Os03g0179000

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Revision as of 12:22, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os03g0179000| Description = Tubulin-tyrosine ligase family protein| Version = NM_001055690.1 GI:115451108 GeneID:4331821| Length = 6662 bp| Def...")
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Gene Name

Os03g0179000

Description

Tubulin-tyrosine ligase family protein

Version

NM_001055690.1 GI:115451108 GeneID:4331821

Length

6662 bp

Definition

Oryza sativa Japonica Group Os03g0179000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:4129086..4135747

Sequence Coding Region

4129179..4129472,4130063..4130320,4130674..4130798,4131338..4131539,4131721..4131846
,4131953..4132209,4132517..4132624,4132691..4132830,4132925..4133092
,4133516..4133673,4133805..4134128,4134232..4134306,4134642..4134711
,4134777..4134934,4135421..4135570

Expression

GEO Profiles:Os03g0179000

Genome Context

<gbrowseImage1> name=NC_008396:4129086..4135747 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:4129086..4135747 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgtcgccggccgccgcctcaccggatgatcgcatccggagctacgaggatttcgcgagggtgcacgcgtacctgctggccgcatccgggatcccgccgtcgctgcaccagcggctttaccgcaagctcgccgacgaggtgttcgacggcggggaggccttctcggtagagccctgcgagggagggaggcagcggaggctcgttctcgccgctgagtggactctagggagggagtccgatgtcttcctcgtcgaccacgcctggtccttccgcctctccgatgcgcttaagcagttgagggaagtaccaggactggctgaaagaatggcagcattgatgtgtgtggatctggacgagagaactgaacttgaagaagcagatgaacaggacaatgggaatggagggagtttggagagtgccttggaggtagttgagaaagaaaggactagaatccaggagaagggaagtgactttgcagcatggctggaacttgaggagcttggaattgatgatgacatgctaatagctttggatctatcttcaaaatttccgaatatggtagccctcaacctatggggaaacaagcttcaggatccagagaaaataatgaaaggaataggggaatgtagaaggctaaaggcactttggttgaatgagaaccctgcactgaaggaaggtgttgacaaagttattcttgacggtctacctgaattggaaatatacaattcacattttacgaggaaagctggagaatgggctttaggtttctgtggggatattattggagcagacaatccctgttcctcagcggaaagcataccattggagaatattgcgtctctcgatctctcagataggtgtatccacaaactaccagtggtgttctctcctagaaaactttcctccctgttgagcttgaacatccgtggtaatcctttggatcaaatgtccagtgacgatctcttgaagttaattagtggatttacccagttacaagagttggaggttgatattcctggctctcttggaaacagtgctatttccattcttgagtgtcttcctaatctatctttgctaaatggtatcaatgtggcaagtataatagagagtggtaagcatataattgattctgcacttaaaccacgtctgcctgaatggtcaccacaagaatcccttcctgaaagagttattggtgcaatgtggttatatcttatgacataccggcttgctgatgaagaaaagatcgatgaaacacctgtttggtatgtcatggatgagctgggttcagctatgcgccacagtgacgatgcaaacttcagaatagcacctttcctgttcatgcccgatggtaaactagcttctgccataagttacacaattttgtggcctgttcatgatgttcatactggagaagagtgcactcgtgatttcttgtttggtgttggcgaggacaaacaacgctcggctaggcttacagcctggttccacacaccagagaattattttatccaggaattcagaaagtacaaggaacaacttcaatcaagcagtatctgtccttcaagaaaagtaacaccggtgaccaaaagtatccgtccaagtgatggccatgcacttcgagtatttaccgacataccccaagtagaggagtttctaacacgtccagaatttgttctcacatctgatccaaaggaagctgacatcatttgggtaagcatgcaagtggattcggaattaaagaatgcactaggacttacagaccaacaatatacaaatcaatttcctttcgaagcttgcctggtcatgaaacatcacttggcagagactatccacaaggcatggggttcacctgaatggcttcaacctacgtataacctggagacacatttatctccactcattggagattactgtgtgagaaagagagatggtatggataacttatggattatgaagccttggaatatggcaagaacaattgacactactgttactggtgatttatctgctatcattagactcatggagacaggtcccaaaatatgccaaaaatatatcgaatgccctgcacttttccaaggaaggaagtttgatctgcggtatattgttttcgtccgcagtatatgccctttagagatatttctttctgatgtgttttgggttaggttagcaaacaatcagtacactctggagaaaacaagcttttttgaatatgaaacccatttcaccgtgatgaattatattggaaggatgaaccatatgaacacaccagagtttgtcaaggagtttgagaaggagcaccaagttaaatggctggagatccatggacgcatacgggatatgatacgatgtgtctttgagtcagccacagctgttcatcctgagatgcagaacccgttctctagggctatctatggggttgatgtcatgcttgataataaattcaatccgaagattttggaggtgacatattgtccggactgcacgagggcatgcaaatatgacactcaagctctcgtgggaagccagggtgtcatcaggggcactgaatttttcaatacagtgtttggctgcctctttctggacgagcttaaagatgtatcgccgctgtaa</cdnaseq>

Protein Sequence

<aaseq>MSPAAASPDDRIRSYEDFARVHAYLLAASGIPPSLHQRLYRKLA DEVFDGGEAFSVEPCEGGRQRRLVLAAEWTLGRESDVFLVDHAWSFRLSDALKQLREV PGLAERMAALMCVDLDERTELEEADEQDNGNGGSLESALEVVEKERTRIQEKGSDFAA WLELEELGIDDDMLIALDLSSKFPNMVALNLWGNKLQDPEKIMKGIGECRRLKALWLN ENPALKEGVDKVILDGLPELEIYNSHFTRKAGEWALGFCGDIIGADNPCSSAESIPLE NIASLDLSDRCIHKLPVVFSPRKLSSLLSLNIRGNPLDQMSSDDLLKLISGFTQLQEL EVDIPGSLGNSAISILECLPNLSLLNGINVASIIESGKHIIDSALKPRLPEWSPQESL PERVIGAMWLYLMTYRLADEEKIDETPVWYVMDELGSAMRHSDDANFRIAPFLFMPDG KLASAISYTILWPVHDVHTGEECTRDFLFGVGEDKQRSARLTAWFHTPENYFIQEFRK YKEQLQSSSICPSRKVTPVTKSIRPSDGHALRVFTDIPQVEEFLTRPEFVLTSDPKEA DIIWVSMQVDSELKNALGLTDQQYTNQFPFEACLVMKHHLAETIHKAWGSPEWLQPTY NLETHLSPLIGDYCVRKRDGMDNLWIMKPWNMARTIDTTVTGDLSAIIRLMETGPKIC QKYIECPALFQGRKFDLRYIVFVRSICPLEIFLSDVFWVRLANNQYTLEKTSFFEYET HFTVMNYIGRMNHMNTPEFVKEFEKEHQVKWLEIHGRIRDMIRCVFESATAVHPEMQN PFSRAIYGVDVMLDNKFNPKILEVTYCPDCTRACKYDTQALVGSQGVIRGTEFFNTVF GCLFLDELKDVSPL</aaseq>

Gene Sequence

<dnaseqindica>94..387#978..1235#1589..1713#2253..2454#2636..2761#2868..3124#3432..3539#3606..3745#3840..4007#4431..4588#4720..5043#5147..5221#5557..5626#5692..5849#6336..6485#tttcaccagtcgctagctcaagcctctaaacccttcttctccccagctcaccccgttcgccgccgccgacgccgctcgccgggggctatcgccatgtcgccggccgccgcctcaccggatgatcgcatccggagctacgaggatttcgcgagggtgcacgcgtacctgctggccgcatccgggatcccgccgtcgctgcaccagcggctttaccgcaagctcgccgacgaggtgttcgacggcggggaggccttctcggtagagccctgcgagggagggaggcagcggaggctcgttctcgccgctgagtggactctagggagggagtccgatgtcttcctcgtcgaccacgcctggtccttccgcctctccgatgcgcttaagcaggtactaatactatccctgggaccgtggtttacttctgtggaatcagttgcgctagtttgttgggaagtgattagtgcgattttggcggcttttgtgctgcctagctgtattatggcccataacgtagtgtattactgatgaatgggagcgcaatgacgacattataacggacttgttgatttaatttgtttactcttgtgacttcaagtagggtttatgctgtactattatgccatttacttttatgttggatacatggaacgattttagcatggtccttgctgattgttaatgtgttattactgtgaattggagtattgactagttaagtgagcgcagctacagttcgaactaacttaagagtgtcatagtttttttttttgggtgctgttaacgtcttgtacttattagctttcttatgctggttaataagtggtcgacactgcaaaatcagggtccgttttattcttttcatgctatcatctgatagctatgtcgactgaccaacaaatacacattttgtgagtgttcatttacagagctttttacttccatgagtgctcttatgctcttattttggtgatatgcagttgagggaagtaccaggactggctgaaagaatggcagcattgatgtgtgtggatctggacgagagaactgaacttgaagaagcagatgaacaggacaatgggaatggagggagtttggagagtgccttggaggtagttgagaaagaaaggactagaatccaggagaagggaagtgactttgcagcatggctggaacttgaggagcttggaattgatgatgacatgctaatagctttggatctatcttcaaaatttccggtccgttccctttatatattatttattcatgtttttactttttagttgccgttgtctgcaacatacaccaaaaagttgtttatctgccttatctgataaaaaaaaaaccctgctgtgcatatctttgtagatgatccaatccaataattatggtttgaattattcttcaggaaaagaaactttccagtgttaaagatcgtttcagtaaaaaaaaaagtactaatgtttagtactggtcttgctccccaaaaacattatgactttgagatgtgtatttttaccataatttcatgtttctttgaattttgtgtatgttctgaagttttccttttattttctttgtatgccattagaatatggtagccctcaacctatggggaaacaagcttcaggatccagagaaaataatgaaaggaataggggaatgtagaaggctaaaggcactttggttgaatgagaaccctgcactgaaggaagggtcagaatcaagccttatttgtttttgttgaagttttaattttgttaattctgttgtgaatatttttcatttcaagtttttcactgttatagcctgataagtccaagtaggaaaataactctgggggtcctgatggaagttgaccagcaactagttattgtggaatcatgtagttatctcaacatgattgataggagaaaattgtaacttctgtgcttgaacagaaagcaagtgaacaacatcttaagataattgagatattattttgcttagttatagtatatgtcctctttaatttgaagaataaaaccatcttaggatgagttggttcatcatgaggtcttcccatggttttagtgggatgacttccttcttcatcatagtaataaacatgtactaacaaacataaacttataaaaaaaatgctgaggtgataaatggatcctcaaaccaaacaagtgaccagttttggttgggccattcgccatctcttcttttgtcatgtggcattctgatgtttttttccttaatgttgatagtgttgacaaagttattcttgacggtctacctgaattggaaatatacaattcacattttacgaggaaagctggagaatgggctttaggtttctgtggggatattattggagcagacaatccctgttcctcagcggaaagcataccattggagaatattgcgtctctcgatctctcagataggtgtatccacaaactaccagtggtaatagctataactggtcttctttattgacattattcactaattcattttcttgatcaaaattattcactaatccatttggcacattttgactttaagatgttattttccaaactgtacaatcttgaaatgtggaactcttttgctgataattcccttctctgcatatacaattcaacaggtgttctctcctagaaaactttcctccctgttgagcttgaacatccgtggtaatcctttggatcaaatgtccagtgacgatctcttgaagttaattagtggatttacccagttacaagagttggaggtattaccagcctaactgcatgtctgtctcataaataagatcaccttctttataaattaataagatgattgcaatcaaggttttcatggcaaatttctttccacaggttgatattcctggctctcttggaaacagtgctatttccattcttgagtgtcttcctaatctatctttgctaaatggtatcaatgtggcaagtataatagagagtggtaagcatataattgattctgcacttaaaccacgtctgcctgaatggtcaccacaagaatcccttcctgaaagagttattggtgcaatgtggttatatcttatgacataccggcttgctgatgaagaaaagatcgatgaaacacctgtttggtatgactacttgcaagttgcaaccttttctcatccctttatggagcattgtgcgtaattttaataacttcgaggtgaagttctgctaaaagtttgaacataaataattatgattgtgtcaactagcccctagccataggtaggtttgcctagtgtagatattcacctttagacgatctagaacattgctttgttttcacttttctgcagtcataaatattgaatcgaatggcatgaaaagaaaattttgtatctgattaacactgtgtctactattctgtgggtttgtgtctggttattcatgtaggtatgtcatggatgagctgggttcagctatgcgccacagtgacgatgcaaacttcagaatagcacctttcctgttcatgcccgatggtaaactagcttctgccataaggtattgtccttcgaacttcagcaacatgttagtaatatgtagcttgctaatacccaacattttcagttacacaattttgtggcctgttcatgatgttcatactggagaagagtgcactcgtgatttcttgtttggtgttggcgaggacaaacaacgctcggctaggcttacagcctggttccacacaccagagaattattttatccaggcaagaaacttagtctgtaaacttgtggtgctgggataaacggtcttatcttttgtccatatgtttatcttcctctcccttttcaaccttttaggaattcagaaagtacaaggaacaacttcaatcaagcagtatctgtccttcaagaaaagtaacaccggtgaccaaaagtatccgtccaagtgatggccatgcacttcgagtatttaccgacataccccaagtagaggagtttctaacacgtccagaatttgttctcagtaaggaaaattccaccctaccttatcgtttatctgtttttttttttggtaagggtcaactgtctttagatagaaataaactcttaacttctgtttatgtaaaacattaactttaagcttgtaatcaacttgtcctcctttcccttggaacttcgtttatgtaggaagcattgatgtagcttgctggtgatgcacattatagaacattcatttatctgggtagtttgaacccaatcgtagatgttcatttgagattaaaagcttttgtgtttgctagcactagtttacctaaggaatcagctaggtattatgttttctctgaccagtcccaaaaaaaatattgatagtgctcttccatcgtatggtttacttatatatggtcaccaaatgttcctcatttgtatctattttgtatgcctgcagcatctgatccaaaggaagctgacatcatttgggtaagcatgcaagtggattcggaattaaagaatgcactaggacttacagaccaacaatatacaaatcaatttcctttcgaagcttgcctggtcatgaaacatcacttggcagagactatccacaaggtgagctactgagctgtttagcttagatctgtttttcagggaaaacattgcgtgtaacttatgtcaaaaaaccatacaataaacaccatattctttcaatggcatctgaaaattagcatcaacttctacaggcatggggttcacctgaatggcttcaacctacgtataacctggagacacatttatctccactcattggagattactgtgtgagaaagagagatggtatggataacttatggattatgaagccttggaatatggcaagaacaattgacactactgttactggtgatttatctgctatcattagactcatggagacaggtcccaaaatatgccaaaaatatatcgaatgccctgcacttttccaaggaaggaagtttgatctgcggtatattgttttcgtccgcagtatatgccctttagagatatttctttctgatgtgttttgggtatgacctttaattcgaatgatacttttgatcgatctcattgttcactgtgatacttactaattattttgtgactctggtgcatataacttattattcgcaggttaggttagcaaacaatcagtacactctggagaaaacaagcttttttgaatatgaaacccatttcaccgtgatggtatgttcaaatttgattgtaactatacatattatttgtgggaccatgaatgttagttgctgtcaggagtgtataagtagtgtgtgttcagatgttctttcctgttctttaagtgattttatgttctggctttatgcttatgttatgtttatagtttttttttttctaagaatgaaaatgtgctttagatgcctaactatatttcccttccagaattatattggaagggatgttggcatcaaatatcatgtgaaagtctagattctagaaatatgatatatttttttctcagaattaaaatgtgattaggatgcttaactatatttcccttccagaattatattggaaggatgaaccatatgaacacaccagagtttgtcaaggagtttgagaaggagcaccaaggtcagcttgcatttttctctttatattatgcgtgtctagttactgacttctgactaaaattttagttaaatggctggagatccatggacgcatacgggatatgatacgatgtgtctttgagtcagccacagctgttcatcctgagatgcagaacccgttctctagggctatctatggggttgatgtcatgcttgataataaattcaatccgaagattttggaggtatgccttacctactttcctatcctgcaaccgctgaaatttcgttgcctccccctattgttgacatgacatgctgaaacctgcatatctacacaacaattgtagtgccgcggcacatggttaaagttatatagtactgacgtgtgaaagccattgcccatatgcttcactgaactaatgaaagcccttgcgcattctcattttatgcccagctcagaattaatttcagaagatatgccagtatgttgatttagatattcttgttgtagcctcacatacatagtatgtcaggcaagatgtggtacaaaagtcaggaagtaacactcagttaatctctgtttgccacccaagcataagcttccaattgaaatttgactattacatttggaattttatagatgttcagctattgtattatataagcattaaaaccttcttcctagtaattcctctcactgttccgaaaatttataaaatgaaatgcaggtgacatattgtccggactgcacgagggcatgcaaatatgacactcaagctctcgtgggaagccagggtgtcatcaggggcactgaatttttcaatacagtgtttggctgcctctttctggacgagcttaaagatgtatcgccgctgtaatcaccacaacaaggttgctgtaacaccgaagttcaacacaatacacgcacatgtgagttgtgatcctgtcgttttatatgccatacatatcaaatttgctcagtacaattacaaagggggtgtgatgctgcctcctgcctgtaccatgcttcggatcagattgaaatgagcttgacg</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0179000, RefSeq:Os03g0179000