Os03g0169500

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Revision as of 12:22, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os03g0169500| Description = Similar to Cellulose synthase-like A4| Version = NM_001055635.2 GI:297600394 GeneID:4331764| Length = 4878 bp| Defi...")
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Gene Name

Os03g0169500

Description

Similar to Cellulose synthase-like A4

Version

NM_001055635.2 GI:297600394 GeneID:4331764

Length

4878 bp

Definition

Oryza sativa Japonica Group Os03g0169500, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:3707558..3712435

Sequence Coding Region

3707558..3707932,3708653..3708751,3709758..3710010,3710457..3710757,3710864..3711259
,3711346..3711543,3711658..3711788,3711920..3712006,3712401..3712435

Expression

GEO Profiles:Os03g0169500

Genome Context

<gbrowseImage1> name=NC_008396:3707558..3712435 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:3707558..3712435 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggaggggcagtgggggcggtggcggctcgccgcagcagcagccgcctcctcctcgggggaccagatcgcggcggcgtgggcggtggtgcgggcgcgggcggtggcgccggtgctgcagttcgcggtgtgggcgtgcatggcgatgtcggtgatgctggtgctagaggtggcctacatgagcctcgtcagcctcgtcgccgtcaagctgctgcggcgggtgccggagcggaggtacaagtgggagcccattaccactgggagcggcggcgtcggcggcggcgatggcgaagacgaggaggcggcgacgggcgggcgggaggcggcggcgttcccgatggtgctcgtgcagatccccatgtacaatgagaaggaggtgtacaagctctctattggagctgcatgtgctctcacgtggcctccggaccgtattataatccaagtcttggatgattccactgatccggccattaaggatctagtggagcttgagtgcaaggattgggcgagaaaagaaattaacataaagtatgaaatcagagataacaggaagggatacaaagcaggagccttgaagaagggcatggaacatatctatacccaacagtgcgattttgttgccattttcgatgcagatttccaacctgaatctgatttccttctaaaaacaataccatttcttgtgcataacccaaagattggtctggttcagacacgttgggagtttgtgaactatgatgtttgccttatgacaaggatacaaaagatgtcactggactatcatttcaaagtagagcaggaatcaggctcatctatgcactcattctttgggttcaacggtaagatccaatatcagaactacttacatgaacttttcatgcctggtcctaacatcgctgatctgcctacaggtactgctggtgtgtggcgggtatcagctattaacgaagcaggaggttggaaggatcgcacaactgtggaagacatggacttggctgtacgggcaagcctcaagggatggcaattcctgttaagagtgaactcccaagtaccttcaaagcctaccgacatcagcagcatagatggacttgtggtgctgccaacctcttcagaaaaatggcaacggaaattgccaaaaacaaggcaagccttcttcaatgacagaatggaacatgttacgggattgtcatgcaataatttctttacccggttatatgtgattcagggcgtatctgtatggaaaaaacttcatctactctacagctttttcttcgtaaggagggtcgtcgctcccatcctgaccttcctgttctactgtgttgtgattccgctgtctgtcatggtccctgaagtcagcattcctgtctgggggatggtctacattcccactgccattaccatcatgaacgccatcagaaatcctgggtccatccatctgatgcctttttggattctattcgagaatgtcatggccatgcaccggatgcgtgcagctctaaccggcttgctcgagaccatgaatgtcaatcagtgggtggttactgaaaaggttggtgatcatgtgaaggacaagcttgaagtccctcttcttgaaccattgaagccaacagactgcgtcgagaggatttacattcctgagcttatggtcgcgttctacctcctggtatgcgcgtcttacgatttggtgctcggggccaagcactactacctgtacatctacctccaggcatttgctttcattgctctgggattcggacaagctctcaccacaaaaatctcacctgtaaacattccagtttttaccattgttgtatgcattttctacagcccctgcagtgcagaggctttcgtctttccacagatgcctgtgatgtaa</cdnaseq>

Protein Sequence

<aaseq>MEGQWGRWRLAAAAAASSSGDQIAAAWAVVRARAVAPVLQFAVW ACMAMSVMLVLEVAYMSLVSLVAVKLLRRVPERRYKWEPITTGSGGVGGGDGEDEEAA TGGREAAAFPMVLVQIPMYNEKEVYKLSIGAACALTWPPDRIIIQVLDDSTDPAIKDL VELECKDWARKEINIKYEIRDNRKGYKAGALKKGMEHIYTQQCDFVAIFDADFQPESD FLLKTIPFLVHNPKIGLVQTRWEFVNYDVCLMTRIQKMSLDYHFKVEQESGSSMHSFF GFNGKIQYQNYLHELFMPGPNIADLPTGTAGVWRVSAINEAGGWKDRTTVEDMDLAVR ASLKGWQFLLRVNSQVPSKPTDISSIDGLVVLPTSSEKWQRKLPKTRQAFFNDRMEHV TGLSCNNFFTRLYVIQGVSVWKKLHLLYSFFFVRRVVAPILTFLFYCVVIPLSVMVPE VSIPVWGMVYIPTAITIMNAIRNPGSIHLMPFWILFENVMAMHRMRAALTGLLETMNV NQWVVTEKVGDHVKDKLEVPLLEPLKPTDCVERIYIPELMVAFYLLVCASYDLVLGAK HYYLYIYLQAFAFIALGFGQALTTKISPVNIPVFTIVVCIFYSPCSAEAFVFPQMPVM </aaseq>

Gene Sequence

<dnaseqindica>1..375#1096..1194#2201..2453#2900..3200#3307..3702#3789..3986#4101..4231#4363..4449#4844..4878#atggaggggcagtgggggcggtggcggctcgccgcagcagcagccgcctcctcctcgggggaccagatcgcggcggcgtgggcggtggtgcgggcgcgggcggtggcgccggtgctgcagttcgcggtgtgggcgtgcatggcgatgtcggtgatgctggtgctagaggtggcctacatgagcctcgtcagcctcgtcgccgtcaagctgctgcggcgggtgccggagcggaggtacaagtgggagcccattaccactgggagcggcggcgtcggcggcggcgatggcgaagacgaggaggcggcgacgggcgggcgggaggcggcggcgttcccgatggtgctcgtgcagatccccatgtacaatgagaaggaggtgaggcgttggaactctcccttttccccccttccactgctgaatttcgtgatcgatcagtgtacgatccgcttcggaatcggaagcgtgcatccaaatctcccagcgatggttggacaggcttgcttaatgctctagcgctttttcactttcacatgtgacattttgcgaggcattgcttcagctctcgttcttgttaatccgcaatgcattgcttcgcagctctcgctgttgttaatctcttctaattgtgtggcgcatttgcgctgatattttagtctgttgatttagaatttgttcttccgagcctctgaatcagccgctggaataatggctcgtgggaccctgtctgtgctcagatcaataggacttagttacatgtggggttttgttttatcaatatagcgacatagcgtgcccgctagatgctaccggatgagggcccacattgcgggccttgcaaagcaaaccaggttgcagaactgttttgtagttcagcaatatccaggagctaactaatccaggaaattattgttaagggcaatttacaatcgccatctaatgggtttagcattctgtctatttggtggagatgttaactaagactgcgcgttgaatgttagttgtttttgtctgacaagcatccaagtaatgtttcaaagaatttgctaattggtttccagcatgtgaaaatgtgatgcatctgccattcttgtgcaggtgtacaagctctctattggagctgcatgtgctctcacgtggcctccggaccgtattataatccaagtcttggatgattccactgatccggccattaaggtaagttaaacttctgcatacatgcttagttttctcctttactcgagccaagtattttcagaagtcatgcatggcaaattggcggtgcaaagggcttagatgaagagacggtccatgcaatgttcatgtcaaacaagtagctagttcctcatagttcttgttgcttccttttatggtttacgttgttcagttgtggagtgcagaaggatgatggctcataatcctgtggattaaccaagtacaccccacatatttctgtgagttgaccacgcagaatagaacggttgatgatcttagtgtgacctgtattttgcctatcttagatatatagtacatgcccaaaattattttccctagatactcaattgctggtctactcatgattgctagacatgtaacacaacacagagtagttgacatagctaccacttgtagacctttatttaaccataatatcctaaactgaggtcattgacaggataaccacaggatcataccacttgcaaattaataacaatacaaatgcgtgatgaagttaaacatgctaaaatactgggttcacaaagcttgtgcttactattatttatttgcaatgatatagtttgataattcagcttgacaataaaaattgcagctgtaagctgatcccatcatgtgaagtactggataatctatgttcaacattgcacatgttaattactgcagttatttcctatgcggtaaccaaggaggttctttctctttttataaaataaaagaattcgtcgttctgcttaatagttgcagctgtgcgttgattgcattatgtgaatcaaagtagttcaacatgacatcatgaagttttacttcatgcgctataaggttactttcaggtagatgaagattgatcaagtgtacttatgtactttcactgcttagaaatccacaatccatcattattttctatttagagttagagcttaaaataggatttttgtttctttacttagattttggtcaaatgcaggatctagtggagcttgagtgcaaggattgggcgagaaaagaaattaacataaagtatgaaatcagagataacaggaagggatacaaagcaggagccttgaagaagggcatggaacatatctatacccaacagtgcgattttgttgccattttcgatgcagatttccaacctgaatctgatttccttctaaaaacaataccatttcttgtgcataacccaaagattggtctggttcagacacgttgggagtttggtaagcaagtattttcattgtttcattccaaccttgtgagggtagtcaaattaaataggggtgcttcagttgttggtctgatagtccgatttatgtttctgttgaattggtcactcaactgttatatgtactgtttgtctactaaactctcagatcatgttcatcaagtagactgaactatgaagagcttatagcactaaatgaaaatgaaaggaagtttattggaaaaaagggcacatccaatgttgcaccgttttaagttattaaaagtaaatttggtcgggtcccagaaaacccataatttggatatagatgttaacgctctgacacaatttgttcaagttttcaatgggtaatgtggtgtcatttggttattttaagtgagattttttgttcattctgattacaggctgttctgccctggcctttgctgggcaattttgcagtgaactatgatgtttgccttatgacaaggatacaaaagatgtcactggactatcatttcaaagtagagcaggaatcaggctcatctatgcactcattctttgggttcaacggtaagatccaatatcagaactacttacatgaacttttcatgcctggtcctaacatcgctgatctgcctacaggtactgctggtgtgtggcgggtatcagctattaacgaagcaggaggttggaaggatcgcacaactgtggaagacatggacttggctgtacgggcaagcctcaagggatggcaattcctgtatgttggtgatataagggtatgtctttgtgaggattgtatatgttgatcctttgataagcatatatgaatattttaccctgttttaataatgaatcttgatcaggttaagagtgaactcccaagtaccttcaaagcctaccgacatcagcagcatagatggacttgtggtgctgccaacctcttcagaaaaatggcaacggaaattgccaaaaacaaggcaagccttcttcaatgacagaatggaacatgttacgggattgtcatgcaataatttctttacccggttatatgtgattcagggcgtatctgtatggaaaaaacttcatctactctacagctttttcttcgtaaggagggtcgtcgctcccatcctgaccttcctgttctactgtgttgtgattccgctgtctgtcatggtccctgaagtcagcattcctgtctgggggatggtctacattcccactgccattaccatcatgaacgccatcagaaatcctgggtaagaatgaattctccctgcagagaacgtctatcaatctgcccatcaattttccaagattacagattttatctaatatataccaggtccatccatctgatgcctttttggattctattcgagaatgtcatggccatgcaccggatgcgtgcagctctaaccggcttgctcgagaccatgaatgtcaatcagtgggtggttactgaaaaggttggtgatcatgtgaaggacaagcttgaagtccctcttcttgaaccattgaagccaacagactgcgtcgagaggtaaaaaaaaaattacttacgatcatataccagttaccctctgatatcagagcagtgaaaaactgaaaatccatgcctgaaattacatgtctgtctgatttttcacccttgcaggatttacattcctgagcttatggtcgcgttctacctcctggtatgcgcgtcttacgatttggtgctcggggccaagcactactacctgtacatctacctccaggcatttgctttcattgctctgggattcggtttcgctgggacatctaccccctgttcatagcacagcaatacatcatcttcacttccaaacgatccattcttccccaattcatgattgcatcctgtaactacaagcaattcttttgtaaatgaaaaacaggacaagctctcaccacaaaaatctcacctgtaaacattccagtttttaccattgttgtatgcattttctacagcccctgcagtgcaggtgagcttgatgtgtagatctgaggtatgggcctggaccagagcccatcaggcctaatcacaggtcatgtgaacttgtgaagctcgtatctatgcataatgcaaagaacccatcacccatctatggctagtttctttacacatcgctgtcttccaactgaacagaagcaaactaagctggaagaccaggcaagaactcccaaaccttttgctttcatgccagagagaaaaaatctaactccagttgttggtctatatacgcttggattggatttctctattctttttcttttcttttctttttgcggtttcgatttctatactttgttagttagatcgcagctgtctacttgttacaatcgccacttgttcttgcgatgctaacttttctgcagaggctttcgtctttccacagatgcctgtgatgtaa</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0169500, RefSeq:Os03g0169500