Os03g0278500

From RiceWiki
Revision as of 12:32, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os03g0278500| Description = Polyadenylate binding protein, human types 1, 2, 3, 4 family protein| Version = NM_001056262.1 GI:115452252 GeneID:43...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os03g0278500

Description

Polyadenylate binding protein, human types 1, 2, 3, 4 family protein

Version

NM_001056262.1 GI:115452252 GeneID:4332428

Length

4229 bp

Definition

Oryza sativa Japonica Group Os03g0278500, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:9511830..9516058

Sequence Coding Region

9511972..9512245,9513242..9513360,9513443..9513636,9513731..9513987,9514101..9514207
,9514272..9514461,9514552..9514838,9514916..9515047,9515333..9515512
,9515619..9515822

Expression

GEO Profiles:Os03g0278500

Genome Context

<gbrowseImage1> name=NC_008396:9511830..9516058 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:9511830..9516058 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggccgcgcaggagatggaggttatgatggttgcgatggcggcggaggcgccggtggctgtggaggtggaggcggttccggcggtggcgggggggctaaacgcgacggtgcccgcgttgtacgtgggcgatctccacgaaagcgtgcgggaggagcacctgctcgaggtgttcggcaagattggcaccctcacgtccgtgcgcgtctgccgcgacaatgccacgagcaactccctcagatatggatacgtgaattacctctcccaggctgacgctgcaattgctttggagaaactaaatcatagtcttattttggataagccgatcagagtaatgtggtctaaccgagatccagatgctaggagaagtggggttggaaatgtgtttgttaagaatcttaatgatttagttgacaatgtaagtctacaagaattattttgcaagtttggagatatattatcttgtaaagtcgctaaaaatgaggatgggacaagtagaggctatggatttgttcaatttgcgttgcaagaatcagcagatgcatcaattcaaaatcttaacaactctcatttttgtggcaggcaattgcatgttgctacatttattaagaagagtgaacgatctacaaacaatgatgacaaatatactaacctatacatgaagaaccttgatgatgatataacagaggaacttattaagttaaagttctctcagtatggtttagtaattagtgtaaagataatgaaaagagatgatgggacatctaagggctttgggtttgtaagttttcaaaacccagaaagtgccaaaagagcaaaagaatccatgaacgggatgctacttggatcaaaaaccttgtatgtagcaagagctcaaaagaaagctgaaaggaaacaatatttgcaacgcttacacgaggagaagagaaatgaaataatcaccaagagcaatgggtcgaatgtctatataaaaaatattaatgatgaagttggcgacgatgctctccgtgaacggttcaatgaatttggaaacattacatcagcaaagattatgcgtgatgaaaagggtattagcaaaggatttggatttgtatgttacaacacacctgaggaagcaaaatgtgctgtaagcaacatgcgtggtgtaatgttttatggcaaaccattgtacgttgctattgctcaaaggaaagaggaaagacgagccaaactagagcaacgttttgctgagcttgcaacgatggttggagctacaagtcctgtcatacccacaggatatcctcaattttactttgcccaccctagtacacatctccctcaaagtccagggagacaaggatttatgtatccacccatagggattagtcaagaatggaggcataacatgtttccctcgtcacataatatccaacaaatacattcaccgattatgcgaaatactccacggcaatacagaaacaacaggggaaggatgaatggaaatatgatgcattttcaccacactgtgaactatgttccacatgcgcagccagctaaagaattcatgtccatgtcccgacagcgatttagccatgctaagtatattccaaatgacatcatggccaatggattggctattcatcatggtgactctatttcatcgatgaatgacgcttttaacaacctgctagctactgctccacccgaggaacagaagaacatgcttgggaatagactatatccgttggttgagagacatcatcctgaccttgccagtaaaatcactggaatgttacttgagctaggtaattctgaagtggtcatgctactttactcatcaaacatgttgtctgccaaaatagaggagtgtgtcaaactgctccaagaggtaaaacccaaacctgaagatcaagaggccctgcaccctggtttcctcctagactctgctggtgtaaacgccaactaa</cdnaseq>

Protein Sequence

<aaseq>MAAQEMEVMMVAMAAEAPVAVEVEAVPAVAGGLNATVPALYVGD LHESVREEHLLEVFGKIGTLTSVRVCRDNATSNSLRYGYVNYLSQADAAIALEKLNHS LILDKPIRVMWSNRDPDARRSGVGNVFVKNLNDLVDNVSLQELFCKFGDILSCKVAKN EDGTSRGYGFVQFALQESADASIQNLNNSHFCGRQLHVATFIKKSERSTNNDDKYTNL YMKNLDDDITEELIKLKFSQYGLVISVKIMKRDDGTSKGFGFVSFQNPESAKRAKESM NGMLLGSKTLYVARAQKKAERKQYLQRLHEEKRNEIITKSNGSNVYIKNINDEVGDDA LRERFNEFGNITSAKIMRDEKGISKGFGFVCYNTPEEAKCAVSNMRGVMFYGKPLYVA IAQRKEERRAKLEQRFAELATMVGATSPVIPTGYPQFYFAHPSTHLPQSPGRQGFMYP PIGISQEWRHNMFPSSHNIQQIHSPIMRNTPRQYRNNRGRMNGNMMHFHHTVNYVPHA QPAKEFMSMSRQRFSHAKYIPNDIMANGLAIHHGDSISSMNDAFNNLLATAPPEEQKN MLGNRLYPLVERHHPDLASKITGMLLELGNSEVVMLLYSSNMLSAKIEECVKLLQEVK PKPEDQEALHPGFLLDSAGVNAN</aaseq>

Gene Sequence

<dnaseqindica>143..416#1413..1531#1614..1807#1902..2158#2272..2378#2443..2632#2723..3009#3087..3218#3504..3683#3790..3993#cctcgcctgcagtgtctcgtgtcccagaacgcgattgcgttttttttttgcacgtttggtttccatatccctcgtctcttgtactcccttacccacatttggcctagccggaggcggtagccagggcccagggctgcttcttatggccgcgcaggagatggaggttatgatggttgcgatggcggcggaggcgccggtggctgtggaggtggaggcggttccggcggtggcgggggggctaaacgcgacggtgcccgcgttgtacgtgggcgatctccacgaaagcgtgcgggaggagcacctgctcgaggtgttcggcaagattggcaccctcacgtccgtgcgcgtctgccgcgacaatgccacgagcaactccctcagatatggatacgtgaattacctctcccaggctgacggtatacaaaaaacctgtgcatgatctgtgtcttattaatttatctcatgtgctattagcattattttgatcgggttaagtgcataattgagttttgcatagaggtggtctcagtactcgtgcaaatcaaaacacttggtatatttacaaatctgcatgacattttgtatgaacaatgtgtcactgaacaagttaaataacccagatcatcgcacttattttattgacagtgtgggggttgatgcatgcatgctatcatattaaccgttatactattatccatagaagtagttggatgtattttaggatgtatagcttgtgttccgctagctgctgccacatgatagaattcttagttttaagaatgtgtgcgggcatcgcttgttcctttctttcaactaaaaaggtgcgaaaatctgatcatatgcccttcgcctagattaaaagtatttacccttttggcccacatgcaagccaatctcccaaaacaatgtgttgttcactaattatgttaaacaaagaagttacagaggaattgaagttgatgtggtcatgtcaaataaggtttagtacaatgtatcctgtatcaacatgatgaggtcgattatattgtttaacatatatcttcttgttacatttgtcactttgatttttaagagttgtatttgtaatgagatgtataatgatttatcttattcttgaaaaataactctttatttttttaatctacttttattagtttgtatgcaagtcattaaattgaccatcgctatcttgttgtgactttttattttgtaacatttgcttatattttgtattattgatttattttgtattgaaatcctagaagcaacttatccaaccatgtgtgcctttcaattcatgccatgttttatactaatgatttagcacttactttaatgttcttgttatctaaccaacttttcttgctaatggatattgataaaattctcattactttttaaacatttgatagctgcaattgctttggagaaactaaatcatagtcttattttggataagccgatcagagtaatgtggtctaaccgagatccagatgctaggagaagtggggttggaaatgtgtttgttaaggtaaaaaaacaaattcctcactatatactttcttggtgtatattgccatatttaactgctactttactatggcattttgcagaatcttaatgatttagttgacaatgtaagtctacaagaattattttgcaagtttggagatatattatcttgtaaagtcgctaaaaatgaggatgggacaagtagaggctatggatttgttcaatttgcgttgcaagaatcagcagatgcatcaattcaaaatcttaacaactctcatttttgtggcaggcaattgtatgtttacttctttattattactcgtctttgttatttgtttattctttgtccggtcatagtttggtttacaattatgatcatatttatgcaggcatgttgctacatttattaagaagagtgaacgatctacaaacaatgatgacaaatatactaacctatacatgaagaaccttgatgatgatataacagaggaacttattaagttaaagttctctcagtatggtttagtaattagtgtaaagataatgaaaagagatgatgggacatctaagggctttgggtttgtaagttttcaaaacccagaaagtgccaaaagagcaaaagaatccatgaacgggatgctacttggtaatagtccacttatgatattaaaataattaaatagtgaaaattcattaagtagtgaaaccttattattctattcaatttgatatacaattgtttgtgaattgttttattaggatcaaaaaccttgtatgtagcaagagctcaaaagaaagctgaaaggaaacaatatttgcaacgcttacacgaggagaagagaaatgaaataatcaccaagagcaatgtaagttccatttgccctctacaatctgtttttttcatctaaaaatgcatctctctttttttaggggtcgaatgtctatataaaaaatattaatgatgaagttggcgacgatgctctccgtgaacggttcaatgaatttggaaacattacatcagcaaagattatgcgtgatgaaaagggtattagcaaaggatttggatttgtatgttacaacacacctgaggaagcaaaatgtgctgtaagcaacatgcgtggtaaatatcctatgtcatttcccattaacgcatgaataagtgtgtacttgcctcatatgtcaacaaattttgtttgctcggattaatcaggtgtaatgttttatggcaaaccattgtacgttgctattgctcaaaggaaagaggaaagacgagccaaactagagcaacgttttgctgagcttgcaacgatggttggagctacaagtcctgtcatacccacaggatatcctcaattttactttgcccaccctagtacacatctccctcaaagtccagggagacaaggatttatgtatccacccatagggattagtcaagaatggaggcataacatgtttccctcgtcacataatatccaacaaatacattcaccgattgtatgtccttgtcctgcttagctcaaattacatgttttcaagtgaacttctattaaaatcttattctttctttgtagatgcgaaatactccacggcaatacagaaacaacaggggaaggatgaatggaaatatgatgcattttcaccacactgtgaactatgttccacatgcgcagccagctaaagaattcatgtccatgtcccgacaggtatactcggtctacttcatgtcttcatcatgttggtttttagtgtttttgcaacagtgctctatttcaattagtttcaaacttccatagtttttttttcaacaacattagtctctactattgtaagcaaaagcttttatgcttaattgtaagtttagtattattagattatcatactcactagatgttgttatgtgacatgtcactatgaactaagttgttcattggactttgtagcattttgttacgaagagtttaacatgctatccttttgaatttacgcagcgatttagccatgctaagtatattccaaatgacatcatggccaatggattggctattcatcatggtgactctatttcatcgatgaatgacgcttttaacaacctgctagctactgctccacccgaggaacagaagaacatgcttgggaatagactatatccgttggttgagagacatcatgtaaaatattttgcgcatatgttacattgacataccttttcacttatatttggaatattaaagggacatacttttatattaatatgacacgccttgttttttgcagcctgaccttgccagtaaaatcactggaatgttacttgagctaggtaattctgaagtggtcatgctactttactcatcaaacatgttgtctgccaaaatagaggagtgtgtcaaactgctccaagaggtaaaacccaaacctgaagatcaagaggccctgcaccctggtttcctcctagactctgctggtgtaaacgccaactaagaattcaatgccaatccaagcttttgaccgtgctaaatatattatgtatttgtgttttagagatgctaattagatagatgctctttatttcatagtttatggaactatattattgggcttgttatagaacttactaataatgcctaggatttaggtagaaatctcgggagtttttcttaaacggagcttgttacgaatcttagataataaattatatatgatggtgttcttgtgtt</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0278500, RefSeq:Os03g0278500