Os03g0336700

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Revision as of 12:37, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os03g0336700| Description = PAP/25A core domain containing protein| Version = NM_001056579.1 GI:115452886 GeneID:4332766| Length = 7078 bp| Def...")
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Gene Name

Os03g0336700

Description

PAP/25A core domain containing protein

Version

NM_001056579.1 GI:115452886 GeneID:4332766

Length

7078 bp

Definition

Oryza sativa Japonica Group Os03g0336700, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:12544932..12552009

Sequence Coding Region

12545049..12545273,12547269..12547454,12547704..12547796,12547987..12548169,12548281..12548383
,12548470..12548640,12548861..12550029,12550260..12551170,12551653..12551719

Expression

GEO Profiles:Os03g0336700

Genome Context

<gbrowseImage1> name=NC_008396:12544932..12552009 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:12544932..12552009 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgatggcgggcggtgggggtgggggagggggagggacgctggcggcggcgatggcgagggcggcgccgggggcggcggcgatcccggcgggggcggtggcgcgcgcggaggaggcggcgggcgaggtggtgcggcgggtgcggcccacggaggcatccgagcggcgccgcgcggcggtcgtcgggtacgcgcggaggctcgtcggcaccgcgctcggctgcgaggtctttgcatatggatcagttccattgaagacttaccttcctgatggggacgttgatctgactgtactcggcaatacatcttatggtagtactttaattgatgatatctaccacatccttcagtcagaagagcagaattgtgatgctgaatttgaagtaaaggacttgcaactgatcaatgctgaggtcagacttattaaatgcactattgaaaatattgtcgttgacatctcattcaaccaaactggtggaatctgcgcactttgcttccttgagctggttgaccgtaaagttggaaaaaatcatctagtcaagaatagcattatattaatcaaggcatggtgttattatgaaagtcgtctactaggagctcatcatggactgatatcaacttacgcactggaaactcttattctttacatattcaatctattccacaaatctctccatggccctctggaggttttatataggtttctggagtatttcagcaagtttgactgggacaactattgcataagtttaaatggccctgttgcattatcgtctttgccaaatcaaattgtcgaagcaacaaatacacctggcagtgatttgctgtttgacaaagagttcctcaataactcggtgcaaaaaacagattctaatgcatgcaatactgagttccgttcaaaatatctgaacataattgatccactaaaggaacacaacaatcttggcagaagtgtgaacaaagccagctttaatcgtattcggactgctttttcgtatggtgctcagaagcttggtcaagttctcttgttacaaccagaacttattcctgatgaaatttatggatttttcaagaatacattgaataggattggaagtggagtaaggccagacattggagatgaaagctataatgatgcatttcgttgtgagtccttccttggtcctggcaaggcattgtgggatgagatgtcgagcatgaaaatttcctgcaataatcaagatgagaacagaggtcctcaccatctttcaaagtgcttagttaacaatgactcatatgccaccttgaatgtgcctacacattttcatggagatcacatggtagcatcaagtactgatttgagtctaaaatcgtcctgtttcatccaagagacaccaaatcagtatcctttgttttacctagaagatggcaatggtagcagcgaacagtacttggaccatgaaatggtggaacaggcatcttgttgtacagctgaaacctgccatgcgaatgaagaaccatcaatgcatccacaagtttatccaaacaatacgttacatacattttactcaagtttggccaataatttggaatattccaaatctggtcagtcagacatgacaaattcgagtataaatgttgcccatgaggaaaaacaaaaattttctccctccccattgagcttggtggatctatcaggtgatctagatttgcaattgagatgcctccgccaagttcagtatcacctagaatacatgtttgatggttttttgcagtctgttcaagaagcatcttctgactgtaaggttgcaagggactcgtttgaaattccagctgttaacatcacatcgaattctgatgtggtgctgccaggtctgttatcaccttcatctactgaaactgatgagaggagattatctccagtttcctcttctcatagcaccgaagattcttcacagcagtcacatgatgagagcaactggggtgcgtcttgtcagcagaactttttattaataccctctcaaacaattgctccaaccaatggactgtcaccatgttcttcttatgctaattcagataattctgttcaattgtatgatagctcagatgatatctccaatatgcatgaaacagatcaacatattctccaaaagcacatggtatctttaggacagaacaagacactaatcaatcgacaagtgagagttaaaagcaatcaagcatcagttccaaaaggaaaattttccatttgtaaggagcaaataacacaagacactgcaaccaaggacataaagttaagccggcatttgagagtcaaggacagtgagcatgaatatataagcactgctaagaagatttcgagctataattgtgacacttgcttagaatgtgtcaaacctgaaagtgaagcaatgataccaaggcattacaagcatgcccgctcaagcaagaactcatttgagcatcggatttatgatattgacatggggtttgcccgatctggtagttcacggaatcaaatgccaaaatatcaatcactgaagaatcaggatatgtcaagcttaaatgtccaaaaagagcatgaaattaactggcccagaaaacaaatgccatccgagctgttgaagctccaaaacagtctacgtggcagggcttgctcaaacaagaaattagctgcaaaacaaattaacaataatcacaaagaacatctatcttttgtaagggatccagaacagatgccatataatcaggttaactcaaacaaagagtttgagactgttggcaaatccagccaattattgccacgggtacagctctctcttcataacgacagaagccttacagcatctacttgtcagtcctcattccctgtgacaaaaggatctactcaattcaacgacttggagatgccttcactagaaaatattgagtttggaactttggggtctttttcattgacacttgtgtcaccaaaatcgaataagaatcccaacacacactcaaccagtaagacatgtgccgatgctgctgcattggcattgcaaagccatccaacacaaagcaggtcaccaggattctacaaagttggagatgaagatcacttcccacctctccgtgctgggactcgctga</cdnaseq>

Protein Sequence

<aaseq>MMAGGGGGGGGGTLAAAMARAAPGAAAIPAGAVARAEEAAGEVV RRVRPTEASERRRAAVVGYARRLVGTALGCEVFAYGSVPLKTYLPDGDVDLTVLGNTS YGSTLIDDIYHILQSEEQNCDAEFEVKDLQLINAEVRLIKCTIENIVVDISFNQTGGI CALCFLELVDRKVGKNHLVKNSIILIKAWCYYESRLLGAHHGLISTYALETLILYIFN LFHKSLHGPLEVLYRFLEYFSKFDWDNYCISLNGPVALSSLPNQIVEATNTPGSDLLF DKEFLNNSVQKTDSNACNTEFRSKYLNIIDPLKEHNNLGRSVNKASFNRIRTAFSYGA QKLGQVLLLQPELIPDEIYGFFKNTLNRIGSGVRPDIGDESYNDAFRCESFLGPGKAL WDEMSSMKISCNNQDENRGPHHLSKCLVNNDSYATLNVPTHFHGDHMVASSTDLSLKS SCFIQETPNQYPLFYLEDGNGSSEQYLDHEMVEQASCCTAETCHANEEPSMHPQVYPN NTLHTFYSSLANNLEYSKSGQSDMTNSSINVAHEEKQKFSPSPLSLVDLSGDLDLQLR CLRQVQYHLEYMFDGFLQSVQEASSDCKVARDSFEIPAVNITSNSDVVLPGLLSPSST ETDERRLSPVSSSHSTEDSSQQSHDESNWGASCQQNFLLIPSQTIAPTNGLSPCSSYA NSDNSVQLYDSSDDISNMHETDQHILQKHMVSLGQNKTLINRQVRVKSNQASVPKGKF SICKEQITQDTATKDIKLSRHLRVKDSEHEYISTAKKISSYNCDTCLECVKPESEAMI PRHYKHARSSKNSFEHRIYDIDMGFARSGSSRNQMPKYQSLKNQDMSSLNVQKEHEIN WPRKQMPSELLKLQNSLRGRACSNKKLAAKQINNNHKEHLSFVRDPEQMPYNQVNSNK EFETVGKSSQLLPRVQLSLHNDRSLTASTCQSSFPVTKGSTQFNDLEMPSLENIEFGT LGSFSLTLVSPKSNKNPNTHSTSKTCADAAALALQSHPTQSRSPGFYKVGDEDHFPPL RAGTR</aaseq>

Gene Sequence

<dnaseqindica>118..342#2338..2523#2773..2865#3056..3238#3350..3452#3539..3709#3930..5098#5329..6239#6722..6788#ggttttcccccaaacccccccccctctctctctctctctctctctctctctctctctttccatttgctgtgcccggatcccgcatggccaccggcggcggggtctaggaggaggaggatgatggcgggcggtgggggtgggggagggggagggacgctggcggcggcgatggcgagggcggcgccgggggcggcggcgatcccggcgggggcggtggcgcgcgcggaggaggcggcgggcgaggtggtgcggcgggtgcggcccacggaggcatccgagcggcgccgcgcggcggtcgtcgggtacgcgcggaggctcgtcggcaccgcgctcggctgcgaggtgagtgcccgggcggttcgcggcggggcgcgcccttctgcccccgtttccactccaatttcgggtttttgaggtttctcgggattctcatcctcgtttgattggggcgttttattcttcatttttttttgtttagtgtttactctgcttccgtcgctgtctgtgggatttgacgggaattctctccacgggaggattatcctttttaattaatcggcttaggttcgtacggatcaagactgattcctaaactatttgctcgcggcgcgtcgttgcaattctgccttgttttattttcgctgaccttcacgggggaacaaaatcgggatcatttttttatttcacattttttaattactaataataaactactattaactagccctcgtgaatccaaactgctgaattccgaactttagctgaggccaccgtgcgctcggatctatggccttttcgctttttggtttaataaagggttttctttttctgatggaacgtttcttgacgcgttcaagtatttattttctgttggcacaataatgttttatgttcgcttgcaagcatcacttccagttccaacgaaaaggcacgaattgctttataaaatccaactttctacatcctaaaagttcctttcaggcggaaacaactttcttctgctggtccagaagagagacaaaaagaaaaagaaaaaaaaactcctttttcttgttttggttctgtttctgctcgtgatgatcttgactgcctgccaggagaagcagtacccttcacggttcactctgtccatggtgactcatgcatccacgtggatttatccaatagtgtggcaactgatcaatgctgtagctgaatcttctgggcatgttgtgtctgaattgagtattttgacatagcatctgggcatgttatgtctgaattgagtgtttcgacagagcagggggtgacatttagcccatgtacacggacagctgcctgccaacatcctgcattcagttctactgcgtactttgaattattacgagctcacaaattcacagttgtttactgatcggaattcatcggtccactgtttttagtcgtacttgaactttgtccgtgcgctcctttacttatgtgtaatctcttcgctccgtacccacagatggtagatctggaaaagtggtccttatctgttgctattctgctgaacacttttaatgcgtactacgagatgtctatacagtctttgtatagctggaattgcttggaaacgtgtggcaggctatagttgataggcattagttttgcagtaggagtcatgttgtggtgtcacctagcaaatgatattcattgggcatcaaagcagtaatgttttcgcagtaatgttttcgcttaattattgtcacatgtgtgtatgtgtgccaatagtgcgcaacacagaatccctgcaagatgccaattgactttgacttttctccgccttatatgttgtttctagttcttgtttttttttttttaaaaaaatgtcgtatttgctgattggttgcttacctgcttgaaaaatatgattttgtgattcatgatagcagctcacttggtggcatattggtcgctattttctagtcatttcatcattcatacttaagacagttatattatgatttgtttccatggatgtatttagttgttttggcgcatgcaaaactgacatgactaagtatatatgtttcttagtggaataacatgatggtgacccaacaaaaagttcatcttttaattgttctcttggaaaaaccaatggtaacacactcacataccaggaatcttcgtggatatgtgatatatcttggttgtggttctctatcatattactacctgtatatgattgttgcaatgacttcttattctatctagcaatatctgttggaccttttgacgtgccaactttttgtgcaaaaatatttctttattatttcctagttctaaaatgtttcttctttattcgatatgtaggtctttgcatatggatcagttccattgaagacttaccttcctgatggggacgttgatctgactgtactcggcaatacatcttatggtagtactttaattgatgatatctaccacatccttcagtcagaagagcagaattgtgatgctgaatttgaagtaaaggacttgcaactgatcaatgctgaggtgcaatttcttgttggcatgtttatgcttgctaattgctacacattcctagccattcatgtgaactgtagtttgggaaaatccttttgtttctgctggtaacatgtgtaatcatttcacttcttttaataattgattgaaataaattataagttaagcttataaactatgtgcctcttgttatccctatatgttatatttctcacacataaaccacctcttaatttctgcaaatgtttatacattcaggtcagacttattaaatgcactattgaaaatattgtcgttgacatctcattcaaccaaactggtggaatctgcgcactttgcttccttgagctggtataataatacttttcttttcgaaaattttatgtacttctattccactttaatgtccttctggttaattaaacaaacagttattgaatgtgtatagcactcgatattggtttcgtgtgcttgtctaggtctgcttttattttgttactatgccaaaccttggaaaagtaaatagttgttcattcttcaggttgaccgtaaagttggaaaaaatcatctagtcaagaatagcattatattaatcaaggcatggtgttattatgaaagtcgtctactaggagctcatcatggactgatatcaacttacgcactggaaactcttattctttacatattcaatctattccacaaatctctccatggccctctggaggtaagtacaaataggaaggaactggcttcttcagtcatgtaaaaacatctttaaccaataatacggattataactcttgacctttttacttcatgtttgtcttgttaataggttttatataggtttctggagtatttcagcaagtttgactgggacaactattgcataagtttaaatggccctgttgcattatcgtctttgccaaatcaaattggtgcgctacactgtaatcttatccttgactgtaaccaactaatacatatattctgtttttaccctaaaactttgtatgtcttgcagtcgaagcaacaaatacacctggcagtgatttgctgtttgacaaagagttcctcaataactcggtgcaaaaaacagattctaatgcatgcaatactgagttccgttcaaaatatctgaacataattgatccactaaaggaacacaacaatcttggcagaagtgtgaacaaaggtctgaaactaaaggcacctgtctgttttcttcctctaaattatatttcaaaagaatttctacaaagatgtatgggcatgcatatcatagcatgtgctgagatgcttcctatgtgcatataaaccataatcagcatgcggttgaacttgcacatagtaggggttttctgtacattatttcacttctactaagtttatgtagacattttacttttgtgcagccagctttaatcgtattcggactgctttttcgtatggtgctcagaagcttggtcaagttctcttgttacaaccagaacttattcctgatgaaatttatggatttttcaagaatacattgaataggattggaagtggagtaaggccagacattggagatgaaagctataatgatgcatttcgttgtgagtccttccttggtcctggcaaggcattgtgggatgagatgtcgagcatgaaaatttcctgcaataatcaagatgagaacagaggtcctcaccatctttcaaagtgcttagttaacaatgactcatatgccaccttgaatgtgcctacacattttcatggagatcacatggtagcatcaagtactgatttgagtctaaaatcgtcctgtttcatccaagagacaccaaatcagtatcctttgttttacctagaagatggcaatggtagcagcgaacagtacttggaccatgaaatggtggaacaggcatcttgttgtacagctgaaacctgccatgcgaatgaagaaccatcaatgcatccacaagtttatccaaacaatacgttacatacattttactcaagtttggccaataatttggaatattccaaatctggtcagtcagacatgacaaattcgagtataaatgttgcccatgaggaaaaacaaaaattttctccctccccattgagcttggtggatctatcaggtgatctagatttgcaattgagatgcctccgccaagttcagtatcacctagaatacatgtttgatggttttttgcagtctgttcaagaagcatcttctgactgtaaggttgcaagggactcgtttgaaattccagctgttaacatcacatcgaattctgatgtggtgctgccaggtctgttatcaccttcatctactgaaactgatgagaggagattatctccagtttcctcttctcatagcaccgaagattcttcacagcagtcacatgatgagagcaactggggtgcgtcttgtcagcagaactttttattaataccctctcaaacaattgctccaaccaatggactgtcaccatgttcttcttatgctaattcagataattctgttcaattgtatgatagctcagatgatatctccaatatgcatgaaacagatcaacatattctccaaaaggtaggagctctctgttctcagttgtcatgagtttatatctcttacttttttttggcatacattttcattgtcctcttagggccaagaaaatctagatccgatatgaatacttgactattttatatcttcattatatatgctatacatcttgtcccttggatgtctgacactgacagcttcacttaaacctttagttgttctgctaatcagttaccttatttgtgttacagcacatggtatctttaggacagaacaagacactaatcaatcgacaagtgagagttaaaagcaatcaagcatcagttccaaaaggaaaattttccatttgtaaggagcaaataacacaagacactgcaaccaaggacataaagttaagccggcatttgagagtcaaggacagtgagcatgaatatataagcactgctaagaagatttcgagctataattgtgacacttgcttagaatgtgtcaaacctgaaagtgaagcaatgataccaaggcattacaagcatgcccgctcaagcaagaactcatttgagcatcggatttatgatattgacatggggtttgcccgatctggtagttcacggaatcaaatgccaaaatatcaatcactgaagaatcaggatatgtcaagcttaaatgtccaaaaagagcatgaaattaactggcccagaaaacaaatgccatccgagctgttgaagctccaaaacagtctacgtggcagggcttgctcaaacaagaaattagctgcaaaacaaattaacaataatcacaaagaacatctatcttttgtaagggatccagaacagatgccatataatcaggttaactcaaacaaagagtttgagactgttggcaaatccagccaattattgccacgggtacagctctctcttcataacgacagaagccttacagcatctacttgtcagtcctcattccctgtgacaaaaggatctactcaattcaacgacttggagatgccttcactagaaaatattgagtttggaactttggggtctttttcattgacacttgtgtcaccaaaatcgaataagaatcccaacacacactcaaccagtaagacatgtgccgatgctgctgcattggcattgcaaagccatccaacacaaagcaggtaaaatatttatactcgctctcacattataagatattttagcgcctccatccctcgtctaaattgactatatggtgttaagttacttgcatttctctttgataactgatacatcaaaacaattggtatttggtactcccagcccaccaccctaaatatcttattaacgaatctattcaaaacctaaaatatcttataatgtgaaacaaatgaagcatctactaaatcttcagcctgcaaatatatcaaagactacacagcgaagacatttcagaaaaagtaaaggatcatttaagctctagttagtttgttatttgcatctccagttcattcagtccatgagatagtttttgtgcttttatgctactactatgtataatatgcattctgataacgtaatagtcagtccatgagatagtttttgtgcttttattctacaattcataatgtgcgttctcataatgtaatcttcgctatgttaggtcaccaggattctacaaagttggagatgaagatcacttcccacctctccgtgctgggactcgctgagactttcggtacatacacagatgatacagttgatcataggtttagagaactaaaaggtaaagagaagagctaacaggttgagcttttttcataacctcaggagagcgcaaatgcgaggattctaatagcatatatattcgtccatgtaaagttctgtcgatctcttgtcctcctcaattgtctatagttaggccaagaaggctaatgggtagcaactaattataccattgtagttcttttaccttaagtttaacttgaaagaagaaaaaatcgggggaatatgttagctt</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0336700, RefSeq:Os03g0336700