Os03g0339100

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Revision as of 12:38, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os03g0339100| Description = Similar to PRL1 protein| Version = NM_001056593.1 GI:115452914 GeneID:4332781| Length = 6301 bp| Definition = Oryza...")
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Gene Name

Os03g0339100

Description

Similar to PRL1 protein

Version

NM_001056593.1 GI:115452914 GeneID:4332781

Length

6301 bp

Definition

Oryza sativa Japonica Group Os03g0339100, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:12651499..12657799

Sequence Coding Region

12651827..12651948,12652060..12652084,12652188..12652287,12652501..12652582,12652672..12652728
,12653407..12653488,12653567..12653659,12654759..12654822,12654936..12655021
,12655104..12655205,12655301..12655384,12655660..12655720,12655800..12655866
,12655948..12656025,12656642..12656706,12656883..12656960,12657053..12657225

Expression

GEO Profiles:Os03g0339100

Genome Context

<gbrowseImage1> name=NC_008396:12651499..12657799 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:12651499..12657799 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcgacggcggagccggtggagccgcagtcgctgaagaagctgagcctcaagtcgctcaagcgctcgcacgacctcttcgcgcccacccactccctcctcttcactcccgatccggagagtaagcaggttcgtgtcggctgcaaggtgaatgcagagtacagcgcggtgaagaacctaccaacagatcagggccgaggacaggtcaagagtgctgcggcaccttcaactgcattggcgcttccaggaacacaagatgtcaaagatgctgataacaaaggcagcagtactgctattgttcctgcaccacatatgctccccaaagcaccggattcaacgataccaggcaagaatacaactataacaattcctggttcatctgacagattctctacatctgcactgatggaaaggataccaagtagatggccacggcctgtctggcatgctccttggaagaattatagggtgatcagtggtcacttgggatgggtgcggtcaattgcatttgatccaagtaacgaatggttctgtacgggttctgccgacaggacgattaagatctgggaccttgcatcaggaacattgaagcttacattgactggccatattgaacaaattcgtgggcttgctgtgagccaacggcacacatatttattttctgctggtgatgacaaacaagtaaagtgttgggatcttgaacaaaacaaggttattaggtcttatcatggccatttgagtggggtgtactgccttgctctacatccaacaatcgatatcttgctgactggtggtcgcgattcagtttgtagggtctgggacatccgaacgaaagctcatgtttctgctttaactggtcatgataacaccgtatgctcagtgtttgctcgtcctacggatccacaagttgtcacgggctcacatgattcaactatcaagttctgggaccttgtagctggaaggactatgtgtactcttacacatcataagaaatcagttcgggctatggcgctgcatccaaaagagaaatcgtttgcatctgcatcagcagacaatataaagaagtttagcctgcccaaaggcgaatttctacacaatatgctgtcccagcagaaaaccatcataaactcaatggctgtaaatgaagatggtgtcttggcaactggaggggataatgggagtctctggttttgggattggaagagtggccataactttcaacaagatcagactatagtacaacctggatcattggagagtgaggcatgcatatatgccctttcatacgatgttagtggatcacggctggtgacatgtgaagctgacaagacaataaaaatgtggaaggaagatttgtcagccactccagagacccatcctatcaatttcaagcctccaaaggacatcagaagatactga</cdnaseq>

Protein Sequence

<aaseq>MATAEPVEPQSLKKLSLKSLKRSHDLFAPTHSLLFTPDPESKQV RVGCKVNAEYSAVKNLPTDQGRGQVKSAAAPSTALALPGTQDVKDADNKGSSTAIVPA PHMLPKAPDSTIPGKNTTITIPGSSDRFSTSALMERIPSRWPRPVWHAPWKNYRVISG HLGWVRSIAFDPSNEWFCTGSADRTIKIWDLASGTLKLTLTGHIEQIRGLAVSQRHTY LFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLALHPTIDILLTGGRDSVCRVWDIR TKAHVSALTGHDNTVCSVFARPTDPQVVTGSHDSTIKFWDLVAGRTMCTLTHHKKSVR AMALHPKEKSFASASADNIKKFSLPKGEFLHNMLSQQKTIINSMAVNEDGVLATGGDN GSLWFWDWKSGHNFQQDQTIVQPGSLESEACIYALSYDVSGSRLVTCEADKTIKMWKE DLSATPETHPINFKPPKDIRRY</aaseq>

Gene Sequence

<dnaseqindica>329..450#562..586#690..789#1003..1084#1174..1230#1909..1990#2069..2161#3261..3324#3438..3523#3606..3707#3803..3886#4162..4222#4302..4368#4450..4527#5144..5208#5385..5462#5555..5727#ggctgcttccccctctctcttccgcctcggcgagcagcgacaccaccggagcagggcggccggcggcgacgggcggggcccgacggggaggaggtaggcgggcttggatctgcagggctcacgcggcgtaagagcaggggaagccgtatctccggcggcgttcatcggtgagaggcgacaaaccctaagcatctagtaccatctaggtcgagctttagctgaaatctgtcgtgtgtgcgtgcgttttgttcatcggaattcatggcgatggctgcctgactgctggttttttttcttctcactccctccacagcagcaggaagtcgtcatggcgacggcggagccggtggagccgcagtcgctgaagaagctgagcctcaagtcgctcaagcgctcgcacgacctcttcgcgcccacccactccctcctcttcactcccgatccggagaggtaaatcctgcgcgctcccctctctgcccccatcgttcaccctagaaccctaacggcgctgtttgctaaactgtttcccccctttggtttggttgttgtggcggacggcagtaagcaggttcgtgtcggctgcaaggtctgttcgcacgtctctgttctctacttgttaagattccgtcctttatttgcttggttgatgaagccccgaaaataattgatggcgttgtcggatctttcaggtgaatgcagagtacagcgcggtgaagaacctaccaacagatcagggccgaggacaggtcaagagtgctgcggcaccttcaactgcattggcgcttccaggtaaaatatggtgcccttttattttgtataattgcatcttttgttttccgtaggtaaaatctcatggtattcttgaacaattacagtattacgcaaatgcacattgatgtagattgtttgtgctgcaaaaatcgagacacctgacacaagcatagcaagcttccgtttaaaactgattttacttttacattgagctcacaaatatcttttcaggaacacaagatgtcaaagatgctgataacaaaggcagcagtactgctattgttcctgcaccacatatgctccccaaagcaccgtaagtccattcatagttcgcttgcctgtaacttgtttactcttttcttaattgtaggcactgagaacttcctttttttgattttttagggattcaacgataccaggcaagaatacaactataacaattcctggttcatctgacaggtttgttcacttatctttgctttaatcgttgatatgcagctcaaacacttgatgttgccccaatgtggctaatccaaaaacagaaatgccttcaattgaaactttgaactagctcatggcgtttccccttagccctttatgaacaccacctttgagtggctctagtgcttaggtgaattaggatatgggtgggtcttggtgctcaggaatgggtatcagctaacctttttcgtctttagaatgtgggcagccttgataacttgaagtagtagttgttaaagaaaatgttgttccactgagttgcaataccatcattgtgtataggtgcttcttaggctcctaatggcatgtgtgttttgatgccaagaagagaggctaagaaatttagcctccctaacctggaactagtaaactggagggagagaggctaagccactcaatagattattaattgctttaagtcgatgatggggtctaacaggatcaccagtgtggctacgcattgcaagaatttagactctagctcctgttagatgtggcagtgaggtggaaaaccaaactcctctcatgctagaaacactagcaagcgtatatattccatcctttatgatagaacaggttgaaaattttctagtttaactgaaatatgaatttctgatggcttatatctcatttcagattctctacatctgcactgatggaaaggataccaagtagatggccacggcctgtctggcatgctccttggaagaattatagggtaactttttcctcattagtgctggattttctagttttgcctatgatttgcactaatggtttctcaaaatgtgtgcaggtgatcagtggtcacttgggatgggtgcggtcaattgcatttgatccaagtaacgaatggttctgtacgggttctgccgacaggacgattaaggtgagcttgctctcttcttctgcagtagtgttccaatatgctctgggatttttacatgttactagctgaatgcccgtgctttgcgacaggaattaaaaaagagaaccccgccatacactttaaagcctcaaaaattaaaataaaattattctaattgtaaaactctttaggtcatattattcgtcatcatttttatctcaatttaaaataaactttccttgtttgatggcgtaaggttggggaagggaaagtccacatatctcactgtttggtgggtggtggtgggtggtggcagattcaccactcaccaccaccattggggtcttttagaggagtatagatttagtttgtttatgttgctttttattattctaagctgtttgtgaacgttttgtggcatacatctgaaatcttcatagatttaattttttgctggattgctatacatcccttacaaattttcttcaacaaaagaccacgtggtatgataatggcaagtgaggctagggccatttgacacaacaaagtgttgttttctgagacttgcactctttatatgaatacaaactcccctttcttctttacactaatttctgttgatatacatatccagtatgggcactgatcatagggtatcagcataccacaactttatttcatctcgtatatagcacttttattcgtttaagggctagttttgagctcgacaacagatgtctgttttttttttaattctattaaaatttttctgtttgtttgttgcaatttcttcaagtctagcaatcttgttactcctaacagtgtatatgttctgttactctgtggatgacccctggaggattcagaaaaatactgagtgcttattagttgttcgtgaagtcctattatcagggtttatttggccattaagtttttactagctgtttcttttggatgatcttatggttctgatagaaaaacgaggctatctcttttctctctttccctcctcacatttactagtacattaagtcaacaaaccgacttccccaacaagcaacactactataatttctaaatgctgttagctcattcatcatgtgattctgtcttgttgtagatctgggaccttgcatcaggaacattgaagcttacattgactggccatattgaacaaattcgtggtacgtttttcttggcattggttattaggatctgtatagcagccttccactgctacttgttttactctataagttataagttcatttactgataaattcaatgtgcattgtagggcttgctgtgagccaacggcacacatatttattttctgctggtgatgacaaacaagtaaagtgttgggatcttgaacaaaacaaggttagcttatagttcgatgtagattgcagtatacagggcatattggcattatcgtaacattttgtttcttttcatttttaaggttattaggtcttatcatggccatttgagtggggtgtactgccttgctctacatccaacaatcgatatcttgctgactggtggtcgcgattcagtttgtagggtatataatcacctcttttatttatatcttatgcataatcattagcatacattgtactaaggtaggtttgggtttttgctgaccttcatacacaggtctgggacatccgaacgaaagctcatgtttctgctttaactggtcatgataacaccgtatgctcagtgtttgctcgtcctacggtaagaaagcttttgaatcttttgcagcttattactgcaatatctagttttgcgacttaatgttattctttagttggaggctttcttgttcatagccatgtagatcagctgagttttccttttaaaaattcaatgacaaaactacgcaacaatgatcttgagcacagttatcttacacttttgaggttgttccttgtgctggatagtttcttgacaactgaagtacatactggcttcattctttgaaaagttaatcttatgtttatttgtctcaggatccacaagttgtcacgggctcacatgattcaactatcaagttctgggaccttgtagctggtatttactttagaattttactactgtgtttcttgagtgttttcttgtatctgtccctttacagttatttttcctataggaaggactatgtgtactcttacacatcataagaaatcagttcgggctatggcgctgcatccaaaagagttagtttcaatgccattaaattttcatactatctagtatctaccctgctggaaataattataattttttttcttgtgcaggaaatcgtttgcatctgcatcagcagacaatataaagaagtttagcctgcccaaaggcgaatttctacacaatatgctgtgagcattcttttcacattgttttttgttaacagtgtttgtgatatttttttttatgtaaatagcactggcatattatattgtgcattgtaaaatgcttggatactggatttgaagctcatgtagcttatatgtaagatctgcttaggagtccaataaccttgaactcactttcttcttttaacctctaagctagttaacctgaaagagttaggatatttgaactgagcctctctagtaagctagactatggaaaagtatcaattaccctatacttacatttagctgtagtcctgtttaaattttactttttactgagtaatgaagcatattgtttgttgcctttccatctttggtgtgtttccttggcttcagtttaaactcttaaatcgtgcacccttttttatacttaacatgaagctgcaggctggagatatattttgaaacagaaatagggtttgattggaggtatttcgaggttgatctaaggaaaagaaaatcatattcagatgccttagcaatgtgatttcaagggctttgcttactgttgtaacttgtaaacgaacaatagctaggatcatataacttaaacttgtcaccgattgtcacctttcaggtcccagcagaaaaccatcataaactcaatggctgtaaatgaagatggtgtcttggcaactggaggtatgcattgttgaaaacatcgagtttttgcctccttcctatttattttattaaagaaaaagatggtttaatgtatttagtaatgctgtattttctatgctatacttgctggccgcaaccgattcaataaaattttttgcagatcatattattaaaagtagtaatatcttgtgcaggggataatgggagtctctggttttgggattggaagagtggccataactttcaacaagatcagactatagtacaacctggtaagtattgatttgcatcatgtatgggctgttattatgtttctttaagtcactaaatcgatcatcttgattgatcttatttccaattataggatcattggagagtgaggcatgcatatatgccctttcatacgatgttagtggatcacggctggtgacatgtgaagctgacaagacaataaaaatgtggaaggaagatttgtcagccactccagagacccatcctatcaatttcaagcctccaaaggacatcagaagatactgatcagacacctggtgcatctaatttcagacagggtacttttaactccctaaatacctatgttgttgtagtgtttatgctaaattcaaattggttgaatcacactagggattccatgcatcgccatggaatggacctgtctgaattttgccgtgcttcgcaaatcctccttatctaccgaacagaatattgactgtaagaagttttcatatattagaagagtttcctcttggcgaacatatctgggtttgcccatagttgtggcacagcattgcatttttctttctattcttttcttttcatttttttttggagagggcattgcattcacatagcttccggataatataatcctatcgttggatgtaaagcccctatagggctttaatcagcacgtgacttgcacgtgcgttgacatgtggagcggcgacaccagaactcctgccggtcatgtattgtatgtttcagtaaagttactcttcaaattttagtgcggcatcctgtaaagttactcttaaaatttatgctcaatactcctatatggtgtttctatacctgggagcaaaattgtcatgcc</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0339100, RefSeq:Os03g0339100