Os03g0163100

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Revision as of 12:21, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os03g0163100| Description = Protein of unknown function DUF1012 family protein| Version = NM_001055590.1 GI:115450908 GeneID:4331717| Length = 7...")
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Gene Name

Os03g0163100

Description

Protein of unknown function DUF1012 family protein

Version

NM_001055590.1 GI:115450908 GeneID:4331717

Length

7536 bp

Definition

Oryza sativa Japonica Group Os03g0163100, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:3395669..3403204

Sequence Coding Region

3395752..3395846,3395938..3396029,3396187..3396299,3396894..3397159,3397342..3397413
,3397572..3397647,3397790..3397888,3397981..3398135,3398228..3398332
,3398429..3398515,3399008..3399092,3399175..3399322,3400017..3400093
,3400184..3400264,3400686..3400877,3400964..3401077,3401199..3401291
,3401413..3401539,3401624..3401700,3402004..3402051,3402137..3402206
,3402286..3402359,3402444..3402554,3402771..3402890

Expression

GEO Profiles:Os03g0163100

Genome Context

<gbrowseImage1> name=NC_008396:3395669..3403204 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:3395669..3403204 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgagatcgcagctcgacgccgccgccgtctcgtcgccgccgcgggcgcccgccgcccggcggtgcctccgccccgcgctgccactggccctcaggtttcatgcgttccccgggcaggttcgcgtttatcgcggtggtggaatcggagtcggagtccgctccgcgggccatctcccaagcaagcgaggactagtaagagtgttcgactcagcaatggggatgaatgagaaggtgactaatggtaatctagaacaaccaaccacttccacatccggaaataacccaagctttcctgctgagggaaacttcaacgtggttactgttgtaagcatcacattctgtgttctacacaaaattgttattggccagatgcagttgatgacaaaatttctcccttggatgtcacacaacattacaagtttaccattggcatgcatatcagatcctatgaaaaaacctgttcctctgaagctagatgttagttttccacaattgcctgatatccgatggagcatttcacgcttgtactacctattcaattcacagcttgaacggaacattgccttgtctatcattactttgatgattacgtgcttttcactagttgttgttgggggattcttgtttcataagttcaggaagaaccaacaaagtttagaggaatgtttttgggaagcttgggcatgtctaatttcatcatctactcacctaagacaaaagacgcgcattgagcgtgtgcttgggttctttcttgctatctggggcatattgttttattctcgtttgttaagcgcaacgacagagcagtttagaatccagatgcataaggtaagagaaggagcacagcagcaagtcattgaggatgatcatatcatcatctgtggagtcaatagtcatctgccatccatattgaatcaattgaacaagttccatgaatcatcaattaggttaggaactgctactgcaaggaagcagagaattcttcttctatctgatcttcccagaaagcaaatcgagaaacttggagatagctttgccaaagatttaaaccatattgacgtcttcaccaagagctgtagccttagcttgacaaaatcatttgagagagcagcagcaaataaggcaaaatctataatcatcctgcctgcaaagaatgaacgatatgaagtggatacagatgcatttctttccctgctggctctgcaatctcttccacaaattgcatctattcctaccattgttgaggcttctaactcaaccacatgcgatcttctgaaatcaatcacaggcttaaatgtgcagccggtggagatggctgcttctaagctgtttgtgcagtgttctaggcaaaagggtcttattaaaatctacaggcacttgcttaattatcacaaaaacgtcttcaaccttttcagctttcgggaagtagtaggcatgaagtatgtggatgtgaggcgtaggatcccagatgcagttgtttgtggtattttccgatctggaatgatgcactttcacccatgtgaggatgaagtgctgacagagaaagacaaactactacttattgctcctgtttcctggaggagaagagcacagtctacattctcaaattctccaaatggagcacaaaattcaagtcattactcagagtcaacagagggacaaagatcgtctagtatggctcttgaggtgaatgaaacacggctaaatagcatcagaaagcgcccctcaaaaacgctctccaagagcaatgattacacgctaggaccaagagagcacgtgcttattgttggttggcggccaaaagttactgatatgattcgggaatatgataattaccttggacctggcagtgtattggaaatattgtcagaaacccctattaaagagcggagcagtattgtcaaccccctcatgcagaaacaactgaaaaatattaaagttaaccatcaggtgggatgtcctatgaactatgatactctaaaggaagcaataattaaatttaagaaatccaggaagcatgaccaaaatgttccgttttcagttgtcgtaatatctgacaaagactggctaggtggagatactgcacaggttgataaacagttagcgtatactcttctccttgctgaaaacatttgccagaaacatgacattaaggttgagcatcttgtatcagaaattgtagacacgggactgggaaagcaaatgtctagaataaaaccatccctctcatttattggagcagaggaagttatgagccttgtaacagcacaggttgcgggaagtagtgagttgaatgaagtatggaaggatattctgaacgctgaaggagatgagatctacatcaaggaaataggattctacatgaaagaaggggagaagatatcattttcagagctcactgaaagggcgattttgcgtcgtgaagttgcggttggctatgtcaagggcaagaagcagtatataaatcctacgaacaagttggagctactttcttttgaaatgacagatcaactcattgtgatatctgagtttgaaggtgaacagccagttgtaaggggtggagacacttccacataa</cdnaseq>

Protein Sequence

<aaseq>MRSQLDAAAVSSPPRAPAARRCLRPALPLALRFHAFPGQVRVYR GGGIGVGVRSAGHLPSKRGLVRVFDSAMGMNEKVTNGNLEQPTTSTSGNNPSFPAEGN FNVVTVVSITFCVLHKIVIGQMQLMTKFLPWMSHNITSLPLACISDPMKKPVPLKLDV SFPQLPDIRWSISRLYYLFNSQLERNIALSIITLMITCFSLVVVGGFLFHKFRKNQQS LEECFWEAWACLISSSTHLRQKTRIERVLGFFLAIWGILFYSRLLSATTEQFRIQMHK VREGAQQQVIEDDHIIICGVNSHLPSILNQLNKFHESSIRLGTATARKQRILLLSDLP RKQIEKLGDSFAKDLNHIDVFTKSCSLSLTKSFERAAANKAKSIIILPAKNERYEVDT DAFLSLLALQSLPQIASIPTIVEASNSTTCDLLKSITGLNVQPVEMAASKLFVQCSRQ KGLIKIYRHLLNYHKNVFNLFSFREVVGMKYVDVRRRIPDAVVCGIFRSGMMHFHPCE DEVLTEKDKLLLIAPVSWRRRAQSTFSNSPNGAQNSSHYSESTEGQRSSSMALEVNET RLNSIRKRPSKTLSKSNDYTLGPREHVLIVGWRPKVTDMIREYDNYLGPGSVLEILSE TPIKERSSIVNPLMQKQLKNIKVNHQVGCPMNYDTLKEAIIKFKKSRKHDQNVPFSVV VISDKDWLGGDTAQVDKQLAYTLLLAENICQKHDIKVEHLVSEIVDTGLGKQMSRIKP SLSFIGAEEVMSLVTAQVAGSSELNEVWKDILNAEGDEIYIKEIGFYMKEGEKISFSE LTERAILRREVAVGYVKGKKQYINPTNKLELLSFEMTDQLIVISEFEGEQPVVRGGDT ST</aaseq>

Gene Sequence

<dnaseqindica>84..178#270..361#519..631#1226..1491#1674..1745#1904..1979#2122..2220#2313..2467#2560..2664#2761..2847#3340..3424#3507..3654#4349..4425#4516..4596#5018..5209#5296..5409#5531..5623#5745..5871#5956..6032#6336..6383#6469..6538#6618..6691#6776..6886#7103..7222#gctcaactgcttcggtccttccgcccgcgccgcgcgagcacctcgccgccggtggagcagcgagagaggtggaggagggagggatgagatcgcagctcgacgccgccgccgtctcgtcgccgccgcgggcgcccgccgcccggcggtgcctccgccccgcgctgccactggccctcaggtacacactgttactacatgtgtacaagggtttttttgatcttctgctgatctgaatccgcgtctctgattttttttctttttcctcctaggtttcatgcgttccccgggcaggttcgcgtttatcgcggtggtggaatcggagtcggagtccgctccgcgggccatctcccaagcaagcgaggttcgtgggcggcaaatgcagcacgcgtttcctgtctgctatttggatttctaacgttttctctctttatttaaacgaaattggtgaccgaaccatgttctgattttatcaatttaatttttacgcatgcctttatttctatgcttgcgttggccaggactagtaagagtgttcgactcagcaatggggatgaatgagaaggtgactaatggtaatctagaacaaccaaccacttccacatccggaaataacccaagctttcctgctgaggtgattttttttttccggtacatcattcattttctttttctttttgaattgtgatgtgatgatgatagacaccagggccagcatgtgaattttatgatggcaatgcaaaaatttgattggtagattaaggtggcatgtgttttttagaatacatgctttataggtcaatggtggtgaagtcgggttgtttgacagagcatctaattaagtggttctgcactggcagtgccacaagaatgattttattatacacataaatgcataatcagaccccaataaccaaatcccgcccttatgattgacgaataacagttgtgagctactgctttctggaccaaccaggtttagattggtccatgcttcctttgttggaatatggattagagactgctaaatgacgtgttcatctaactcctcgttatgagaataatcgataattagaaataatgcagttgatttgtgccttttgaagcaacgatttcaattgaaatatattccatatgtattcagtattcccttcagctgcagttcacaacggatgatatacaaaaacacctttgtcttgcttaatgtttcataatcataatttttcagggaaacttcaacgtggttactgttgtaagcatcacattctgtgttctacacaaaattgttattggccagatgcagttgatgacaaaatttctcccttggatgtcacacaacattacaagtttaccattggcatgcatatcagatcctatgaaaaaacctgttcctctgaagctagatgttagttttccacaattgcctgatatccgatggagcatttcacgcttgtactacctattcaattcacagcttgaacggaacattgccttgtaagttgagcagttagacatatatgtttggtatttttcatgcttcttttggcagattactgcattactggactttcactttttgcacatcctgaaaagtttgtctattcctaatttacacataatatatttttagctcatggtaaatcaatttcataatttatactgacttatcttggcaggtctatcattactttgatgattacgtgcttttcactagttgttgttgggggattcttgtttcataagttcaggtctgttatttttatttaaagagtttgcatttttctaatttaatcttctccgttctctagcattgctccttttatttgtatgcttgttttaaaaaaacctctctgtaataattggacaagcataaaagtatgatgaaatatcttggtttatttttcaggaagaaccaacaaagtttagaggaatgtttttgggaagcttgggcatgtctaatttcatcatctactcacctaagagtaagtagagactagtgactgttgccaattgaagatatatgctcaaattaggtttgcgtaaccttattaaattagcataaccatttatataaatgtttttccttttatgtaatctatgttaatatgatctttcttttaacagcaaaagacgcgcattgagcgtgtgcttgggttctttcttgctatctggggcatattgttttattctcgtttgttaagcgcaacgacagagcagtttagagtaagttacctttttgaaaatatacaaaatcgaggtgaagaacattaaattcagtgcatgcctctggtaaataaccaccttatcgtgtacagatccagatgcataaggtaagagaaggagcacagcagcaagtcattgaggatgatcatatcatcatctgtggagtcaatagtcatctgccatccatattgaatcaattgaacaagttccatgaatcatcaattaggttaggaactgctactgcaaggtaattgaaggataacataattaatattctggttttgcctatctatattattctctaatgcagctgattactttcttttgaacaatgtcaaggaagcagagaattcttcttctatctgatcttcccagaaagcaaatcgagaaacttggagatagctttgccaaagatttaaaccatattgacgtcttcaccaagaggtaaagggtcacgatcatttgcttccatccatttacgcttgacacactttctttgacatatcaaaactcattgagctccaattttttacatttcagctgtagccttagcttgacaaaatcatttgagagagcagcagcaaataaggcaaaatctataatcatcctgcctgcaaagaatgaacggtatgcatacagcacaaacttttcaatttgctctggttagcacagagtaaattgcattttctttactggaaatcatttcagagaagggcatgttctgtttcataacaaacctctgtgatgtcgcattaagattgtagagatagctaaaatcagcaggttatccaattcatcaatgttacttacattccatttgtgctagtactggatgggatcatggccttatgggatacttcaaccttttttattggaggtttggaatgataacttgaaatgggcagtcactttatcagaattgattaccaagacaaactttctaagggaaagcagtggatgctctgaacatatctcttgtctgccatttgttgaatataaatgccatatgtaaagacttctttttttccacacaagcagatcttttgcaaaacaagtcctgttgaaatttgagtacttaaaaccacctttttgagaactcatctttttgaacctgaccagatatgaagtggatacagatgcatttctttccctgctggctctgcaatctcttccacaaattgcatctattcctaccattgttgaggtatatacaacctcctaaattcatgcaatcaatataaatataaaaaattgtgcctttatgtattcattttatatcattgtaggcttctaactcaaccacatgcgatcttctgaaatcaatcacaggcttaaatgtgcagccggtggagatggctgcttctaagctgtttgtgcagtgttctaggcaaaagggtcttattaaaatctacaggcacttgcttaattatcacagtattgttctaatcttactgatatatttttgttgatacattttatgtagaaggttgcagatttgcagttatctttaaggactaccaactttgttttcacatggtcaaattttggaatacacaaataaacccgtttgccgttctggtttgtttcacaaaaccagttgtgcctccctggtgtgcctcctttgttcattgaactgtagttctacacttcagcacataattagtacaactgtggactgattcagaaccaatcatatatatcaatccaacttttggttatgaactaaataattgttttgagcctcctaggtactgtaccatttgcaatatttctggccattttttcctttttctaaaatcacttttgtggctagcttgggtcatctctagccacacataaacatattgtttctctttcttctgaacttcaggaactagcatccatcttatagtttaccatagtttagtgtgtgattctgcaattctgatgtcaatggttgcacttacatctaatctatcagaaaaaatgtctcatattgaaatggttttatgattttgtcattattgttttctgctttttacatgcttttgccttttattgaattggttcgtgagtacctgaattattttgtgctctcaatgataggatccattatctggttgtgacttatgttgttcttatcatgcagaaaacgtcttcaaccttttcagctttcgggaagtagtaggcatgaagtatgtggatgtgaggcgtaggatcccagatgtaatattacttcaaataagtggatgtctaaactctgcagatctgtatgacttcattttcgtgatttctctgctttgtgttcatgaccaggcagttgtttgtggtattttccgatctggaatgatgcactttcacccatgtgaggatgaagtgctgacagagaaagacaaagtaagtttttctttcttttgttgttgttttccttttcatgttaggacaactagtagaaaacatttctcaacatattattccagaagaattatcttttcattgaagtcttaaagcccttctaaccaccgtcctaagccattaccaaagtgagcttattccattgttctgttaaatagatactgattaggttcttatcttgttaattactaaagttagcataagtttaagtatctgttagtttctgaatattttactagtaggcatttttcttctaaaaggtccactggaattacctgcattccctacaagagataatgcggttgtgatttccagttatatcatcaatcaggagaacatagtacttgacaattgagttttgtagctgatgatgtcatacattcttgattcctttaattcacagctactacttattgctcctgtttcctggaggagaagagcacagtctacattctcaaattctccaaatggagcacaaaattcaagtcattactcagagtcaacagagggacaaagatcgtctagtatggctcttgaggtgaatgaaacacggctaaatagcatcagaaagcgcccctcaaaaacgctctccaaggtaaatgctagtgtaatgatgtaccaatggaaatccatcccctctccgtcagattactgggttcataagtggttgactgtatgcagagcaatgattacacgctaggaccaagagagcacgtgcttattgttggttggcggccaaaagttactgatatgattcgggaatatgataattaccttggacctggcagtgtattggtatgtgtagggataataggaacgataaaaatattagctgcagtagaaaatgaggagtttatgactacattgccacatccatacgtatgttcatgtctaataagttaactttgatgtgcaggaaatattgtcagaaacccctattaaagagcggagcagtattgtcaaccccctcatgcagaaacaactgaaaaatattaaagttaaccatcaggtctcttaaaccctctatgtgaatagtaacctctgatgtccactgataatatgcttgcacaggcagaaaaataactctactattgttattcgctaatttttatgcgatagcattaatgcaggtgggatgtcctatgaactatgatactctaaaggaagcaataattaaatttaagaaatccaggaagcatgaccaaaatgttccgttttcagttgtcgtaatatctgacaaagactggctaggtggaggtatgggttacatgccagtaacagaaccatgctatttccctgttatatataaaattgaagttcacctgctaatggattctgcagatactgcacaggttgataaacagttagcgtatactcttctccttgctgaaaacatttgccagaaacatgacattaaggtcagttcttctcaagttcccattatttatagtgcttgaaacacactaagtgaacctccattctctcatcagcatgcaacacatttccttttggaatactgtgatacactttgtctaaaatccataaaatcattatcctgttgttttgcattactaatggttcaataaaatatgaatggttcaatgctattttgttttcttcttgaatatgatgtggttcaactagtcatctcgttcaatagttttcttataaataataaaatataattgaattttgtattttatctgaatgtgttcctacaggttgagcatcttgtatcagaaattgtagacacgggactgggaaagcaagtgagaattcgcttgttggctattactaaattcatcaaattactttaatttggaagcaaatcttttagcctttcattttttgcagatgtctagaataaaaccatccctctcatttattggagcagaggaagttatgagccttgtaacagcacagggttagttttttttttaatcaatcttggttattttattttctctgaaatctatcgcatgataaaagaaaatgtgatgtagttgcgggaagtagtgagttgaatgaagtatggaaggatattctgaacgctgaaggagatgagatctacatcaaggtaatatgagcacaatcggtgtttctgaccaattcttgtatttttgtgatagttcaaggaacttttttgctgcacattttctaggaaataggattctacatgaaagaaggggagaagatatcattttcagagctcactgaaagggcgattttgcgtcgtgaagttgcggttggctatgtcaagggcaagaagcaggttaagattctctatgttattctgtagccttataagggtgtgatattttcgaagtacataagaccttgttaagatcaggtccttcttaactttgccatctagctttatggacctgatttgtattgacatgaggttcttttggcgttgtgaatagcagtccatgaatcaagtgttgttaataaccaccaactaatttatattttgtatgccatgcagtatataaatcctacgaacaagttggagctactttcttttgaaatgacagatcaactcattgtgatatctgagtttgaaggtgaacagccagttgtaaggggtggagacacttccacataaaatttccagcttgatgttctgctgaaatttcagtagcttcatctattatgatgaggtcttgtatcacgttagatgttaatcattctttcccctgggttcaaagggaaataaaaaaaaagtcataaaggccatttagtaaaatatcatatatgccttaatagctgtagaaccttttgagcttttcttttatttatctgcagctaaactgcagaatcttttctgtttattgtaaacatagttgattcacatagtcaacttgtctgatgtagcaatcttgcataaagaaatggaaaggaaagttctttgatgttgcc</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0163100, RefSeq:Os03g0163100