Os03g0215800

From RiceWiki
Revision as of 12:26, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os03g0215800| Description = Pyridoxal-5'-phosphate-dependent enzyme, beta subunit domain containing protein| Version = NM_001055914.1 GI:11545155...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os03g0215800

Description

Pyridoxal-5'-phosphate-dependent enzyme, beta subunit domain containing protein

Version

NM_001055914.1 GI:115451556 GeneID:4332062

Length

3379 bp

Definition

Oryza sativa Japonica Group Os03g0215800, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:6112976..6116354

Sequence Coding Region

6112986..6113207,6113316..6113390,6114319..6114462,6114684..6115142,6115229..6115464
,6115756..6115972

Expression

GEO Profiles:Os03g0215800

Genome Context

<gbrowseImage1> name=NC_008396:6112976..6116354 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:6112976..6116354 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcggctgcgacggcggcggcgggagcagccgccgccgtatccctgctcgcgtgctacctcctcctacacagggacggcgccaagctgccgtgggtcgggcccacgacgaggtcctcccgctcgagcggccggcggacgcggcggaagggcctcgtggaggccatcggaaacacgcccctcatccgcatcaacagcctctccgacgccacagggtgcgagatcctggggaaggccgagttcttgaatcccggaggcagcgtgaaggaccgtgtggcagttaagatcatcgaagaggctctggaatctggtgatcttctctgtggtggtacagtaacagaggggagtgctggaagcacagctattagcttggccattgttgctcctgcttatggctgcaaatgtcatgttgttattcctgatgatgctgccattgagaagtctcaaataatcgaggcgctcggggctacagttgaacgagtgcgccctgtttcaattacacatagggaccattttgtcaatattgctagaagaagggctttagaagcaaacaaatcagcagcggcccagagagagtcaaggtacaaagaaactaatggttcagcgcatgtcaatactagaataatgcacagcaagataacagcaagcaaaggggagtcaaacaaggcactaactaactgttcagccaattctgaaatacaatataacgggaagtgtgatcatgactctgattcaaagggaggtttctttgctgaccaatttgagaatatggcaaactaccgagcccattatgaatggactggtcctgagatatggcaacaaagtaaagggacactgcatgcctttgttgctgcagctggcactggtggcacaattgctggagtctcacggtatcttaaggaaaagaacacaaacatcaaatgcttcttaatggacccacctggatctggtctgttcaataaggttactagaggggtgatgtacacaaaagaggaagctgagggcaaaaggctgaagaatccttttgacactattactgaaggaattggaatcaacagggttacaaaaaattttatgatggcggaactggatggagcttaccggggaacagatagggaagctgttgagatgtcaaggttcttgttgaaaaatgatgggctgttcgttgggagttcttcagccatgaattgtgttggtgctgtaagagttgctcaagatttaggtccaggacatacaattgtgacaattctctgtgacagtgggatgaggcatctaagtaagttcttcaatgaccaatatttggctaaccatggcctgacaccaacagctaccggtctggaatttcttgattga</cdnaseq>

Protein Sequence

<aaseq>MAAATAAAGAAAAVSLLACYLLLHRDGAKLPWVGPTTRSSRSSG RRTRRKGLVEAIGNTPLIRINSLSDATGCEILGKAEFLNPGGSVKDRVAVKIIEEALE SGDLLCGGTVTEGSAGSTAISLAIVAPAYGCKCHVVIPDDAAIEKSQIIEALGATVER VRPVSITHRDHFVNIARRRALEANKSAAAQRESRYKETNGSAHVNTRIMHSKITASKG ESNKALTNCSANSEIQYNGKCDHDSDSKGGFFADQFENMANYRAHYEWTGPEIWQQSK GTLHAFVAAAGTGGTIAGVSRYLKEKNTNIKCFLMDPPGSGLFNKVTRGVMYTKEEAE GKRLKNPFDTITEGIGINRVTKNFMMAELDGAYRGTDREAVEMSRFLLKNDGLFVGSS SAMNCVGAVRVAQDLGPGHTIVTILCDSGMRHLSKFFNDQYLANHGLTPTATGLEFLD </aaseq>

Gene Sequence

<dnaseqindica>11..232#341..415#1344..1487#1709..2167#2254..2489#2781..2997#ccccgccgagatggcggctgcgacggcggcggcgggagcagccgccgccgtatccctgctcgcgtgctacctcctcctacacagggacggcgccaagctgccgtgggtcgggcccacgacgaggtcctcccgctcgagcggccggcggacgcggcggaagggcctcgtggaggccatcggaaacacgcccctcatccgcatcaacagcctctccgacgccacagggtgcgaggtagactcggggggtgcgtccgtgtttgtggctccggttttactggctggtttggtttggttcggttgagctgatgaagtggtggtgttgcttttggttgggttgcagatcctggggaaggccgagttcttgaatcccggaggcagcgtgaaggaccgtgtggcagttaagatcatcgaagaggtaatttgttcatgttggttcaaattgatccaaatttgtagatagattgaatggggtagctgagaagtacagctcacggagaaaagtttcagaattgctactttgctggagtatgatttccttaatgaaaagctgcataaaatggagtatttcttttgagtgagatacaatatgaggtatgttcagattagttccgcagatactactcttgcatagcattcaaaagtttcagcttcgttcaactgtagaatgaattgcggcaaaaccttgttcaagcgtagaatgaattgcaacagaactttcttgttatactgccttctgaggtttcgtgaccgattcatgtaatgttggctacatgtacttgccttttcttcttcttcttcttctttttttttttgagaaagtacctgtatatgcatcttttgagaatctctacctctggactttctacttcagtcattttgtgaggttgagagcaggaattagttgacttcctccttattgtaagatgtggtgataaatgcttacttgtattaactctagcctgtagttgtctatccttcaaaaagcaattgtaaggtggaagtcgataacagggtggtatcaagatttttccatcatcttttggaacctgtaaaactatgttgtcagtgacccaacaattttagaattgcagttctgaaaaaaagcactcatgggaaaaacattatgcggttttatttctagtattattggattgaaacaaacaggtaataggattttatctaaattcttttgtttcaaatttcaccagatgaatcatggattcatgagatagtttgctccgtgtcatgttgtttggtaatttcggttcctatgatgttgttatatactaacaaccgtatatcatatcctttatatttgatcctggaactcttgtcattaccaggctctggaatctggtgatcttctctgtggtggtacagtaacagaggggagtgctggaagcacagctattagcttggccattgttgctcctgcttatggctgcaaatgtcatgttgttattcctgatgatgctgccattgagaaggtagtaagtcacatactgttcataattcttataacatactccatggtgtagtatctgtgattgctacttgagttatccatttttttcatggctagctgaactaaactatgctagatgcttctgttaagattgttccaaagtacaaacagtatttcaacatcagaaagcctgtaattgcttatgctcctgtatgtttagttttactaaaactcttttcacagtctcaaataatcgaggcgctcggggctacagttgaacgagtgcgccctgtttcaattacacatagggaccattttgtcaatattgctagaagaagggctttagaagcaaacaaatcagcagcggcccagagagagtcaaggtacaaagaaactaatggttcagcgcatgtcaatactagaataatgcacagcaagataacagcaagcaaaggggagtcaaacaaggcactaactaactgttcagccaattctgaaatacaatataacgggaagtgtgatcatgactctgattcaaagggaggtttctttgctgaccaatttgagaatatggcaaactaccgagcccattatgaatggactggtcctgagatatggcaacaaagtaaagggacactgcatgcctttgttgctgcagctggcactggtggcacaattgctggagtctcacggtatcttaaggtttgcatgcttcttatgttatttcttctgtatatttctttctcacatgtagaccttttttatgcctatgctataatcaaatataggaaaagaacacaaacatcaaatgcttcttaatggacccacctggatctggtctgttcaataaggttactagaggggtgatgtacacaaaagaggaagctgagggcaaaaggctgaagaatccttttgacactattactgaaggaattggaatcaacagggttacaaaaaattttatgatggcggaactggatggagcttaccggggaacagatagggaagctgttgagatgtcaaggtatgtacttaccgagtgctttcgctgactcttaggagttacaatctgaaatttccatgcaagaactgttattgtttagtacaaatcatcataagcattaatcaaagttctgcacatttcgcttgtaataaacaagtactgaagcaaaaaggatgaaaagaatcagtcttctgtgtcatagttagcaggaagctcatagttgtttattctcttatcttaagataattcaaagaaaagctaaaaatgtatttcaattatctaacctcaatctacttgtaaatattaacttaggttcttgttgaaaaatgatgggctgttcgttgggagttcttcagccatgaattgtgttggtgctgtaagagttgctcaagatttaggtccaggacatacaattgtgacaattctctgtgacagtgggatgaggcatctaagtaagttcttcaatgaccaatatttggctaaccatggcctgacaccaacagctaccggtctggaatttcttgattgatgagaaaatttcatggggaatatacagtctcagcaagtttttcatgatgtgatgtctgccctgatagctggtgaatactgacgagctggaacatagcagatctcatccagcaagagaactgcttgcatctctggattggtacaaaaattttgtcgtacggctttaagttatcctcaaaatacattgtgatgtattttaattagctggcattgccattgataggggctggtatagccaaacctgcatttcttgtagttttggcatatttcattaggatgtattcagtaaactgtaaaaggatgtttttttcccactgaatcttatattagtgttttttggctaagagactgggaatttgttcgggagatcatttattcttttg</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0215800, RefSeq:Os03g0215800