Os03g0145500

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Revision as of 12:19, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os03g0145500| Description = contains InterPro domain(s): IPR001194, IPR005112, IPR005113| Version = NM_001055484.1 GI:115450696 GeneID:4331602| ...")
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Gene Name

Os03g0145500

Description

contains InterPro domain(s): IPR001194, IPR005112, IPR005113

Version

NM_001055484.1 GI:115450696 GeneID:4331602

Length

9102 bp

Definition

Oryza sativa Japonica Group Os03g0145500, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:2495195..2504296

Sequence Coding Region

2495708..2495782,2496230..2496295,2496379..2496486,2496674..2496808,2497312..2497389
,2497543..2497593,2498354..2498428,2498524..2498586,2499597..2499686
,2499764..2499955,2500047..2500140,2500325..2500828,2500964..2501163
,2501261..2501305,2501572..2501631,2502407..2502490,2502670..2502867
,2503509..2504216

Expression

GEO Profiles:Os03g0145500

Genome Context

<gbrowseImage1> name=NC_008396:2495195..2504296 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:2495195..2504296 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggaactctccggcgagaccgcctcgccggcgccggagccggagccgccggggcagccggaggtgtcgccgcggggggcggggatgtttgaggatgcagtggaggggtcgtcgactgccacggagtcgccggtggcagtggcgcggccagacggcgaggccaccaccgagtcctcttcgccatcagcgtcgaggacgctggccggcgacgagccggcggccgcgggcgcaggggaagtggaggcctacggcggggatgagtcgccgtcggtttctgaaccgcgagaggagtcgggaagtgtggatacgggaagcgccgcgtcgccgtcggttttgcgatcggagcagcgtgcgaggggggcggaggagcaggagaattccatggccgcgcagttgggggaaggatcgccagcgagggaggagacgaagtcgaggatctcttcggcgccgtcgtcgccggttctatcgggcacgtcgacctcgtcgtcgtcgccgctgtcacagatcaagcatcaggcgcggcacgtgcgcaccggcagcttccagcgtttccggcagcagatgcagcgggcgtggaaatgggggccaattggaagtggaggcggcggcgagaggagccccagggagcagctgctgcgtacgacagtgaactttgaagctatggcgcatcagaagcggcagtggtatcaaatccaatccaagtcacgggacaataagcagtataaggaaccaacaacactctttgaacattttttcgtagtcggacttcattcttatgcaaatgttggagtcattgaggatgcatttgcaaagaagaaagcttgggaatctaatgtagaacactcggagattgtagatcttagaaaaattcaatatcatggacctataccaaccatggaaccacagattcttttcaagtatccacctggaaagaaagcggaaattagggaaattgatttgccgtcattctgttttcccgagggtgtaaaggcccgcttaatagagaggactccatcaatgagtgatctgaatgaagtggtatttgggcaggaacatctgtgtcgagatgacctgtcttttattttctccatgaaggtatcagataatgcaccactatatggtgtttgtctgcatgtccaggaaatagttcagagagcaccgggtatactaggcatggtttcaccactaaaccctacttcctacaagccaagtcgtttcttggtttctgcaccacgatgttactgtttactcacaaaagtgcccttttttgagctgcattatgagatgctaaacagcataattgctcaggagaggcttgacaggataacacagtttgctagtgaaattgctctggcagaaccaatcccccgctctatgaaagagcaaagtcaagtaaatggggaggattttgaatccgcaaatgagctttcttacaatgattggacagaatatgctgtacctgtcaacagtatatcaggtctcatctcttcatcaggacttccatcagagggagagattccttcatatttgttcaggagttgggagcctaattctcctgaaagtatgtcggctagtgagacttcagattctagttacataagagaactcgagaaggaaggcaggcatagtttccaacaatatgaggattgtatatcagagaacttgggatcccgttgtgatagctttggaagaacaagttatacttatgagaatggacatacttccccagatcttctctccacacattcgcctatctccagaagaatcatgcgtgcacagagcatggagtctttacacagttctgtgaaaggtgttgggtcagatgaagaagaagaactaaatatgaagcaagaaatagttgttgatgatgaaaaagttatgggatgggctaaggtacacaacaatgaacctctgcagattgtttgtggctaccatgctcttgctctgccacctcgtggaggtgaacttgttttccacccccttgaacatctgcaacctgttaaatactcccggcctggattgtctttattggggttaggagacacaatttcagacaatggtttgacttcagtagaaaaaactgaggtcaatgcccgtttggcggctgcagaagaagctatcgcattatcgatatggactacagctacaatttgtcgtgctttgtctctcgaaagtgtgctagagttatttgctgctgctctgttggagaagcagattgtggtaatatgctcaaatctgggtgtactgtcagctattgttttgtcagttatgccgatgataagaccattccagtggcagagtttattgcttcctgttctaccaagaaaattggtggattttcttgatgctcccgtccctttcattgctggtgtccaacataaaccccctgatattaagatgaaagcatcaagtattgtcagaatcaatgtagataaagatcaggtgaaggcatgctcattacctcaacttccacgattcaaagaacttgtttctgatctcagtccaattcatgctagactttcatgtgagaatgccctggctaagagacatccaatttacaaatgcaatgaagttcaggctgaggcagcttggcagttcttgaacgtcatgagatcctatctggagtcgctttgttctgacctgccatctcataccatcaccaatgtacagtcaaataatgacagggtttcgttgcttctaaaagacagttttatcgattcattcccctcaaaggaccgaccatttgtaaagctttttgtggagacgcagatgttctctgttctatcagattctcgactttccacatttgagaatgaactaacataa</cdnaseq>

Protein Sequence

<aaseq>MELSGETASPAPEPEPPGQPEVSPRGAGMFEDAVEGSSTATESP VAVARPDGEATTESSSPSASRTLAGDEPAAAGAGEVEAYGGDESPSVSEPREESGSVD TGSAASPSVLRSEQRARGAEEQENSMAAQLGEGSPAREETKSRISSAPSSPVLSGTST SSSSPLSQIKHQARHVRTGSFQRFRQQMQRAWKWGPIGSGGGGERSPREQLLRTTVNF EAMAHQKRQWYQIQSKSRDNKQYKEPTTLFEHFFVVGLHSYANVGVIEDAFAKKKAWE SNVEHSEIVDLRKIQYHGPIPTMEPQILFKYPPGKKAEIREIDLPSFCFPEGVKARLI ERTPSMSDLNEVVFGQEHLCRDDLSFIFSMKVSDNAPLYGVCLHVQEIVQRAPGILGM VSPLNPTSYKPSRFLVSAPRCYCLLTKVPFFELHYEMLNSIIAQERLDRITQFASEIA LAEPIPRSMKEQSQVNGEDFESANELSYNDWTEYAVPVNSISGLISSSGLPSEGEIPS YLFRSWEPNSPESMSASETSDSSYIRELEKEGRHSFQQYEDCISENLGSRCDSFGRTS YTYENGHTSPDLLSTHSPISRRIMRAQSMESLHSSVKGVGSDEEEELNMKQEIVVDDE KVMGWAKVHNNEPLQIVCGYHALALPPRGGELVFHPLEHLQPVKYSRPGLSLLGLGDT ISDNGLTSVEKTEVNARLAAAEEAIALSIWTTATICRALSLESVLELFAAALLEKQIV VICSNLGVLSAIVLSVMPMIRPFQWQSLLLPVLPRKLVDFLDAPVPFIAGVQHKPPDI KMKASSIVRINVDKDQVKACSLPQLPRFKELVSDLSPIHARLSCENALAKRHPIYKCN EVQAEAAWQFLNVMRSYLESLCSDLPSHTITNVQSNNDRVSLLLKDSFIDSFPSKDRP FVKLFVETQMFSVLSDSRLSTFENELT</aaseq>

Gene Sequence

<dnaseqindica>8515..8589#8002..8067#7811..7918#7489..7623#6908..6985#6704..6754#5869..5943#5711..5773#4611..4700#4342..4533#4157..4250#3469..3972#3134..3333#2992..3036#2666..2725#1807..1890#1430..1627#81..788#atttggcattaatatttcatccacaacacaaggcgaagcctacgaattccaattcccacttgctccggtctcgtgcgtgcatggaactctccggcgagaccgcctcgccggcgccggagccggagccgccggggcagccggaggtgtcgccgcggggggcggggatgtttgaggatgcagtggaggggtcgtcgactgccacggagtcgccggtggcagtggcgcggccagacggcgaggccaccaccgagtcctcttcgccatcagcgtcgaggacgctggccggcgacgagccggcggccgcgggcgcaggggaagtggaggcctacggcggggatgagtcgccgtcggtttctgaaccgcgagaggagtcgggaagtgtggatacgggaagcgccgcgtcgccgtcggttttgcgatcggagcagcgtgcgaggggggcggaggagcaggagaattccatggccgcgcagttgggggaaggatcgccagcgagggaggagacgaagtcgaggatctcttcggcgccgtcgtcgccggttctatcgggcacgtcgacctcgtcgtcgtcgccgctgtcacagatcaagcatcaggcgcggcacgtgcgcaccggcagcttccagcgtttccggcagcagatgcagcgggcgtggaaatgggggccaattggaagtggaggcggcggcgagaggagccccagggagcagctgctgcgtacgacagtgaactttgaagctatggcgcatcagaagcggcagtggtatcaaatccaatccaagtcacgggtataaaactctcctgtttcactcaatcctgcttatgatattcttgcattttatttgcaacttttgcttaggagtgactgaaaacctatttgaattgataactgagaacaaaagtgctaaatcaatcaaatagctttagtcttcgaggtcaagtagaaatgggcaggtccacgcaatcagatagtagaaaacagcagcagacaatgagctctaatgcttccacctatcttactatgtgttgtatgcatttcaacaacggaatcattgctcaacagctatattgttaaagaaaacgatcaaattgctaataccgcaatggtgcaatatgaattttcatacttgtagcgaagtagttgatgcattctgatgttctcatgaatcataacccggtgaacctggtattatttgagagtgtgatccccagagcaaattcacacaccatagtacctctaatattttgatctacaagtatcaaacatgtctcaagtacaaaagtacttcccttagaaccacagagatctgccttttgtattgcagtgcgctagtgcccatgttagtttctgttgcattattttggtttgtattcaatgtgaacttccccttgttactacgctggttatttactcttcttttttctgcaggacaataagcagtataaggaaccaacaacactctttgaacattttttcgtagtcggacttcattcttatgcaaatgttggagtcattgaggatgcatttgcaaagaagaaagcttgggaatctaatgtagaacactcggagattgtagatcttagaaaaattcaatatcatggacctataccaaccatggaaccacaggtgtgcttctttgaaaaaaaaaacatggaattcttctgcttgtgcacataactctagtttcatgaactctgaaaacgtctatcttgtttatatggcacatcccaagattctatcctgatttagactgttggacttggtctctagacctaaaagatgatcaaagagcaatttacttgcagattcttttcaagtatccacctggaaagaaagcggaaattagggaaattgatttgccgtcattctgttttcccgagggtgtaaaggtcagctaacttagttttttttttctcgctgaatttgtactgtacatattggatttataatgaattgccctttggttttcttagttgagtagaactgtctctaatgtgacagaaattttacttctggcatatgttgttttctaagtaattcaaatttgagtgaagatatctatcattcatctgggtgtttgaacatggagtcatgattcatctcttctatatttttggatttttgtccatcggttgattttttttcctgaaacatatcaattggttttgatatcttgtgtctgcaaaaattatttagtagtactatggttgcatgttgattatctagctttgtttcattaaaaggaggtctgagaggaagattcagttaagggtaaaatgaattttgtttgttgtacttctttgccggaacctgaggaatgcataatgatacttgttagtgttagtggtacacacttctttttggcataataatgctgttctattttctaacaattgtgataagcaaatgattatctgaaattgtttacttgctgatactttttatagtcctaggacttgattcttttcatttgactcggactaaaaaaattagttaaattgtttcgataattttctgtggagtattggaatactaagtagtgttaggtattgttagtgttaaccaacaaaaaaaatggtcttttcatttttccttctattcttattgggatatgtattttctgctgtaaatatatatattgattttttaatttcaaatttccaggcccgcttaatagagaggactccatcaatgagtgatctgaatgaagtggtatttgggcaggtgagactagttgtagcaggatatgggaaatctcctggtatttgcagtcgactgttttgctagtctgtagaaagatatagtaaatggttgttcaaaattcgttttaaaattcagtctaaattttggtggtcaatggataatcagggggcagttgtcatgtctccactataaatatgaatactcttgtggagattgcattactatctaacttgactctaatgtgctttctttcaaagtactatctaactataacaaattttatacaggaacatctgtgtcgagatgacctgtcttttattttctccatgaaggttagtttgtttattcttttctaatattcctggatgttagcattcagataatcatctatttacccttcttattgttgattgttgttcacgacaccaggtatcagataatgcaccactatatggtgtttgtctgcatgtccaggaaatagttcagagagcaccgggtatactaggcatggtttcaccactaaaccctacttcctacaagccaagtcgtttcttggtttctgcaccacgatgttactgtttactcacaaaagtgcccttttttgagctgcattatgagatgctaaacaggttggctatctttactaagtttcaagattgctttgatttatctggcctaagaacaatgttatgtataaaatggctagtctgtgctccctcaattctctgctaaccaatagtgtatggtgttgtttgtatgaacagcataattgctcaggagaggcttgacaggataacacagtttgctagtgaaattgctctggcagaaccaatcccccgctctatgaaagagcaaagtcaagtaaatggggaggattttgaatccgcaaatgagctttcttacaatgattggacagaatatgctgtacctgtcaacagtatatcaggtctcatctcttcatcaggacttccatcagagggagagattccttcatatttgttcaggagttgggagcctaattctcctgaaagtatgtcggctagtgagacttcagattctagttacataagagaactcgagaaggaaggcaggcatagtttccaacaatatgaggattgtatatcagagaacttgggatcccgttgtgatagctttggaagaacaagttatacttatgagaatggacatacttccccagatcttctctccacacattcgcctatctccagaagaatcatgcgtgcacagagcatggagtctttacacaggtaaccctgataattagaagaaaaaacatagattctgcagttgtcgagtgcaaattatggtcatcactcaccagatctgctggatgtctgaaatcatgtggtctttcctgtaaaactactatattatgtctagttttttcatgctatttaccttactcattaattatgccgtggtttctgacagttctgtgaaaggtgttgggtcagatgaagaagaagaactaaatatgaagcaagaaatagttgttgatgatgaaaaagttatgggatgggctaaggtttgtctgacacgttcaagcttgacaaaaggcatctgttggcccttgttctaataatagacttctttttttaaaaaaaaaaataaaataggtacacaacaatgaacctctgcagattgtttgtggctaccatgctcttgctctgccacctcgtggaggtgaacttgttttccacccccttgaacatctgcaacctgttaaatactcccggcctggattgtctttattggggttaggagacacaatttcagacaatggtttgacttcagtagaaaaaactgaggtgaatgtgtggtctttagagatttgttttgaagcacaatgcccccagcttccctaaccatgaaattttattattaggtcaatgcccgtttggcggctgcagaagaagctatcgcattatcgatatggactacagctacaatttgtcgtgctttgtctctcgaaagtgtatgttgtactttctgctctaagtttttacctatgtggctccatttttttgtgctgtattcccccatttttaaactagccatcttgtaacagggtaagcttgtagtagtaagtataataatgaagttgtatctctgttattttttccccttttctgctgccttcattaacctgcgagtggttgggtgggaaaatacactaaataggccttatcaagctttccgctaggcttcatagatctccttggctacaaagagatcccagaaaaaaagaaggtgctcccctaagcatttctcatagctcaaaagaagtcgagccaatcgtagactggtgagcggggaatgagagctccatactgtctttcctcttgtttttaggttgtttgtttaatttgagtagtacgtatcttatgtagattttggtttggtggtgtagcaaatatagagtgtatttgagtatatatatatagaaagtctgtctatctaggacgcatagttagatcgttattccaatgcatggtaattcctatgggctattttttgccgggtcggccgaaagattcggtcgaccaatttcattaagaaagaaaggtaatgaaacaatacagatagcttacaatgacagtaaactgtcgaattggatgttggctaggccctcatcctgtgagctgaacgaaaaaagttacaggcccggaggcgaactctaatcagtgattctcgttattacatggttgaataacccccgctgtcttccacactagggtttcttccttgacatcatccacaagctaacaagcattcctatgggctattattttcttcttaaagaaagggcgaagcctaagtagaaatagcacaattcactctataagggcaaagcacattaaattacatcggcaaaatagtcctccgttgctattattaaactcaatatagcagtctgtttgtctgtccctacgtaagcttctatgctcagtttgcataaaaataactaattgtttttcactgcaggtgctagagttatttgctgctgctctgttggagaagcagattgtggtaatatgctcaaatctggtatgcttgttagcttgagctttgtaactatgtgccctggtttcctcttatgcttcctgctgattccagcacctcccttaaatgcttaactgcagggtgtactgtcagctattgttttgtcagttatgccgatgataagaccattccagtggcagagtttattgcttcctgtaagttctatcatactctttcctgtaagtttcaggtttctgttcaattatgtactttttaatatcatatcggtaatttcagttttgtttgagtggccccatgggggcctgggctttgatctgactgattctacctttttttggtggctcagttttgctccttttttttctcatgtttatcataccttatcattatgatgtaatcatgcaggatccgtcttctttgtaactgaataactttctataaattagtgaaaatatcatattgcctttgatgctaaaatatacgtggctattgtccttctgttttagatttcaacttttgattttggagaatatgaattggtagttgaagtagacaactagtatcaagagggtatggcctttgtagagtttgtgttttaataaaacttgggcttttcaaacccagtttaaatgcactcgcatggactcattgtgctcctaaatgctgtgtgcaacttagtaataactaaataaattgtgaaagatgcaacttttaatgtagtgtataaatagtctgtacataagagcggtattttaactgttggactgtcttttctctatttgcatttgtcatccgaccgtaggcatttgctttctctgaaacagatgtattgatgtctagattctatacatgctttgaacattggactaataccctaaaagagtgatagatttgtagctcattcatatatctcatgttcctattctgctctgaagtcaaacaactgcttttcaggttctaccaagaaaattggtggattttcttgatgctcccgtccctttcattgtaagttctgaatgttcttttaagcacacttattggtcatgctctttcaaggagtcatcactgaccgcaattgccaatttgtgcatgttaccgatcttcaccatgttctgattgtttgtgcatattagctgatggacgtgttctctcctacaggctggtgtccaacataaaccccctgatattaagatgaaagcatcaagtattgtcagaatcaatgtagataaagatcaggtaagtgcatcatatttttcctgtaatttaaaatatcttgggaataaatgctttttttttgtcaaaagtgaataatttattcttgctctatgcctagctaacatgtcagcatgtcagttggagtaatttaagtgaacaatatcaataggagtaagttggaattgattttacccattggtgtcttggtgacatttcactacacccaatcaggaatcacaagttccatatgcatgctctgccaaacgggaattgctagttccgtatacattctgattttcaaagaacaaaaatgttttgtgcgagtctatgagaccagggcttcaaggtttatacttccagggtacatagtacgtctactgttgcatgatggaactcctgggctgatcatgttgattttgtgatattttactggtgcaagcaaagcatacgtgctgctgttatgactttttgcaggaaaagattcatagccactaactgttagcaactatactgaaaatgcgcaggtgaaggcatgctcattacctcaacttccacgattcaaagaacttgtttctgatctcagtccaattcatgctagactttcatgtgagaatgccctggctaagagacatccaatttacaaatgcaatgaagttcaggtagtaatattatttataaaatttggaatagggatcaatcctgtttggtgcctgttcccttggatttttccctttgcagatcttgatcatgtaaaacttgttgatccttcatgttagattttattgaaggataaagatggctcgaaatatttcccatgtattacaactagtttggatttcattacaggctgaggcagcttggcagttcttgaacgtcatgagatcctatctggagtcgctttgttctgacctgccatctcataccatcaccaatgtacagtcaaataatgacagggttagcaatatgaacactggtttgcactttaattattgaaaacagcataaatccagtcaatgatatttcttctatcttatcaggtttcgttgcttctaaaagacagttttatcgattcattcccctcaaaggaccgaccatttgtaaaggtatttgtagttgagttacgtttttacgaaattaatagaaatttataagttgttcatgaacccttggatggcaaacctgtagtatacttctagaggcatgccagtctttctccacatcgtaggtcctgttgatgagatagagctttcaaaagatgttaatattgtctgcacttttaactcttttctgttccttgtcctagatcactgctaaaagaaaacctaggtcactgaccttttttaaaaaaaataaaagaaaccagaagggtggagggacataacaagagtattagtatatgaacaggtctcagtatagaaatttctcaatgaaacgaattttgtaaggatgccagagctgtattgtctgtgtttttcatctaatcatcttcccttcttttctgttattcatgcaaattctcgactctaatgaaacgaaacttgtgtttgcagctttttgtggagacgcagatgttctctgttctatcagattctcgactttccacatttgagaatgaactaacataaaacggtttgctctagtcagagatcaaagtaatcaacttccccggtttgtggcgaaaatttccctgtcattagaacgatcgggcaatgggaagaaaaggcagtccggaccgagaattgagggttagactgcgcaagccccagaagtttccgttcaatgctggagcttaaaagacggatgaatcggatagtctggacatgaaaaatgtgtgatgcaacccagtcttttaaatgggatgcacctgtcctttgggtttgggaaggtatacatgggatggaaaagaaatgtttcaatgctgcattacagttatatatatttttggttcctagtattctcttcgttatacaaatcagcgtatatagtgaaaagaatcctgtaaataagatagcttattcattgcagtgcgcatatacccggagttcgggttaggtccctagttcgggacttcgggtgcacaagaacgtcatcacagttattagttgattataatgtattcatctttcgtagctttttcg</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0145500, RefSeq:Os03g0145500