Os03g0233500

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Revision as of 12:28, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os03g0233500| Description = UBA-like domain containing protein| Version = NM_001056009.1 GI:115451746 GeneID:4332164| Length = 4176 bp| Definit...")
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Gene Name

Os03g0233500

Description

UBA-like domain containing protein

Version

NM_001056009.1 GI:115451746 GeneID:4332164

Length

4176 bp

Definition

Oryza sativa Japonica Group Os03g0233500, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:7124009..7128184

Sequence Coding Region

7124266..7124439,7124533..7124565,7124697..7124973,7125584..7126064,7126776..7127324
,7127389..7127570,7127657..7127799

Expression

GEO Profiles:Os03g0233500

Genome Context

<gbrowseImage1> name=NC_008396:7124009..7128184 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:7124009..7128184 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggtgaccgacgccgaggaggtctccccgacggcgtcctcgtcggaattggagcaggaggacgatgacgatgactgctacctgagcgatcaggaggacgacgccttggaggagtccgtcctccaggtgctggaggacgaacgcgacgaggattgccattggtcctccacctccgtgatcaccaaggaatccctcttggcggcgcagagggaggatcttaggaaggtgatggagttgctagggttgagagagcaccacgcgcggacgctgctcatccactacaggtgggatgtcgaaaggattttcgagctgcttgatcagaaggggagggacaggctcttctcggaggctggtatccctctccaacctgctaataatcccggctcgccctcctcaacggaggtaacctgcaatgtttgctatgacgatgtgcccctctcggacgcctccaagatggactgcggccacaactactgcaatgaatgctggacaggatatttcattgtgaagataaatgagggacaaagccgccgtatcaagtgcatggctctgaagtgcaatactatctgtgacgaagcaatagttcgtaagctagtaaatgcaaagcggccagatattgcagagcgctttgaaaggttcttgttggaatcttatattgaggacaatgatacagtcaagtggtgcccaagcacaccgcattgtggaaatgctatacgcgtcaaaggtgatattcactgtgaggtggaatgtacatgtggacgccagttttgttttaattgctcctcagaagcacattcaccatgttcctgtgtgatgtgggagctctggatcaagaaatgccgtgacgagtcagagaccgtgaattggataacagtaaatactaagccctgtcccaagtgccacaaacctgttgagaagaacggtggctgcaatctggttgcatgtatatgtgggcaagcattctgctggttatgcggtggtgctactggcagagatcacacatggtcaagtattagtggccacagttgtggtcgattcactgaagatcagtcaaagaagacagagcaagctaggagaaacctttatcggtacatgcactaccacaacagatacaaagctcacactgattctcttaagcaggaagcaaagcttaagggcgacatccaggggaagatttccatttctgaaaacaaggattccaagataaaagattactcttgggtgataaatggattaaacagacttttcaggtcaaggcgggttctttcatattcttatccttttgcattctacatgtttggtgatgagattttcaaggatgagatgacttctgatgaaagagaactaaagcaaaacctatttgaggaccaacaacaacaattagaattcaacgttgaaagactatctggtttccttgagagggattttcaaaattttagtgatgatgaggttatggatacaatgaagcatgtcatcaatctttccaatgtggttgatagactctgcaagcaaatgtatcagtgcattgagaatgatttgttgtatccactgcgtacgcctcataatattgctccatacaaatccaagggccttgacagggcctcagagctcaatgtttgttgggattcttctgaacaaggtttgcaaccaattaaatacagtcaagatgaacacaagagtcagcctggtttatctggttcatctatttttggaaagcggcaacttggctcaagttctaataacaatgggcggcctcacaagcgagaaagaaatgatgcccatggtggggctgccctttttgacctcaatgtgccagctgaagtggcagacaagatatga</cdnaseq>

Protein Sequence

<aaseq>MVTDAEEVSPTASSSELEQEDDDDDCYLSDQEDDALEESVLQVL EDERDEDCHWSSTSVITKESLLAAQREDLRKVMELLGLREHHARTLLIHYRWDVERIF ELLDQKGRDRLFSEAGIPLQPANNPGSPSSTEVTCNVCYDDVPLSDASKMDCGHNYCN ECWTGYFIVKINEGQSRRIKCMALKCNTICDEAIVRKLVNAKRPDIAERFERFLLESY IEDNDTVKWCPSTPHCGNAIRVKGDIHCEVECTCGRQFCFNCSSEAHSPCSCVMWELW IKKCRDESETVNWITVNTKPCPKCHKPVEKNGGCNLVACICGQAFCWLCGGATGRDHT WSSISGHSCGRFTEDQSKKTEQARRNLYRYMHYHNRYKAHTDSLKQEAKLKGDIQGKI SISENKDSKIKDYSWVINGLNRLFRSRRVLSYSYPFAFYMFGDEIFKDEMTSDERELK QNLFEDQQQQLEFNVERLSGFLERDFQNFSDDEVMDTMKHVINLSNVVDRLCKQMYQC IENDLLYPLRTPHNIAPYKSKGLDRASELNVCWDSSEQGLQPIKYSQDEHKSQPGLSG SSIFGKRQLGSSSNNNGRPHKRERNDAHGGAALFDLNVPAEVADKI</aaseq>

Gene Sequence

<dnaseqindica>258..431#525..557#689..965#1576..2056#2768..3316#3381..3562#3649..3791#aaaccagtccctctttccggccgcaccaccaccgcctcccctccgtttcccctccctcacttccccttccgcgactgcgagcttctccgccgccgccgccgcccccaatcgcccgccgccccgcgccgcgattgcccctcccggtgcccctcccgcaggcgccgccgattcccccgacccggggaagccccggtttgccgcgagctgcgtcgccggtgggggtttgatttggggctgatccgatcgcccccccctagatggtgaccgacgccgaggaggtctccccgacggcgtcctcgtcggaattggagcaggaggacgatgacgatgactgctacctgagcgatcaggaggacgacgccttggaggagtccgtcctccaggtgctggaggacgaacgcgacgaggattgccattggtcctccacctccgtatgcccccccactatccatcgttttatcctcgtcgtatttgttgtccgagtcccaatcgcttcggttgttgatgggttccttcgattgcaggtgatcaccaaggaatccctcttggcggcgcaggtgattccgcgactagagaggatctcttcgcattcgatttccggggggtggacgcgattttcctgagattgaagccttttccctttccttgccttggtaaaattttgtttggtttgtttgggattttgcagagggaggatcttaggaaggtgatggagttgctagggttgagagagcaccacgcgcggacgctgctcatccactacaggtgggatgtcgaaaggattttcgagctgcttgatcagaaggggagggacaggctcttctcggaggctggtatccctctccaacctgctaataatcccggctcgccctcctcaacggaggtaacctgcaatgtttgctatgacgatgtgcccctctcggacgcctccaagatggactgcggccacaactactgcaatgaatgtaagcaacaaccgtttggggaaaaggaaatactatgaagttttcacctttgcgtatgtgctagttatttgcttggatatgctggtagattgatcatgtaaatgcaaatgcactttccgtagcaaagccattgggtcaatgccccaccttttgacctcaatgctaaacaacagtctgaaattcatccactagtagttactaatctgttaggtatgtggaagttgtcgtattggctaacgtcttactaccctcatgctacaaaggaaatgatgtgacataacagcttcttttagcaagcaccttttgtctactaaatgcatgaaactaaactatgggaatggtgtgttctttattttctgggataggatggtgccttatcactttataattgtatgaatagtcatttatgcttataaaactatcacatgcttcaacttatccttagtctttgcacctatcttaattctatgtcgactaactgtcttgacctcagtttataggtgttgccatagaagagtatatgacattttgtggattaatccttttgctgtatgatgatttatttcctgggtagctagctactaatttgtgtattcctgcccccttccaggctggacaggatatttcattgtgaagataaatgagggacaaagccgccgtatcaagtgcatggctctgaagtgcaatactatctgtgacgaagcaatagttcgtaagctagtaaatgcaaagcggccagatattgcagagcgctttgaaaggttcttgttggaatcttatattgaggacaatgatacagtcaagtggtgcccaagcacaccgcattgtggaaatgctatacgcgtcaaaggtgatattcactgtgaggtggaatgtacatgtggacgccagttttgttttaattgctcctcagaagcacattcaccatgttcctgtgtgatgtgggagctctggatcaagaaatgccgtgacgagtcagagaccgtgaattggataacagtaaatactaagccctgtcccaagtgccacaaacctgttgagaagaacggtggctgcaatctggttgcatgtatatgtgggcaagcattctggtaatggttattatgctgcttcaacttctacatttttgcatgtttactggttcccatttgctggtagataatgatatactactattagcatatatccatgcctttttctagtagatatatatttgttcatacaaacaaactcaaagcatttcaaccttttttttcttaaacttcctgctttgagtaagcttcagtgtaccatccaacatgatttttttcattaatgaactcacaggttccaccacctggctagctgataagttgaatgcattcctgaactagagagcttattcaatatgatactttcttcagtattgcaatatgatatggttgacaggctaatggtagtttctgaaattctatgacttaaacagtttaaccttgattatatgggatggttgatgtttttgtataagcttgaacctatttaggcagttcactcacttgattacttgaactggtgttacattgacatctctctagtagcttcttctccttcagtaacacaagtcatcacaccaagagcttgtaaaattcaaactattttaacgtgtttgcaacttgcatcagtgaaggacatggtgttagatgattgtcaaaacccaaaacaacaattttgaagtatcatgtggtgaatgtgttttgacagaaatttcattttcactgaaaatttagtttaaatttattctgatttgatgcttttgaatgtagctggttatgcggtggtgctactggcagagatcacacatggtcaagtattagtggccacagttgtggtcgattcactgaagatcagtcaaagaagacagagcaagctaggagaaacctttatcggtacatgcactaccacaacagatacaaagctcacactgattctcttaagcaggaagcaaagcttaagggcgacatccaggggaagatttccatttctgaaaacaaggattccaagataaaagattactcttgggtgataaatggattaaacagacttttcaggtcaaggcgggttctttcatattcttatccttttgcattctacatgtttggtgatgagattttcaaggatgagatgacttctgatgaaagagaactaaagcaaaacctatttgaggaccaacaacaacaattagaattcaacgttgaaagactatctggtttccttgagagggattttcaaaattttagtgatgatgaggttatggatacaatgaagcatgtcatcaatctttccaatgtggttgatagactctgcaagcaaatgtaagagctcaacaaaagtttggtagtgtctgtaaattactgttctaactatattaccttgcaggtatcagtgcattgagaatgatttgttgtatccactgcgtacgcctcataatattgctccatacaaatccaagggccttgacagggcctcagagctcaatgtttgttgggattcttctgaacaaggtttgcaaccaattaaatacagtcaagatgaacacaagagtcagcctggtttatctggtacttatattgacacctttcatttctattgcagcttcaatttatatgtttctgatagctgatgcatatttcaacatgccctgtaggttcatctatttttggaaagcggcaacttggctcaagttctaataacaatgggcggcctcacaagcgagaaagaaatgatgcccatggtggggctgccctttttgacctcaatgtgccagctgaagtggcagacaagatatgaaacttaaataacttacagcacattccgttgcaagtgtacagctgacccgggcttcttcagctacataaaggaaaactctgctcttttttgttgcgttagagtgtcgacatggcaagtttaaacggggggctataataccaacaatagggtagcgttcacttattctcttgtaaatcatgacaagaattggtggcaatgtgcaatgtgcacgttgcatagctcttataatgctaaatctacccctcgggcaagacgatggcattttggaagataaaattttgaaatgtccttttgcaaacatgcaaggtaatgtatgaagcatattggaagtgcctgcggatgcgtagcacctggaaattaatagaaacaaactaattgagtcgcg</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0233500, RefSeq:Os03g0233500