Os03g0329200

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Revision as of 12:37, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os03g0329200| Description = Zinc finger, CCCH-type domain containing protein| Version = NM_001056538.1 GI:115452804 GeneID:4332723| Length = 318...")
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Gene Name

Os03g0329200

Description

Zinc finger, CCCH-type domain containing protein

Version

NM_001056538.1 GI:115452804 GeneID:4332723

Length

3185 bp

Definition

Oryza sativa Japonica Group Os03g0329200, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:12118811..12121995

Sequence Coding Region

12119140..12120104,12120192..12120368,12120483..12120668,12120820..12120899,12121017..12121283
,12121374..12121485,12121631..12121846,12121950..12121980

Expression

GEO Profiles:Os03g0329200

Genome Context

<gbrowseImage1> name=NC_008396:12118811..12121995 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:12118811..12121995 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggatgcatacgaggcgaccaaggtggtgttctcccggatccaggcgctggaccctgaccacgccgccaagatcatgggcctcctgctcatccaggaccacggcgacaaggagatgatacgcctcgccttcggccccgaggcgctgctccacagcgtcatggcgcaggcgcgcaaggagctcgccctcctgccgccgcctcaggcggcgtcgtcgtcgcccaccgtgccggcagcccactcgccgttcctgctgtcgaggcagaactccggccgctgccccgcgccgtcgccgtcgtcgtgggcgcaggcgcagccgttctcgaggagtaacagcatgggcaatggcggcgccgcggatgagatggtcggcgctggggaggagctaatgagccccttgaacggcgggggaggcgccgcggcgaacgccccgcccttctttcctcggggtggggacgcgctcctggacgacttcgagctgcaggagcagctcgcgttcctgcacgacggagccgggggcgtgaaccccgggcatgctctccaggcgttcgacggagcggagtgccggagccccggccccggcgagagcggcgggatgctcccctacggcctcgcctgggccaacggcggccctgggcaccgccgcagcgcgtcggtgaacgagctctgcctcggcggcgacggcttcgggtggaaaccttgcctgtactacgcgcgcgggttctgcaagaacggcagcacctgcaggttcgtccatggcggcctctccgacgacgccgccatggacgcaaccaccgccgaacagcagcagtgccaggatttcctcctccgctccaagagccagcgcctcggccccgccgccttcccgttcacccccacaggctctctccctgcctcgccatccgccaccagcaagtgcctcagcctcctcctgcagcagcagcagcagcacaacgacaaccaaagagccgccgcggccgcgctgatgctcgccggcggcgacgaggcgcacaagttcatggggcggccgcgcctggaccgcgtcgatttcgccagcatgatgaaccccgggtcgcgccagatttacctcaccttcccggccgacagcacgttccgcgaggaggacgtctccaactacttcagcatctacgggccggtgcacgacgtgcgcatcccgtaccagcagaagcgcatgttcgggttcgtcaccttcgtttacccggagacggtgaagctgatcttggccaagggcaacccgcacttcatctgcgacgcccgcgtgctcgtcaagccctacaaggagaagggcaaggtccccgacaagtacaggaagcagcagcaaggcgatttctgctgcatgtcgcccacggggttagacgccagggacccctttgattttcaccagctcggtgcaaggatgctgcagcactccaacagcgcgaacgagctaatgctgcggcggaagctcgaggagcagcaacaggcggcggagctgcagcaggctattgatctccatagccgccgcctcattggcctccagctgctcgacctcaagtcttctgccgctgtccatgcggcggagacgacaacaatgtctctgcccactccgatcaccaatgccttcacctccggccaacccggtgccaccacaatcgtcgagtcaccgcctagctctactgggcaactgatggcgagctgcggctctccatcggaggggaaagttgtcaatggtggtaataaggcggattctgccggtgaggttacccgcaatgccgatagtgaccaaagtggtgagcacaacttgccagacagcccgtttgcttcctctaccaagtcgaccgcattctttaccgcaaccgctgccactgccattggtagcgagggagatttcaccaccggtagtagctgcaatattggtggcagtgcggtcggcagcgccaaccctctccggcctcccacattggacataccttcgccaaggacctgcttcttccccatgcccaggctgtccgagcacggggcgatcgggatgtaa</cdnaseq>

Protein Sequence

<aaseq>MDAYEATKVVFSRIQALDPDHAAKIMGLLLIQDHGDKEMIRLAF GPEALLHSVMAQARKELALLPPPQAASSSPTVPAAHSPFLLSRQNSGRCPAPSPSSWA QAQPFSRSNSMGNGGAADEMVGAGEELMSPLNGGGGAAANAPPFFPRGGDALLDDFEL QEQLAFLHDGAGGVNPGHALQAFDGAECRSPGPGESGGMLPYGLAWANGGPGHRRSAS VNELCLGGDGFGWKPCLYYARGFCKNGSTCRFVHGGLSDDAAMDATTAEQQQCQDFLL RSKSQRLGPAAFPFTPTGSLPASPSATSKCLSLLLQQQQQHNDNQRAAAAALMLAGGD EAHKFMGRPRLDRVDFASMMNPGSRQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIP YQQKRMFGFVTFVYPETVKLILAKGNPHFICDARVLVKPYKEKGKVPDKYRKQQQGDF CCMSPTGLDARDPFDFHQLGARMLQHSNSANELMLRRKLEEQQQAAELQQAIDLHSRR LIGLQLLDLKSSAAVHAAETTTMSLPTPITNAFTSGQPGATTIVESPPSSTGQLMASC GSPSEGKVVNGGNKADSAGEVTRNADSDQSGEHNLPDSPFASSTKSTAFFTATAATAI GSEGDFTTGSSCNIGGSAVGSANPLRPPTLDIPSPRTCFFPMPRLSEHGAIGM</aaseq>

Gene Sequence

<dnaseqindica>330..1294#1382..1558#1673..1858#2010..2089#2207..2473#2564..2675#2821..3036#3140..3170#ctcaatcctttgggaaatggagctgctcagtggctcagtggccgcagctccgggaagcggaggctaccgagagcaaccggaccacgccaagaagcactagctagtgtactgcctcctcgatcttgctctatctaccactagcatcgagcttgcttcgctagctcctgtatatttaaggccgtaataagtgtaaacacagcaccaatagtccaacacagatactagtagtagtgtggtaaaagggtgaactgaagaccaagaggcaaaggcgcctgtgaggctgtgactgagaaggtaggagtaggagaagagaagctttgggcgccgccatggatgcatacgaggcgaccaaggtggtgttctcccggatccaggcgctggaccctgaccacgccgccaagatcatgggcctcctgctcatccaggaccacggcgacaaggagatgatacgcctcgccttcggccccgaggcgctgctccacagcgtcatggcgcaggcgcgcaaggagctcgccctcctgccgccgcctcaggcggcgtcgtcgtcgcccaccgtgccggcagcccactcgccgttcctgctgtcgaggcagaactccggccgctgccccgcgccgtcgccgtcgtcgtgggcgcaggcgcagccgttctcgaggagtaacagcatgggcaatggcggcgccgcggatgagatggtcggcgctggggaggagctaatgagccccttgaacggcgggggaggcgccgcggcgaacgccccgcccttctttcctcggggtggggacgcgctcctggacgacttcgagctgcaggagcagctcgcgttcctgcacgacggagccgggggcgtgaaccccgggcatgctctccaggcgttcgacggagcggagtgccggagccccggccccggcgagagcggcgggatgctcccctacggcctcgcctgggccaacggcggccctgggcaccgccgcagcgcgtcggtgaacgagctctgcctcggcggcgacggcttcgggtggaaaccttgcctgtactacgcgcgcgggttctgcaagaacggcagcacctgcaggttcgtccatggcggcctctccgacgacgccgccatggacgcaaccaccgccgaacagcagcagtgccaggatttcctcctccgctccaagagccagcgcctcggccccgccgccttcccgttcacccccacaggctctctccctgcctcgccatccgccaccagcaagtgcctcagcctcctcctgcagcagcagcagcagcacaacgacaaccaaaggtactaccgccttcgcaacctccatgcgttctccaagccagaaggcatttcaaagttccaaaacgtttcttgcttgcgcgtgtgaagagccgccgcggccgcgctgatgctcgccggcggcgacgaggcgcacaagttcatggggcggccgcgcctggaccgcgtcgatttcgccagcatgatgaaccccgggtcgcgccagatttacctcaccttcccggccgacagcacgttccgcgaggaggacgtctccaactacttcaggtatataatgcgatgttgcaatgatgcttcttccttctttcatggcgggctcggtaggacgcgatctgattggcatttttgcattgctgttcttggcaacgcgccgcgctgcagcatctacgggccggtgcacgacgtgcgcatcccgtaccagcagaagcgcatgttcgggttcgtcaccttcgtttacccggagacggtgaagctgatcttggccaagggcaacccgcacttcatctgcgacgcccgcgtgctcgtcaagccctacaaggagaagggcaaggtccccgacaagtacaggtacgttcgaaacgcggcttgaatgaagaaatgcatgcgcgattatgttaagcgctccaaattagtagtagtagtatactactacgttgcttgtcacgactgctagccaccaacctgcatgcatgtgaatttgttgttcgtcgctcctcaggaagcagcagcaaggcgatttctgctgcatgtcgcccacggggttagacgccagggacccctttgattttcaccagctcggtataaaaagattcaacctttacctgctcctaccatttggacgccctgtttgcctgatgttcaatgttgcttgctagagctgtaagttttgatggatgttggtttggtgttcgtcaggtgcaaggatgctgcagcactccaacagcgcgaacgagctaatgctgcggcggaagctcgaggagcagcaacaggcggcggagctgcagcaggctattgatctccatagccgccgcctcattggcctccagctgctcgacctcaagtcttctgccgctgtccatgcggcggagacgacaacaatgtctctgcccactccgatcaccaatgccttcacctccggccaacccggtgccaccacaatcgtcgagtcaccgcctagctctagtaagcatagatagcattgatcgaactcgttctttagacgtcaatcaatcaagttctcttaacttgccaatatccactgtacattgtcagctgggcaactgatggcgagctgcggctctccatcggaggggaaagttgtcaatggtggtaataaggcggattctgccggtgaggttacccgcaatgccgatagtgaccaaaggtagatttttaccattattggcattctgcttgctcatgattctcagactaatgtcattaactcatgaacaacaagcctacaaatctgcaattattccgtggctgaaagtttgcttcaccattgtttgtgcatgtattttgagcagtggtgagcacaacttgccagacagcccgtttgcttcctctaccaagtcgaccgcattctttaccgcaaccgctgccactgccattggtagcgagggagatttcaccaccggtagtagctgcaatattggtggcagtgcggtcggcagcgccaaccctctccggcctcccacattggacataccttcgccaaggacctgcttcttccccatgcccaggtttggccatgccactactttgagcagttgattactacttgattgtactggtcatttcgtgatcacttgcgattggaatgattcgatcaaatgcaatgagcaggctgtccgagcacggggcgatcgggatgtaaagtagtccacaatgg</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0329200, RefSeq:Os03g0329200