Os03g0284500

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Revision as of 12:33, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os03g0284500| Description = HAD-superfamily subfamily IIA hydrolase, CECR5 protein| Version = NM_001056297.1 GI:115452322 GeneID:4332467| Length...")
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Gene Name

Os03g0284500

Description

HAD-superfamily subfamily IIA hydrolase, CECR5 protein

Version

NM_001056297.1 GI:115452322 GeneID:4332467

Length

5036 bp

Definition

Oryza sativa Japonica Group Os03g0284500, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:9834449..9839484

Sequence Coding Region

9834838..9834897,9835535..9835618,9835941..9836142,9836220..9836287,9836556..9836651
,9836864..9837065,9837147..9837218,9837343..9837383,9837573..9837646
,9838548..9838583,9839043..9839277

Expression

GEO Profiles:Os03g0284500

Genome Context

<gbrowseImage1> name=NC_008396:9834449..9839484 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:9834449..9839484 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgaagggcttccgcgcggcgctggcccgcgcgtcggcgaggtcgcgggcggagctgcaggtagcgcggcggcggcgccacccgtcggatcccgcccgccgcctgtcccactccgggacggcgccggcgaggccgtcgttcggcatcgccttcgacatcgacggtgtcatcctgcgtggccgcagccctatcggaggctcgccgcaggctatccgccggctctactccgaagatggtaccctgaagattccgtttctgtttttaacaaatggtggtggtgttccggagcacaaaagagcacaagagctaagtgagcttttaggagttaatatctctccagcacaggttgtgcatggttcttctccttataaagagctggtgaaccgctttgaaaatgaccttattatcgctgttggaaaaggagagcctgcagcagtgatggttgactatggatttagaaaagttctatctatagatgagtattcatcatattttggagacattgaccccttagctcctttcaagaaatggatagtgcaacaaccagacaatataaacttgatgtcagaaaaagtgcacccatcatatgatgtttttgaagagagagttaaaggagtttttgttgtaagtgaccctgtcgattggggaagagacctacaggtactttgtgacatcttatcaactggtggacttcctggaagtggaagaggagatcaaccacctttgtattttgcatctgatgatcttgaatatcaggcagcatttccttctgaacgtcttggaatgggtgctttcaggatagcactggaaagcatcttcaatcaagttaatgatcatcggctgaagtacatatcatatgggaagcctaacccatttgtgttcaagaatgcggcaaacatacttgaaaaacttgctatttgcatgcatccaagttcactgccaacaaaagaagtagaagaacatcggttctctactatctacatggttggggataatcctaaagttgatataaatggagctttgaaggctggacccccttggtcacctgttcttacaaggactggcgtatttaggggaaaggataatgatccacagtatcctgctgatttggttgttgatactgttgaggatgccattaactgtattttggaaaaggaatgtatacagtga</cdnaseq>

Protein Sequence

<aaseq>MKGFRAALARASARSRAELQVARRRRHPSDPARRLSHSGTAPAR PSFGIAFDIDGVILRGRSPIGGSPQAIRRLYSEDGTLKIPFLFLTNGGGVPEHKRAQE LSELLGVNISPAQVVHGSSPYKELVNRFENDLIIAVGKGEPAAVMVDYGFRKVLSIDE YSSYFGDIDPLAPFKKWIVQQPDNINLMSEKVHPSYDVFEERVKGVFVVSDPVDWGRD LQVLCDILSTGGLPGSGRGDQPPLYFASDDLEYQAAFPSERLGMGAFRIALESIFNQV NDHRLKYISYGKPNPFVFKNAANILEKLAICMHPSSLPTKEVEEHRFSTIYMVGDNPK VDINGALKAGPPWSPVLTRTGVFRGKDNDPQYPADLVVDTVEDAINCILEKECIQ</aaseq>

Gene Sequence

<dnaseqindica>4588..4647#3867..3950#3343..3544#3198..3265#2834..2929#2420..2621#2267..2338#2102..2142#1839..1912#902..937#208..442#gcgggttccccccgcgcgaggggcgtggcccacatgtcagtgagggtggaagcgatagtctagaactcgccccgcacgcgcactcgtggacacctcgtcgccgctgggaagcggaggcggcggcggagttggcttggacttgggcctcgcgttcgccggaggcgaaggggagagagcagtggagtagagaggagaggaggcggcggaatgaagggcttccgcgcggcgctggcccgcgcgtcggcgaggtcgcgggcggagctgcaggtagcgcggcggcggcgccacccgtcggatcccgcccgccgcctgtcccactccgggacggcgccggcgaggccgtcgttcggcatcgccttcgacatcgacggtgtcatcctgcgtggccgcagccctatcggaggctcgccgcaggctatccgccggctctactccgaagatggtaaatctcactcttcccaaactatactgcattttatgaagcagcttgtaggcatcagaactcaggattgagcgtttcgttgtacttgtattgctgagttttaggacatgattacagaattcgtgtctttggggaatattgtcgagcaagtcgaaggcactaagcatcagccttgttttgtgcattgctctcacagattatgtcatatctgatgcttagagctgtagaccatgcaagtttttactatacaaggcattatttttcctttttcttaagagcgttcaatcgtgggtcatttttatttattatataagagttgttccgctgatgcaaccaatgtgtcgtatttgaatcaaatgacccataatggatattcgtgctgtaaaaaacgttactcagttgggtctatagcatctggtgtttaaagcttacatatcaccattcattcctctttttcaggtaccctgaagattccgtttctgtttttaacaaatggtaagtaatttattacttcctccgtttcacaatgtaaatcattctagcatttcccacattcatattgatattaatgaatctagacatatatatatatatgtctagattcattaatatcaatatgatatgtctagattcattaatatcaatatgaatgtgggaaatgctagaatgacttacattgtgaaacggagggagtatgtctgatgaacatcatgttttttctgtgatgatcttatattaatttcgacatagtgataggttgaacccattattttagaccaatagtcaggtactcaggcagtaggcttgtttccctattgtgctcaggatcttttcttaaataatgtatgtgccttattttcttagggcacccacaatggttatctataagctatctacaagagatccatgtcagcatattttcctacttggaagatattaaatgaagagagagagcaaagctatctactagcttagagatagtctatagagaaaaacgaggcaatgcatgagagagctatagatacctatgtagacatactattgaggtggtttactattaatctagtctattgctgagatgtacatgttttatagagagcaccctactttaccattgcgggtgctcttactgtaatggaagcaaaattagttgtgttcagtatgttgcactgatcaacatatattattgttttatactatgtggttaccttggcttgcatgaagaccttgttagcaattggactgcagtgccagagcgaatgatttaatggtttaaaatgttaaatgcttggaaatatctgaaatctatttgaactgctagttttccacatcagttacatggtcactacaactaagggtttgtacagcatggcaatctgatgctcccacttttcaggtggtggtgttccggagcacaaaagagcacaagagctaagtgagcttttaggagttaatatctctccagcacaggtaattctataatccttttgactcattatttggcacaatcaagcatggcagcggaccttcaactgataactaatataaaaattataaaatcatgcaattccattttttaatatgatagagataagtccacacagcctgtaaatgtgttaattttctatctgtgcaaactgaaaatttgtgatggtgcaggttgtgcatggttcttctccttataaagagctggtgaaccggtatattaccattaaagtatatattagccttaaaagttctatctgtagactgtctctgtaactctgtttttgaaatgaacatgccagaacctgaatggaaccacaccttttcatgttactgcagctttgaaaatgaccttattatcgctgttggaaaaggagagcctgcagcagtgatggttgactatggatttaggtaatctttgatgtttctgttatggctgcaggtcaaatatattgtgtatattttaaaagactcgttctcttttacttgcagaaaagttctatctatagatgagtattcatcatattttggagacattgaccccttagctcctttcaagaaatggatagtgcaacaaccagacaatataaacttgatgtcagaaaaagtgcacccatcatatgatgtttttgaagagagagttaaaggagtttttgttgtaagtgaccctgtcgattggggaagagacctacaggtaaccctctccatgttccgttgtttcaaaagaaatcttcttgtgccactatttttaactttgtataaaatagtaaatgcatgagttataaacaccctcttttataaacattctgtgagcaagcatatcatgcatatggttttcctttagttgaagtgtctggcatacatgagttcagtaagtcaagatttttttttatcttaatctgaaaggtactttgtgacatcttatcaactggtggacttcctggaagtggaagaggagatcaaccacctttgtattttgcatctgatgatcttgaatatcaggtaatataatgcaccaagaatgaatcgattatatgaacttgttgcagacagacaagttctcttattttgacatactccctccgtcccaaaaaaacttaacctcgtactacaacatgacacattctagtacaacgaatctggacatactaggatgtgtcacgtcctagtactaggtaacctttttttgggatggagggagtacagttttagtgcatacatgtataagataaccattagtagaatagtaacttatggccacctatggcaggcagcatttccttctgaacgtcttggaatgggtgctttcaggatagcactggaaagcatcttcaatcagtaagtttttatacattggacttgtaggcatatatatgttgaatatttattcatgttctgccaacttaaatttccagagttaatgatcatcggctgaagtacatatcatatgggaagcctaacccatttgtgttcaagaatgcggcaaacatacttgaaaaacttgctatttgcatgcatccaagttcactgccaacaaaagaagtagaagaacatcggttctctactatctacatggttggggataatcctaaagttgatataaatggagctttgaaggttagcctatgatagaaccgattgtttttctttctaagaaaatcgctgcatacaacagttgatgggtgatgcaattgtgtagttttgggcatggccttcaatgattttttctaatacgtgtatatatttatgaaattgaatgattagcatgaatccgacaaattaatatatcatgtaatataccttgttaaataactgccatccactttggtcctttgcttttgtgtagttctaagttctaacaacttaaacaatcgtaagcgatgaaactgtagcttctttcctcctggaaaagtttctgacattgagtgacattttgcaggctggacccccttggtcacctgttcttacaaggactggcgtatttaggggaaaggataatgatccacagtatcctgctgatttggtatgttatgtcttattagtgatttaccgtataaatgttaactgtcaagccatctgatacatgacaacacgtctgtcaagaacatggatgtataaagtgattatagtatcagattagatctgaaaaaccataggaatttgctcatcttactctggaactcaattcttttgcagttttaccttacttttacctactttggcacaatctataggagattaggagtggttactttagttctcaagggggttgggtatcgtatatcttttttgttcgagtgatgcactgatgcttgattattatcttgctagccctatcaaatcacaatttttttcttcattaaacatgatgttcgtaccaatccatacattgttctcatgcttgcaaagaaataattgttttgttaatctaatacatgcgcttttgtgggtgttttgtgggtcttgaactgtagtcccggcacatccttgttaccgattggctgtcatctaccaaaagcttcttctgctgtctgccgatgcagttttaaactgcttgcagttttattaatcagaaacattgacaatccattgttgtggcctcatgccattatgtttattagtctgcatgctgttttatttacacttgctatgtcatgcaggttgttgatactgttgaggatgccattaactgtattttggaaaaggaatgtatacagtgacagagtgacacttgttctgagtatccatgctcccttcattgttatttggcatgcattttgtgccacaccattgttttgtctagcaattctggagcaattgttagccggagttccatctctgattcattccacttgtttaagttgggacatcagaaaatatgctgatgcgctatagtattttttttttcctggctgagagataggccggacattatatatgtagaatcgtcagggtttcagggcagcagagctgcagcagagctaaaagtgaatttcaccctgtaccagacgttcttgtttccctgcatcttatttcttggatttcagtactaccaatgacattattatatgaactatacacttccattatcaaaaccatcatttcatgt</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0284500, RefSeq:Os03g0284500