Os03g0177300

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Revision as of 12:22, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os03g0177300| Description = Zinc finger, RING-type domain containing protein| Version = NM_001055679.1 GI:115451086 GeneID:4331809| Length = 391...")
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Gene Name

Os03g0177300

Description

Zinc finger, RING-type domain containing protein

Version

NM_001055679.1 GI:115451086 GeneID:4331809

Length

3910 bp

Definition

Oryza sativa Japonica Group Os03g0177300, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:4068341..4072250

Sequence Coding Region

4068455..4068790,4070150..4070251,4070334..4070498,4070591..4070712,4070906..4071025
,4071194..4071485

Expression

GEO Profiles:Os03g0177300

Genome Context

<gbrowseImage1> name=NC_008396:4068341..4072250 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:4068341..4072250 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgtcggcgcgcgacagggagacggccgtggcgctggcccgcctcgccgccgcgctggacggggcggtgctcggcctcggcacggcggcgctcgccgtcgcctcgtgggtcaagtacctcgccgcgtccgggcagctgcggcgcatcgcctccgcgccggcggccgccatacccgacctccgctcgctcctcgcggagtacggcggcggcggcggcgacggcgaccagccgatcctcgcggtggtgcggggccacgtccgcgccgccccccgaggcaagtacctcgtccccccaggctccggcgagcactgcgtcgtcgcaaagcatacccagctgtgcttgttcaatgaatggagaggcatctttgggtggacctttgatctgcatgctctctttttcaaatcaattaaggagcagattataacatcatttagatgggttccatttgttcttgtagatcctgaaaacatgactggaatggtccatgtgaagttagacagggcaatgcaaccattacctcttacaactgtgtatcataaacttaccccagtcgactcaactccttacacattgtttcagactattattggcaatggttacccaattgcgttgttggatgaggaaaagatacttcctgttggaaaggagattacagcaataggctatattcgacctcataaagcaagtgttgagatcagctcatgctcagaaataccttttttcttgtctgaccttaccaaggatgagatggaagccgagttgtcttctcgtgctaaaacactcttttgggctagtgttgttcttggaacaatgtcagtttgcttgctgggctttgcgacttacaggagctggaagaagatcaaagagcggagggaggcaaggcaagcccaagaggtatttcgacaaactactgatgaagttacagacgatcagtctagcgatgaagaggctggtgaaatgggagacgggcaactatgtgttatatgcttaaggaaaagaaggaaggcagcttttattccttgtggtcaccttgtctgctgctgcaaatgtgcactgattgtggaacgtcagttcgacccattgtgccctatgtgtcggcaagacatccgatacatgataaggatctacgacaattga</cdnaseq>

Protein Sequence

<aaseq>MSARDRETAVALARLAAALDGAVLGLGTAALAVASWVKYLAASG QLRRIASAPAAAIPDLRSLLAEYGGGGGDGDQPILAVVRGHVRAAPRGKYLVPPGSGE HCVVAKHTQLCLFNEWRGIFGWTFDLHALFFKSIKEQIITSFRWVPFVLVDPENMTGM VHVKLDRAMQPLPLTTVYHKLTPVDSTPYTLFQTIIGNGYPIALLDEEKILPVGKEIT AIGYIRPHKASVEISSCSEIPFFLSDLTKDEMEAELSSRAKTLFWASVVLGTMSVCLL GFATYRSWKKIKERREARQAQEVFRQTTDEVTDDQSSDEEAGEMGDGQLCVICLRKRR KAAFIPCGHLVCCCKCALIVERQFDPLCPMCRQDIRYMIRIYDN</aaseq>

Gene Sequence

<dnaseqindica>115..450#1810..1911#1994..2158#2251..2372#2566..2685#2854..3145#ggccccaaatcggcaaaatcgccaccgcacacaggagaggacacagcgacgaaagcagcgaagtcggcggcgcgtcgcgcccccaccgcatcgatcgcctcgccccggtgagccatgtcggcgcgcgacagggagacggccgtggcgctggcccgcctcgccgccgcgctggacggggcggtgctcggcctcggcacggcggcgctcgccgtcgcctcgtgggtcaagtacctcgccgcgtccgggcagctgcggcgcatcgcctccgcgccggcggccgccatacccgacctccgctcgctcctcgcggagtacggcggcggcggcggcgacggcgaccagccgatcctcgcggtggtgcggggccacgtccgcgccgccccccgaggcaagtacctcgtccccccaggctccggcgagcactgcgtcgtcgcaaagcatacccagctggtgagtcgctcgctgagaagtatcttgcgcccggcgcttagagctagggtttacgcttaggtggtacggatgcttagcaagggtgtggtttccaaatccaatcataaattctcaagggttctgtgcgtgcttaatgactgttctcgtgatgatgagattatatgggaacgctgaagattccgattaaactgtagagataagcatgtttaggcattggagtacgaagtagtcgtggagcttttgtttggtttcatgtgctgtattgcaaatctagatagaggccttaaattgtagaaatctttgagaatttcagtgcataaggctataatgtctgtttgttttcattactctctgtgtgtagcttctaggagtagtcgagtaggaaggtacgtggttggtattcccttgtgcataataattagatagtttggggaaagggtagatgcttgtggtttccttgtcaggctattcttgtgctcaattctgaggtttgacaactaattcggaaagtttggcaatattgattattaatatgcaaaatagcatttggcttctgttgcattgggaatcagatggttagtaccgtatatgagttatctggttgcaagatgcctactagctgcaaaatcaatctcctgtaaccctgttatgcttccatggatttgggtcttaggagagtgttgttgttaaagcccggaagtaatggtaaaatgcagcagttttgacttttgatgttatcagttgattcaaattctagtgtgatgttgtaatcatagtagatggttttagaatgaaaaaggactaggaataaattgaagaaaagtttatgattttgttttttgttgctacagtggcatagaagacttgggttaatgttctggattgcttctggatttctgtggaaacagtatcctgaagcaaagttccagttattgattttgttgtaaacttcagaaaaagcaaaggtttatatgccgtggtaatgtggcgcaaactgctaagctacttctgaacacattatgggtatgttcagctgccggggctgcggctgcactgcagccaaccggaacattccggtaagcacaaacacagcagcagccgcagctgcagtcctggcctgccaagttaaggatcctcatggattaaaatatacattgacttgcaattaatttgccatttcccttcttttgttaccaaagtagtatatatgagtacaaatatacaatggcatttactttatcgctatacgcctaaactttgcctttattttttcctttctgcttttacagctgtttacctgttattctttccctgtatggatttctctaactagtgctatgtgatgatgtacttatgcagtgcttgttcaatgaatggagaggcatctttgggtggacctttgatctgcatgctctctttttcaaatcaattaaggagcagattataacatcatttagatgggtataccatctgtactttgtaagctggttattgtttgaataatcttggcctcaaatgttaaccatacctttccttttgcaaggttccatttgttcttgtagatcctgaaaacatgactggaatggtccatgtgaagttagacagggcaatgcaaccattacctcttacaactgtgtatcataaacttaccccagtcgactcaactccttacacattgtttcagactattattggcaatggttacccagtaagttcctggctgtatattggaccttttttttgtatggaatatcagcacagggatatatatcttgagctatgcaattgttccttccatagattgcgttgttggatgaggaaaagatacttcctgttggaaaggagattacagcaataggctatattcgacctcataaagcaagtgttgagatcagctcatgctcagaaataccttttttcttgtaagggttcttttgtttggcatgtgttttcatatcttatctttcttttactgatactccaggattcccagaacattggtagtttataatttatatggctaagatatctcttgtggttaaccgaagtaggacatgcatatgaagatattcttttggttgagttttattgctttttttaactctttaccttcaggtctgaccttaccaaggatgagatggaagccgagttgtcttctcgtgctaaaacactcttttgggctagtgttgttcttggaacaatgtcagtttgcttgctgggctttgcgacttacaggtatcaaactgtgacatttttgcaattgttaatgattttattggttagtattcaattagtatttagttctgaggataatctacagcttgatacttcaatcttactctctttgttagttatttcgtacatcttgtgagttccagatgacttgatgttgtactgatgcaggagctggaagaagatcaaagagcggagggaggcaaggcaagcccaagaggtatttcgacaaactactgatgaagttacagacgatcagtctagcgatgaagaggctggtgaaatgggagacgggcaactatgtgttatatgcttaaggaaaagaaggaaggcagcttttattccttgtggtcaccttgtctgctgctgcaaatgtgcactgattgtggaacgtcagttcgacccattgtgccctatgtgtcggcaagacatccgatacatgataaggatctacgacaattgaggtacgtgacaagttttcttttagccttttggagagggactactcatgatgtttgactcacttaaattgcaacatattacttgggttacactaaggaaaatctgcaagtgtatccttttttggctgttctgtcacaaggaaatgaaattcttgccgatgtgaaaattatttttttggcagacaactcctggttaagctttaagctaaacagtaagtagatgaacagcactgtagatacatgtttaagtgaatttagtttcctgcaataggcataaaatgttaactcttctatggaggagcattaactgttagccgcattagcctgacttatttgatttttagcatctgaaatagtggaatttggagatgacttatttgatatttgttgcaggcttcttgatgttttgctgataacccttcgacactgtatggtcacccagattgtctgcgagcctgaagacctcaactgatcatcctgcgtgcactagtctaagctacttggctaacaaaactatgttaccctgaattttgtgtatatatatgacgtgttagtcactcccaggagaactcatatgggcagagatcaccggatacttttcatagtcgcatagaatcctgtagctagccaaactgccagagtcatgagctgacgcctatagttgcaattacagtactaccaagtttttgttggctctcccttctcatgtctgtgcattctgtaaagatggttttgccgctagcaaaagtatgatggttcggattttt</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0177300, RefSeq:Os03g0177300