Os03g0213100

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Revision as of 12:26, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os03g0213100| Description = Similar to Sec61p| Version = NM_001055894.1 GI:115451516 GeneID:4332042| Length = 3485 bp| Definition = Oryza sativ...")
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Gene Name

Os03g0213100

Description

Similar to Sec61p

Version

NM_001055894.1 GI:115451516 GeneID:4332042

Length

3485 bp

Definition

Oryza sativa Japonica Group Os03g0213100, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:5923374..5926858

Sequence Coding Region

5924454..5924797,5924996..5925223,5925302..5925656,5925741..5925865,5925992..5926127
,5926224..5926463

Expression

GEO Profiles:Os03g0213100

Genome Context

<gbrowseImage1> name=NC_008396:5923374..5926858 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:5923374..5926858 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggctggtggctttagggtattgcatcttgtcaggccttttctggctttcctgcctgaagtacagagtgctgataggaaaataccatttagagaaaaagtgatctacactgttatttccctattcattttcctggtatgcagccagctaccactgtatggcatccattcaactactggagctgatcctttctactggatgcgtgttatccttgcatcaaaccgtggtactgttatggagctgggtatcactccaattgtgacatctggcatggtaatgcaacttctagtgggatcaaagatcattgaagttgacaacagtgtgagagaggatcgtgctctgctgaatggcgcacaaaagttacttggtatcctgattgcaattggggaagctgtggcatatgttttgtctggaatgtatggcagtgtaagccagcttggaactggaaatgccatcctcattatacttcagcttttctttgctggcatcattgtcatctgtctggatgaacttctccagaaaggttatggtttgggttctggcatttctctctttattgctaccaatatctgtgagaatatcatctggaaggcatttagccccacaactatcaacagtggccgtggtgctgagttcgagggggctgtcattgcattgttccatctgttgattactagaaccgacaaagtccgtgccttgcgcgaggctttctaccgccagaatcttccaaatgtgaccaacttgcttgctactgttttagtcttcctcatagttatctacttccaaggcttccgtgttgtgctaccagtgagatccaagaatgcccgcggtcaacaaggctcatacccaattaagctgttctacacttcaaacatgcccatcattctgcattctgcactgattaccaacctctatttcatatcccagcttctctacaggaggtacagtggaaatttcctagtcaaccttattgggaaatggaaggaatctgagtactctggccattctgttcctgttggtggtcttgcttactatgtaactgctccatcaagtttagctgatgttctcgcaaatccattccatgcactgttctatgtggtcttcatgctgtcagcttgtgctctcttctcaaagacatggattgaagtatctggttcatcagcaaaggatgttgctaaacagctcaaggagcaacaaatggtgatgccaggccatcgtgagtcgaatttacagaaagaattgaacagatacatccctacagctgctgcatttggtggagtctgcattggtgcattgactgtcctagctgatttcatgggtgcaattggttcaggaactgggatactgctcgctgttacaatcatctaccagtattttgagacattcgagaaagaaagggctaccgagctaggtttctttgggttttga</cdnaseq>

Protein Sequence

<aaseq>MAGGFRVLHLVRPFLAFLPEVQSADRKIPFREKVIYTVISLFIF LVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGMVMQLLVGSKII EVDNSVREDRALLNGAQKLLGILIAIGEAVAYVLSGMYGSVSQLGTGNAILIILQLFF AGIIVICLDELLQKGYGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIA LFHLLITRTDKVRALREAFYRQNLPNVTNLLATVLVFLIVIYFQGFRVVLPVRSKNAR GQQGSYPIKLFYTSNMPIILHSALITNLYFISQLLYRRYSGNFLVNLIGKWKESEYSG HSVPVGGLAYYVTAPSSLADVLANPFHALFYVVFMLSACALFSKTWIEVSGSSAKDVA KQLKEQQMVMPGHRESNLQKELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILL AVTIIYQYFETFEKERATELGFFGF</aaseq>

Gene Sequence

<dnaseqindica>1081..1424#1623..1850#1929..2283#2368..2492#2619..2754#2851..3090#gcgcgttgtttcttctcctctcttcgtctctctctctctctcgtcgcgttggatttgacgagctcgtcaccaccggctgcggcggcgaggcaggcatccgcactcctcggcgtcgggccgtcgtcgttgtccgctacctggtagatccgcgtgttcccttcctcgtcatgtctcgtgtctggatctcgcggaggcgatgcgtttcagattcagtggcttgtcgttagaattacgtttttgcggcgaccactttttgatcggtgaaaaagcgggaagtgggtgttccggtggtggattcgtgctcagtttggggatttttttttgtgggggctgatctgggtgctacgtgcgcgcgtgtgatggaacgctcggttggtcgtgcggtgtagatgtaggcctgatgctagcgaaatttgttctagatccaagctggttgatccatgaggattgctttagaaaaaaattttagggatgccatagttttagtggccttcatatttgtcatatgagcgttacatggccagcagccagttaccctgttcatttatcgggcgtgtgattcatctatgcatgttgtcagattgacatggaaagcgtgtcatgtattcattctgtgattcatatgatggatgcggatcatcagcttccttttgtgcagcccgggcctagccagagttatctttttcaccgaactgtttcaatcaagtctgcatgaggaactgagaattttttttattattatttcattgtgatgtgatcatattgtttgatttcaagttcatgcagctgaataagcattcatgtttgcacattatttaagaaagaagcctattattgttcatgttaatgtgggtttccattttttttttcaattgcgccctcctgtttatggtgaagaataacttctctagtttgttaggttctattatgattcagtgttttttttcttaaatgaagtgtgatatactgtctaaagtctgaactaccaagtttgaaatttttttacaagacacatgttttataattttgtgtgcattgtacaaaatcttgacctatttttttgcttggtcacaggaaaagatggctggtggctttagggtattgcatcttgtcaggccttttctggctttcctgcctgaagtacagagtgctgataggaaaataccatttagagaaaaagtgatctacactgttatttccctattcattttcctggtatgcagccagctaccactgtatggcatccattcaactactggagctgatcctttctactggatgcgtgttatccttgcatcaaaccgtggtactgttatggagctgggtatcactccaattgtgacatctggcatggtaatgcaacttctagtgggatcaaagatcattgaagttgacaacagtgtgagagaggatcgtgctctgctgtaagtattatgagattaacactatgttctttactattacctgaaccttgaaacttagtgccttatttactatggtctgctgtttgtagcccaccatatttcagcgaatggctattgattaaatgctactacgtatctgattcatgtttaccatgtcttttgattatatttgttacgctaatgtacttttttacccaggaatggcgcacaaaagttacttggtatcctgattgcaattggggaagctgtggcatatgttttgtctggaatgtatggcagtgtaagccagcttggaactggaaatgccatcctcattatacttcagcttttctttgctggcatcattgtcatctgtctggatgaacttctccagaaaggttatggtttgggttctggcatttctctctttattgctaccaatatctggtgagcacattgaactttgttcttctctattgttgacattttctattcaacttgacttatggaaatctttctctgtagtgagaatatcatctggaaggcatttagccccacaactatcaacagtggccgtggtgctgagttcgagggggctgtcattgcattgttccatctgttgattactagaaccgacaaagtccgtgccttgcgcgaggctttctaccgccagaatcttccaaatgtgaccaacttgcttgctactgttttagtcttcctcatagttatctacttccaaggcttccgtgttgtgctaccagtgagatccaagaatgcccgcggtcaacaaggctcatacccaattaagctgttctacacttcaaacatgcccatcattctgcattctgcactgattaccaacctctatttcatatcccaggtctgaacttcaattccactgctttagcaagataaatctttaatgtttgtgtttagcattaacatgtttgtattgctttggcagcttctctacaggaggtacagtggaaatttcctagtcaaccttattgggaaatggaaggaatctgagtactctggccattctgttcctgttggtggtcttgcttactatgtaactgctccatcaaggtgaagaatcaatttcatcaatgaggccttcatctctttgtgctcgcaattttagtttctgttactgtttgataaaatttacttttaattatacttaccttggcatatgcactggaaatgttgcagtttagctgatgttctcgcaaatccattccatgcactgttctatgtggtcttcatgctgtcagcttgtgctctcttctcaaagacatggattgaagtatctggttcatcagcaaaggatgttgctaaacagctcaaggtaaaataaaacaaaactattttctatatctggtctggaatgcagaattatcatgcaagagctacctttaaaccaccaacctttgcaatttaacaggagcaacaaatggtgatgccaggccatcgtgagtcgaatttacagaaagaattgaacagatacatccctacagctgctgcatttggtggagtctgcattggtgcattgactgtcctagctgatttcatgggtgcaattggttcaggaactgggatactgctcgctgttacaatcatctaccagtattttgagacattcgagaaagaaagggctaccgagctaggtttctttgggttttgatcaccttagctgtataactcctagctggaacttcttgcgagtcgcagtgctgcttggccggctgtcatgtaatgggagacctcagaatcagcttaggttgccgacttacttacaatgagaatcttgtagcagtatgcgttttgttcatgccagtgtatggagttatttgtcctgctcctgccccgagtacagcaatggccatcgtagtaactggatgtgttgcgatcaatttttattatcttttaaactggatagtatatttgattcctgatctcttttttgctgcaaccttcgtgactaatgtttctgatcactggaaactaatctggtgttatgtctccctgctgcttctcttattgcaagtgtttggccacatggataaaatgttaactttc</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0213100, RefSeq:Os03g0213100