Os03g0210400

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Revision as of 12:25, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os03g0210400| Description = Protein prenyltransferase domain containing protein| Version = NM_001055875.1 GI:115451478 GeneID:4332022| Length = ...")
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Gene Name

Os03g0210400

Description

Protein prenyltransferase domain containing protein

Version

NM_001055875.1 GI:115451478 GeneID:4332022

Length

6593 bp

Definition

Oryza sativa Japonica Group Os03g0210400, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:5788184..5794776

Sequence Coding Region

5788414..5788554,5788654..5788758,5789020..5789283,5789651..5789800,5789912..5789992
,5790323..5790439,5790521..5790673,5791268..5791411,5791912..5792272
,5792524..5792691,5793213..5793442,5793930..5794036,5794117..5794465

Expression

GEO Profiles:Os03g0210400

Genome Context

<gbrowseImage1> name=NC_008396:5788184..5794776 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:5788184..5794776 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggagcaagatcagggcgttgctgccgcggcggcgtcggagaatccaagcgccggccagggcgctcacgattccggtagcgcgggggctggcgccgcagcctcttccattgcgtctttcgattcggccactgcaaaccctgacgcaaacgtttacagtcagaatccgagctccgtcccgcaagccgatggcgctcagggagcggatgcctccgtgtaccccgccgaccacgcgccgctaaacgggacatcgggccaggtggtagattaccagtctgcgggggctgcagagaacggcgccgccacaaacgagatgggtgagccggttcccgagcagtcctatgcggatgctgtgctttcagcagaagaagcaaggttgtggaatgccgttacagcgaattgcttagacttcaatgcttggactgcgcttattgatgagacagagaaaactgctgagagcaatatcttgaaactaagaaaagtgtatgatgcattccttgcggagttccctctctgctttggatactggaagaaatatgcagatcatgaagcacgtcttgatggtgtcacaaaagttatagaggtttatgaacgtgcagttcttgctgttacttattccgtggacatttggtataactattgtcagtttgcaatttctacatatgaagacccagatatcatcagaagactgttcgaacggggtttggcatatgttggaacagactatcgttccaatattttgtgggatgagtacattaagtacgaagaatcactgcaggcatggagtcatctagccatcatatatacgagaatattggagcatcctataacacagcttgatcggtatttccattgcctaaaggagttggccgcaacacgaagtttatcagaaatacttacctcagaggaagctgccatgtattctgttactgccgagaacactgctcagacgcttgatggagagacacaacctggtgatgtagatatgtctgctcaacccgaaatttcaggttcaacagaggcagataacctggcaaaatacgtttctgttagagaagaaatgtataacaaggctaaagagtatgagtctaagattattggttttgagctagcaattagaagaccatattttcatgtcaagccccttgacaatccagagcttgaaaattggcacaactatcttgatcttattgagaaagaagaagacataaataaggttatcaagctgtatgaaagatgtgttattgcatgtgctagttattcagagttttggatccgttatgtgctatgcatggaagctagaggaagcatagaactagcaaacaatgctctggctcgtgccactcatgtttttgtcaagaagcaggcagagatccatctgttcagtgcaagattcaaggagcttagtggagatgtctctggagcacgtgtagaataccagcatctttattctgatctgtaccctggccttttagaagccattgttaagcattctaatatggagcaccgattgggagataaagaatctgcttgctcaatttatgagaaggccattgccgctgaaaaggaaaaggatcggagccagattttgcctactttgctgattcagtactcacgattcttatctttggccatcggtgacatcgagaaggcaaaggagacgctaactggttttctcgaacaatgcgatttgacaaaatcaattattgaggctatcatgcaactagagtcgatccttccatctgaaaagcgtattgaatttttagattcactggtcgagaagtttcttacagctgaaccaaccgaaggggaagtcacaagtctagctgacaaggaagacatatcttccatatttttagagtttttggatctatttggggatgcacaagcgatcaagaaggctaccaatcggcatcttactcatttttcgcggaagagaagcatgctgtcatcaaagaagcgaagagctgatgatgttatcatgtcagacagagataaattggctaggattggggatggtactcagccagttgtgggaactgatccaaatgctcataatcctccagtttggccagcgacatctgaagcatcggggcaacaatggggagctgcttatgcaccacaggccacttatcctgcgtatggaacttacgactacagccatcaaatgcctcaatctgctcctcaagcagctgcttacggcgcctatcctccaacataccccgctcaggcctacacacaacaaacctatgcacaaccttcagcaatggcggtggcggcaccagcacccgcagtggcaccggcggcagcttaccctcagcaacctgttgcagctcagcaaccatattatggaacaggaacatactactga</cdnaseq>

Protein Sequence

<aaseq>MEQDQGVAAAAASENPSAGQGAHDSGSAGAGAAASSIASFDSAT ANPDANVYSQNPSSVPQADGAQGADASVYPADHAPLNGTSGQVVDYQSAGAAENGAAT NEMGEPVPEQSYADAVLSAEEARLWNAVTANCLDFNAWTALIDETEKTAESNILKLRK VYDAFLAEFPLCFGYWKKYADHEARLDGVTKVIEVYERAVLAVTYSVDIWYNYCQFAI STYEDPDIIRRLFERGLAYVGTDYRSNILWDEYIKYEESLQAWSHLAIIYTRILEHPI TQLDRYFHCLKELAATRSLSEILTSEEAAMYSVTAENTAQTLDGETQPGDVDMSAQPE ISGSTEADNLAKYVSVREEMYNKAKEYESKIIGFELAIRRPYFHVKPLDNPELENWHN YLDLIEKEEDINKVIKLYERCVIACASYSEFWIRYVLCMEARGSIELANNALARATHV FVKKQAEIHLFSARFKELSGDVSGARVEYQHLYSDLYPGLLEAIVKHSNMEHRLGDKE SACSIYEKAIAAEKEKDRSQILPTLLIQYSRFLSLAIGDIEKAKETLTGFLEQCDLTK SIIEAIMQLESILPSEKRIEFLDSLVEKFLTAEPTEGEVTSLADKEDISSIFLEFLDL FGDAQAIKKATNRHLTHFSRKRSMLSSKKRRADDVIMSDRDKLARIGDGTQPVVGTDP NAHNPPVWPATSEASGQQWGAAYAPQATYPAYGTYDYSHQMPQSAPQAAAYGAYPPTY PAQAYTQQTYAQPSAMAVAAPAPAVAPAAAYPQQPVAAQQPYYGTGTYY</aaseq>

Gene Sequence

<dnaseqindica>6223..6363#6019..6123#5494..5757#4977..5126#4785..4865#4338..4454#4104..4256#3366..3509#2505..2865#2086..2253#1335..1564#741..847#312..660#acctttcccacgccgctgatactgatagcctcccaccgatccaattccaaccctaaccctccgcctccgcctcgcctcgccggcgccgaagccctcgcccgctcgtcggcgacccctcggcacctcatcctccccgacgcgcgcgcctccgctcgccggtgcgtgctccgtgatttatcctctcttgttctagctcttttacggcttcgcttttggtggttttttttggtgtaattttttttatcagccttcgccaactgttcccccccgtaggggcgagagggattcgtcggccacggtccgcagccgcaatggagcaagatcagggcgttgctgccgcggcggcgtcggagaatccaagcgccggccagggcgctcacgattccggtagcgcgggggctggcgccgcagcctcttccattgcgtctttcgattcggccactgcaaaccctgacgcaaacgtttacagtcagaatccgagctccgtcccgcaagccgatggcgctcagggagcggatgcctccgtgtaccccgccgaccacgcgccgctaaacgggacatcgggccaggtggtagattaccagtctgcgggggctgcagagaacggcgccgccacaaacgagatgggtgagccggttcccgagcagtcctatgcggatggtaatgtttcgcacatatgaacactcttcactcgctatcgggcttgattgtacttgctaattcattgtttcttttcgcagctgtgctttcagcagaagaagcaaggttgtggaatgccgttacagcgaattgcttagacttcaatgcttggactgcgcttattgatgagacagagaaaactgctgaggtaatgtttttactgttgccgtcaccataaaatctgttattactttattctgcaacttgttgtatgcataggcactctaaatttgtaacttctcattttctcattcattcacatgaatgatagatttaccttatgattatatgcatctatatcttggagaatctggttccatgaatctgccttgtggatttgcatcatctcatataggtaatctatgtttatataggttcacaatgcttgatgtgttttggcatagtttgccatgttgagctgtcatttgtaactttactttcctatctctcttattgaaatggtagagctcttatccaagtttctcagggaaaaaaatgaattgttatcatttgtcctatgatagtttttgtaaatatttgttcatttatgttttagttaagtaaattaagtcggaattatatggcaagagtagttctttttgtgctaataattttttttatctattcttgcccagagcaatatcttgaaactaagaaaagtgtatgatgcattccttgcggagttccctctctgctttggatactggaagaaatatgcagatcatgaagcacgtcttgatggtgtcacaaaagttatagaggtttatgaacgtgcagttcttgctgttacttattccgtggacatttggtataactattgtcagtttgcaatttctacatatgaagacccagatatcatcagaaggtagcaatcacactctatctattcctatttgtttcctcttgtagctgatagctgtgtgtgattcatgtccattttttggattgctgccaaaaatcttccctaccaagtcttttgccaacttaaatagtattgcacttgtttgaattgaagccaattttggcaaccctaccaaaatttggctcctaattagtagcaaaccaaaggacacagttgtagcaaaactctacccaccaaaatttggctgcaccaattcttgcctaggttttggcagtaccaaattttgggagggtagagaactaaactcaccctataggaaatctatgttggaatgtttgatatatgtgccttcgaatatactagcaatttataagtaaacttgggacttttctgtcaagaatgatatgatccttcgtggatgtaaatgtaggatgtagataccactgagtgcagcagccggccatcattcattgtaaaagattttatttctacattaacaaattttctcacattgtcttttacagactgttcgaacggggtttggcatatgttggaacagactatcgttccaatattttgtgggatgagtacattaagtacgaagaatcactgcaggcatggagtcatctagccatcatatatacgagaatattggagcatcctataacacagcttgatcggtatttccattggtaagatcattgggtatttgtgcagtttatttttgaattgtattactttttatgaataagtcgttgattagtggtctatcaattgtcagggtgattaaggaattagagtcatataaaccaattacaacaaaagaaatagccatataaatgtaacgtggtattttggatgataattgttatattcttaatgaaacatagtgaagtaaattttatacttgtactaatggtcatttgttttaatttctactcagcctaaaggagttggccgcaacacgaagtttatcagaaatacttacctcagaggaagctgccatgtattctgttactgccgagaacactgctcagacgcttgatggagagacacaacctggtgatgtagatatgtctgctcaacccgaaatttcaggttcaacagaggcagataacctggcaaaatacgtttctgttagagaagaaatgtataacaaggctaaagagtatgagtctaagattattggttttgagctagcaattagaagaccatattttcatgtcaagccccttgacaatccagagcttgaaaattggcacaactatcttgatcttattgagaaagaagaagacataaataaggtatgcttttgcaatggaaatagtcctttactttttcattcagtagacttcatgcagtacctggagtcttgtaacttacaattttagtcttattggctccattatatgctttaacggctagtatttggacgaagcttcctttgtaatggcatattgaactgaggatagagcatggacataatgtttggtttcgatgaggctaagtactccaaactttcatttgtcagtggccgttctgggttaatgatatgtgctaccaaatatcagttgtttgaatttttaatctcatatatgcaggtaattgcttaatgctctccttcttaaccatctatctatcaggcaaggatggtccctccttatggaggggcctccctaatcagctaatggagtaacctgtgtgaacttcttctgtttttttgtcaatattttattgttattccctttatttcctttattacttccgctcaagttttctgatgttacccaatatttgttttcaggttatcaagctgtatgaaagatgtgttattgcatgtgctagttattcagagttttggatccgttatgtgctatgcatggaagctagaggaagcatagaactagcaaacaatgctctggctcgtgccactcatgtttttgtcaaggtatcacatatacagtcagtataatttaccttttaccattatgttttttctcctgcacacttttttgatatggatcttgtgtatatccttctatctacatgccactaacatcatcatacgatatcaatcagcaaggtctgacaactgatctaaaagttctgtttctcatttcatcttgtgttctttcactgtcaaagattctgtatctgcgaaatgaaaatcttgtgattcttgattctatataggtactctgcatggagataaataagaaatataagaaagtggtctgaattattagtttgcaggctgcttaacgcatatctaccctttacttgtaaattgcttttgttattgtgatttgagtagacagtagactccttctgaaaccttgtttgattattgacgtgctgaaaacacaaagaataaactaatagcatctgtctgtcatgattaccatttgccattgataatctgattggggcctgagactgtatcgacaatcagtattttatttattgcaacgtaatgcatgtagtttatactgcaatcgttttagatttactgaataacactgtttcttctattctttaacagaagcaggcagagatccatctgttcagtgcaagattcaaggagcttagtggagatgtctctggagcacgtgtagaataccagcatctttattctgatctgtaccctggccttttagaagccattgttaagcattctaatatggagcaccgattggtatctcccgaatcaaactacggcattattgtttcctttttttttgtgttaaaaggttcatttatctttttcatcttgcagggagataaagaatctgcttgctcaatttatgagaaggccattgccgctgaaaaggaaaaggatcggagccagattttgcctactttgctgattcagtactcacgattcttatctttggtaagtgtatctttattgctacttttgagataacagaaatattgcacatgtctcttttgtgtcatctgacactgttaatggaacatgcatgattagctgataagaaaacactcaaaacagcattaaatagaatgttgtcatttggcattcttcattatttatgtttgaagtgttgtatatatattaaacgtttgagcctacgggatgaccagttgtgtcatgttaactcgttaagtggctgattggatctgattacaattattttccccttcctttttgtctccactagctctttttgcagaatttgatgtatttcttaaaaatgtgcaggccatcggtgacatcgagaaggcaaaggagacgctaactggttttctcgaacaatgcgatttgacaaaatcaattattgaggtacgatttttccccttctaaatctacttgagttttctatttaccaccttcgctttcttcgtacccgctgctattctctgcttctgtatcattttgtccattttttggcaggctatcatgcaactagagtcgatccttccatctgaaaagcgtattgaatttttagattcactggtcgagaagtttcttacagctgaaccaaccgaaggggaagtcacaagtctagctgacaaggaagacatatcttccatatttttagaggtaattcttcaaagctacatggcagttctctttaaagtatcttccatattaagttacccatcttgaagtttttagctcaggagcattaaaactgcaaattagagatagtttatgtatgttttgttttttgtttgcctgcctgttaatgagatactggagacctactagtagctacggcctcagtactagtttgtctagcagagaagaatggatcataattctctaggaatatgaatcaaatgattgcactgcttgtacttcttttcctaatctgaattgtcctgcatggcagcatctgttttatttgttcttttggttgacccactacgattgctgagttagtgacgtgtgtttaaattctctacagtttttggatctatttggggatgcacaagcgatcaagaaggctaccaatcggcatcttactcatttttcgcggaagagaagcatgctgtcatcaaagaagcgaagagctgatgatgttatcatgtcagacagagataaattggctaggattggggatggtactcagccagttgtgggaactgatccaaatgctcataatcctccagtttggccagcgacatctgaagcatcggggcaacaatggggagctgcttatgcaccacaggtttttatattcctataatcctaccaatcatttatttatgtcctgaacgtgtgtagcatgttttctatgctgttgcaaaaaagtgaaaatatattttggtttctttaaacgtcttctgagttggtagactttcctctactgtttatatcctcgcttgctatgtctctgctgtaatctgtcacttgtactatctctctttgttatagtatttcttttaactatttgttgatgcgattgactcttaacctgtttgcattgcaggccacttatcctgcgtatggaacttacgactacagccatcaaatgcctcaatctgctcctcaagcagctgcttacggcgcctatcctccaacataccccgctcaggtactgaagatgttctccatctaaacttgtagagtacctctggatttgaactgctttgtgcttagtaatctgatcaaattgtgctcgaaattattttaggcctacacacaacaaacctatgcacaaccttcagcaatggcggtggcggcaccagcacccgcagtggcaccggcggcagcttaccctcagcaacctgttgcagctcagcaaccatattatggaacaggaacatactactgatctgtagactgattcaagagggtgctacgaaagtctgtttatttgttctcgcgcttgtatcgctgcagcctaaattagcatattttactgatgatactgtaggtcgaagccatggcaggaccctttgtattagtactactagcgttaccagaagactagttaagcacatgatttgtatagcacctcgtgacattttcctgctagcataatggtccattgttttcatctct</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0210400, RefSeq:Os03g0210400