatcatcagctgattctgtctctagtcgcccagttggacgtgttgttggtataatcaagcgaaattggaattcgtattgtgggtccttggagccaatgcccatgcctgctggtagtggaggcgttgctcatgctctatttgtgtctaaagatcgacgaatcccaaagattcgaattcaaactagacagcttggcaatcttctggacaaaaggattattgttgcagttgattcatgggatgtcttgtctcgatacccatcaggacattatgttgtcttaatagagaatgatatcaacacaagacctttctctacacaagtccttgcttgtttgccaccattgccatggacattatcacctgaagatcttgctaatcctaatagacaagatttacgccatgtgagagtctttagtgtggatccgcctgatattgctgacgtcactaactttgttcatcctggtactcctcttgatgaggaggcctcacaaaggggcacttctgtatatcttgttggacagcgaattgacatgcttccaaagcctcttactgaagatgtttgttctcttcgtgctgatgttgagagattggcgttctctgtcatttgggaaatgacacctcatgctgatatcatatccacaagatatacaaagagtgttatcaagtcttgcgctgcaatgtcttatgtggaagctcaagcaagaatggatgacagccgtttggtcgatcccctaactgtagacctgcggaacttaaactcgttagcaaagattatgaggcatcggcgttgtgaaagaggggctctaacacttgcttcagcagaagtcaaattcgaaattgatagtgaaacccatgatccgcttgacataggaatatatcaaattcgtgaggcaaatcaaatgattgaagagtttatgttggctgcaaatatctctgtcgctgagaagattttgaagcacttccccttgtgttcattgctaaggcgccatcctagcccaacaaaggagatgcttgagccattactccgaactgcgtcttctgtggggctaaatctggatgtgtcatcctcaaaagcattagcagaatcacttgataatgcaaagaatgatgacccatacttcaacaagcttatcaggattttggcaactagatgcatgacacaggcagtttatttctgtagcggagacttgaccttttctgagtattaccattatggccttgctgcttctctttacacacatttcacctcccctattcgcagatatgcagatgttattgttcataggttgttagctgctgccctagaaattgccaaacttccacccctctttcaggatggtccacaacttacaggcgtagctgacaacttgaattatagacatcgaaatgcccagatggcaagcagagcatcagttgagcttcataccctcatatatttcaggacaaggcggatggacactgaagctagaattgtaaagatcaaggcaaatggtttcatagtatttgtcccaaagtttggcatagaagggcccatctaccttactccaaagggagacaaggggggtgattgggtagtagatgaggtgcaccagagagtaaccaagcccgggacaaacgtcagttacgctgtcctgcagaccgttatgattcatatggaggtggttgagcctcagcctcaccgcccaaagttgcaactcaccctgatatga</cdnaseq>

Protein Sequence

<aaseq>MLQSKTFVKKTRAGRVQKVVREHYLRDDISCGAASCSTCGAVEH PLSADAAAILVVDTNVVLHQIDLLENPAIDDVVLLSVVLDEVKNKNLAVFNRIKALCS NKARRFFVFTNEHHRDTYVKEMVGESPNDRNDRAIRVATRWYQSHLGENVKVLLITND RDNKRKAIEEGINAETVESYVRSLAQPGLLDLVVVSTSGDVTMEDVEDLRPSKKKVIY SEHKPMSEITAGLRCGIYHQGKLRVNRYNPFEAYVGSESIGDEIVIHGRSNMNRAFDG DIVAVELLPQDQWHESKSFIADDDEDDEEDVHLAPNSADDAPRKANPTQSTAASSADS VSSRPVGRVVGIIKRNWNSYCGSLEPMPMPAGSGGVAHALFVSKDRRIPKIRIQTRQL GNLLDKRIIVAVDSWDVLSRYPSGHYVVLIENDINTRPFSTQVLACLPPLPWTLSPED LANPNRQDLRHVRVFSVDPPDIADVTNFVHPGTPLDEEASQRGTSVYLVGQRIDMLPK PLTEDVCSLRADVERLAFSVIWEMTPHADIISTRYTKSVIKSCAAMSYVEAQARMDDS RLVDPLTVDLRNLNSLAKIMRHRRCERGALTLASAEVKFEIDSETHDPLDIGIYQIRE ANQMIEEFMLAANISVAEKILKHFPLCSLLRRHPSPTKEMLEPLLRTASSVGLNLDVS SSKALAESLDNAKNDDPYFNKLIRILATRCMTQAVYFCSGDLTFSEYYHYGLAASLYT HFTSPIRRYADVIVHRLLAAALEIAKLPPLFQDGPQLTGVADNLNYRHRNAQMASRAS VELHTLIYFRTRRMDTEARIVKIKANGFIVFVPKFGIEGPIYLTPKGDKGGDWVVDEV HQRVTKPGTNVSYAVLQTVMIHMEVVEPQPHRPKLQLTLI</aaseq>

Gene Sequence

<dnaseqindica>7752..7947#7436..7501#7265..7346#7087..7182#6606..6711#6463..6522#5890..6010#5084..5195#4907..5006#4742..4796#4529..4635#4274..4326#4010..4135#3059..3215#2703..2898#2051..2207#1745..1985#1519..1649#1298..1420#1140..1195#357..514#140..277#1..54#atgttgcagagcaagaccttcgtgaagaagacgagggcaggccgcgtccagaaggtaactactcggcagcagcatcaccctgcgcgcggcgaaggtgcccccaaaccctagctaacccggagttcccccattcccgcaggtggtcagggagcactacctccgcgacgacatctcctgcggcgccgcctcctgctccacctgtggcgcggtcgagcacccgctctccgccgacgcggccgccatcctcgtcgtcgacaccaacgtcgtgctccaccaggttggcctttcccctcctgttgcctgtagggagtagagctagggattccggaggctgatgttctgagagcttgctgcagatcgatttgctggagaatccagcgattgacgatgttgtcctactatcggttgtgttggatgaggtgaagaataaaaacctcgcagtgttcaacaggatcaaggccctgtgttctaacaaggcaaggaggttcttcgtgttcaccaatgagcaccacaggtgtgcattcgataccttaggatttgctcgatggctattatgatttgttatgtgaatccagtatacagttgctcagttcttatctgaaccaaaacatgtttaaatttatggttaacagaatggggtagagaaaccacctaggttgttaaagaagtatattttagttgctagtactagggagaagatttatctaaaagctctaccctgcatctgatgttccacaacatttcctttttaacagactcagatttatgttgggctaatttgattttgggatttcctaaatccctcttcaaatgtttcttctccaaacagcatatctttggtgtgcatgacagtcggacctcaattttagcactatctgcctgattatatttgcaaaagtctctctatgcatgcactgttgcacatctacactctgcaattttttttaaaatattcttgtcagcaagcttgtatagaccaacagaatttgcaaatttctcgtgataaattatctcttgcaagtacatgtccgtccttatgtttgcgaatttctttaaacacgaagaaaatgagtgcacttccagttccttatgtggtcttcttggtttaaaattacaccattctcttccaaaaaaaacagggatacatatgtcaaagagatggttggagagagcccgaatgatcgcaacgatagaggtactgtaccaaataattctgttagcttgctttatctcatattttgcactactcgaagtacttttgtgtattcttttctcttgattggtcattcatattcagctattcgtgtggctactcgttggtaccaaagtcatcttggtgagaatgtgaaagttttgctgatcacaaatgatagagataacaaacggaaagctattgaagaaggcattaatgctgagacaggtgaaattatggatgttacaaaaatgttagctggatcttttcaaatattggacacattattttttctggtaatcacaacacaatatttctggttccagtggaatcatatgtacgatctcttgcacagcctggtttgctcgatttagtggttgtttcaactagtggagatgtcacaatggaagatgtagaagatcttagaccgtccaaaaagaaagtaatttacagtgaggtacagtaaatttaaactgttgacttgtgcttgttttattggcgttggccatctagtatcaaatacgaatatgtaatttcttgctatcattgcagcacaaacctatgtcagaaattacagctggcctgcggtgtggaatttatcatcaagggaagctccgagttaatcgttacaatccatttgaagcttacgttggaagtgagagcattggtgatgagattgttattcatggccgttcaaacatgaatagggcttttgatggagacatagttgctgttgagctcttgccacaagatcaatggcatgaatcgaagtcatttattgcagacgacgatggtacgttcttcagattccagcacatgatttttcccttacattgatggatgtttctgttctttcagaagatgatgaagaagacgtccatttggctccaaatagtgctgatgatgctccacggaaagccaatcccacacaatcaacagctgcatcatcagctgattctgtctctagtcgcccagttggacgtgttgttggtataatcaagcgaaattggaattcgtaagtcttttataagatagggatatgtttttgtaattacaatatatactcctgatttggaaataacctgaagagatgcatagtttatgaatcttgtttgtatacatattagacggatgcaaattttttgggctcaaggttttattcacccattatgaagttatgatctatacgtttcaacaaaaaaatgtccaaaattttgtatgtgtgaactgctaaaccgtccaaaatttcaacaactaaattgtccaaagctgtccaaaccataacttgcgtgcatttttatatttcaacgtgttaatagtacctaatagttttaaaaatatttcctccctgctatttcatgcatgcgttgtttatccatttttcaccggttagaatatggattgttttctgtgcttagattgtcatctaccaaaactattcagtctataattgcaatttaccttaactgttttatgtgcttcacattcatacaatgcctgcaaacggcaggtattgtgggtccttggagccaatgcccatgcctgctggtagtggaggcgttgctcatgctctatttgtgtctaaagatcgacgaatcccaaagattcgaattcaaactagacagcttggcaatcttctggacaaaaggattattgttgcagttgattcatgggatgtcttgtctcgatacccatcaggacattatgtacggactataggagatattggtgacaaagatactgaaacagaggcaagtcttacaattttacagctgcatttcacactttgtgttgcaacatttacttttactatgtaggagcatgcactgatgctaatgtgctaagtgatatttgtgcgtggaacaggttgtcttaatagagaatgatatcaacacaagacctttctctacacaagtccttgcttgtttgccaccattgccatggacattatcacctgaagatcttgctaatcctaatagacaagatttacgccatgtgagagtctttagtgtggatccgcctggtaaataaatcactgtcatgcattctatttatatttctgtagttggattgaattcttatggttcaactgctgtttaggttgtagggatattgatgatgcgctacattgcacgccactcccaaatgggaattttgaagttggagttcgtatcctttactgatttattttttatttgcagaattcaaaattggaatgctaatttaatcttaagggcacttacactttgagatggttctcaacctgtccactttcttctagtttattgctttattttggcttcatttcatcagattgtcagtatgcactgttccatccacctagattgagtatcacataagtttggatctgtagttacagatggaagtagcaaatatgcaaagcatgcaattttgttaaatgtatgtatcatatatatctacacaggcactaatcagaagaagtgtaactctatgctggttgttcgtattaattctatctggtctgtgcttagagcaattaaactcctcgaggaatttaacacatcaaggacataaagtttaagttagttacttttcattattaaaggtcattcaacactcttggacattgctgttgtagaataattatttgaggatccatgtgctacttgggatgcttgaaagtccttgtgtccttctacaagccaatttacctaagctatctgtcatggtgtcattgatatgaattttcacacgtcatgtttctttcacttttatttcacgcaccttttatactgtttgatttggagattgcatttcttgactcgggatgactagatattgctgacgtcactaactttgttcatcctggtactcctcttgatgaggaggcctcacaaaggggcacttctgtatatcttgttggacagcgaattgacatgcttccaaagcctcttactgaaggtatctctattacttatgtcgtatgcacactggattaacccaaagcggaacgtttctatttcaatttaagaatactcatataatgttaaagtattagtgaaagtaactaatgatcttctcaaatatgctggtttctagatgtttgttctcttcgtgctgatgttgagagattggcgttctctgtcatttgggtgagtagttcacatcattttattgttgcaatgttagcttgtatggagaagagtttatcttattcatacatcctacatttgtgaatagggcataagcctctaatatctactgttacggtattgtgaggcatctaccccttgacattttttaaaatattgatgcttcttcttctgattttttttaaaaaatattggtctgcaggaaatgacacctcatgctgatatcatatccacaagatatacaaagagtgttatcaagtcttgcgctgcaatgtcttatgtggaagctcaagcaagaatggatgacaggtgcctgttgtttcaacttctcaccttgaacatgcttagtataacccctatagtcttgcagctaaaacattgtcataaacttggttccttttcccttgattttcagccgtttggtcgatcccctaactgtagacctgcggaacttaaactcgttagcaaaggtttgcttttgtattgactcatctcatactgtaattgatgttctttatctattgctatttaccattgaaatgttttttttattattattatgtttcgaatgttcacacagattatgaggcatcggcgttgtgaaagaggggctctaacacttgcttcagcagaagtcaaattcgaaattgatagtgaaacccatgatccgcttgacataggtatgtgattggtagacctcataggtgtcatatatccaaatttatgtaaataaattacttattcaaaagttcatcaggaatatatcaaattcgtgaggcaaatcaaatgattgaagagtttatgttggctgcaaatatctctgtcgctgagaagattttgaagcacttccccttgtgttcattgctaaggtaaaatattacactcaagcctatacagccaactaaatggaaacacacaataactaatagaaaaggagttcaatcctctgaggtaggatgacaaaaattaccatacttgtcacaacaggttgcttcagagatagcttgtccttccttgcttcttactatatggttttcagtattgagtcctagctggatcattttcgcattgcagttttggtagaattgcacctcagaaattatttatgattataagtttttggcaactattttgcatggtggcattgtaattaatatcttatgcttcttagtgtttatggctttatgcttcacgcaatgctttcctatcttcagatacaaaccatgctgtggagattccattgctcatagacttaattgctgatacccacatttgacttgaagccgccctagttcagtatactaaagactaaaagatatgtctgtattttggcagatgtgaaaaatccatgtcataccatcatatgttaccacgcaaataaaactttagtgacaatattctccgtggccaactaattgttacaaaatttatcagtgactgactgttatttaatttgttttaatctatgcattgcttttaaaattgtggtttgaataataactgctgcattatttcatttctttactgttttgtacacgctaattttctttttatgttaaccaggcgccatcctagcccaacaaaggagatgcttgagccattactccgaactgcgtcttctgtggggctaaatctggatgtgtcatcctcaaaagcattagcagaatcacttgataatgcaaaggtgagatgggctgccatattttactctatatattatgaagtgttgttttattagtatatagtgcactccttattgttatggtgggactctactactgccggttggtcaagaagcactcacaggaggtggcggcagctaaggaggcaacaatcattagttattgttttattggatttgatctcttgatgttgatcttatcttgataaatgagttcgttaagcagctgtacttgaggggctgatcaactgatctctattctttgtaatcaagcaactaagcctccttgttagttttctctgcaccactatgccctgccatggcatccagcgcactgaagcactggtccacatagcactttccacttccactatgccctgcaccatttccctcaggaacataacaacatatgtttggacctgcatactgatcacttattacttcatggtttgcagaatgatgacccatacttcaacaagcttatcaggattttggcaactagatgcatgacacaggtaagatagctacattgaagctccccctattttaacatattgatagctactatgcccataaccaaccctgttggaacacacaggcagtttatttctgtagcggagacttgaccttttctgagtattaccattatggccttgctgcttctctttacacacatttcacctcccctattcgcagatatgcaggttagttcctatcgcccttagatgaacttatgcttaaagattttatttgaattgcgcatatagtcgttgggtgtttaaaccaatggatgtggtttgctatattaagttatttctttgtcttgcttctgagcagtgaatttatatttttctgcatgaaccttttacacaaagtgaatgttactcaatgtggctatgtgcatttaaatgtgtgaaatagcatcatgtccacaaatatggcattttctttagattgcctattactccagcacatgaagcctctgagcagtgaagttccaagatggcacgttcatgaattatgcagttccaagttgtaagaaagcattttgaaggactaacaatatccttttcttccagatgttattgttcataggttgttagctgctgccctagaaattgccaaacttccacccctctttcaggatggtccacaacttacaggcgtagctgacagtaagaaaatgaatgcactctgaagtacatctttctatgtttcacttcttggtactgaactactgataccttttgatgtcagacttgaattatagacatcgaaatgcccagatggcaagcagagcatcagttgagcttcataccctcatatatttcaggacaaggtacatttttatttcccaatggttgtgtgataggtcagcagtatatatcatgtaaaaaactgtggcctcaacacttcttattggtgcaggcggatggacactgaagctagaattgtaaagatcaaggcaaatggtttcatagtatttgtcccaaagtatgcttcaactgattaatttactgttctgttcttttctaatagagtatgcgatgcattaaggcgctagggcattgtacttctgctgtgtatttttctttctggttctcaacaagagggttctaattttactgaatgcctctttaagatgccacggcttcaacatctttgcagtctatgtagcaaagaattcattccgatttttccttgtatggagactaacatttcatcatttatatcttaaaaacaggtttggcatagaagggcccatctaccttactccaaagggagacaaggggggtgattgggtagtagatgaggtgcaccagagagtaaccaagcccgggacaaacgtcagttacgctgtcctgcagaccgttatgattcatatggaggtggttgagcctcagcctcaccgcccaaagttgcaactcaccctgatatga</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0129200, RefSeq:Os03g0129200