Os03g0353900

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Revision as of 12:39, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os03g0353900| Description = Argonaute and Dicer protein, PAZ domain containing protein| Version = NM_001056665.1 GI:115453058 GeneID:4332859| Le...")
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Gene Name

Os03g0353900

Description

Argonaute and Dicer protein, PAZ domain containing protein

Version

NM_001056665.1 GI:115453058 GeneID:4332859

Length

6901 bp

Definition

Oryza sativa Japonica Group Os03g0353900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:13371927..13378827

Sequence Coding Region

13372618..13372862,13372949..13373098,13373187..13373320,13373618..13373724,13373806..13373912
,13374356..13374461,13374873..13374992,13375093..13375249,13375938..13376029
,13376113..13376357,13376443..13377232,13377316..13377573

Expression

GEO Profiles:Os03g0353900

Genome Context

<gbrowseImage1> name=NC_008396:13371927..13378827 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:13371927..13378827 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgcatgaagttcatcgagttgttctgaaaatcttacagttcgttatcaatacaaagactacttcaagtcaaacaagcaggattctacctgatgagctcatcaagttgcacgggttcacaactcttggtggcaaacggccagcatatgacggaagagagagtctctataccaatggttcacttccttttgaatcaaaggagtctgtggtcaaagtatttgatccagaaaagaatgctaaagaaagggcgcaaaaggaatttaagatcacaattgaaattgttggcaaaacaaacttgtaccacctccagcgctttctgctcggaaagcacaggggcatagcccaagaaatcatccatgtttttgatgttatcctcagtgataaactttctcggaatcatgtcacagggcccagatcctttctttgtactcagattggtcaccagggttacattggtgatggacttgactcttggagaggttaccatcaaagcttgcgcctgagaaagatagggatttcactcaatacggatatgtctgcagcatcctttatgcctgtgagaattatccaaattatagatgggttcctgaacataagttacacctcaagacctttgttagagcggaaccgtgtgcagctaaagaaagtattatgtcatgtttgcattgaaacaaaccaccatgatgaccaaatcggaagatataagataacagggatcacccctattcctatgagcaataacatatgtcctgttggtgaggaaggaacaacaatgactgttcttcagtacttctgtgatatggagaaaacaggtgtgcctagtgttggacattggaacatcgctgaagagaaaatcattaatggaggagctttggataattggacttctctgaatctttcacgaatgcgcccggaggaagtacaaaggttctgcagcgacctgattcagatgtgcaatgccactggaatgtccttctatccaagaccagttgtggacttccggtcatcacatcctaacaacatacagaatgctctgagggatgttcacaggccaatgcattcctatgttgattgtgatgagaatcatttttatgctgatgctcattgcaactgtaccgtgtctgtggtcccctcatcatcgaacgacaaagttgctgtggaacaggaggaattacaatttgcctcaacccctggcaacagtggacagggcaaatttcaggttggtttcctgctgaacagacagacgatactagtagatacagaaaatgacgactcagtttctgctgttatccagcaggcaattgaaaagacaaattattggccaaaggatgtgtattacacatactccatgggcatgattgacaaaaagaagatggtgaaggaatcacatctctataaaggttctctcatatttgtcaattccagaagccggggcggtggagagcctcctgctggttgcgagaggattgttgatagaatgattaaggcaaacaaaattcctctactggatcatatccatagtgtgaaggggcatgatccctgggctgaatggtttgagcgtgtgaacttaccaagatcccttttaacatcttcacaagaatggggtggtgtacttttgcaagatgcagcagctaaagttggacagatgttggctctctgtctggaaagggcccattgttctgggaaatgttttggtggctttgacatacgtgatgtctattatatagagtattaccagttgattgacattaatgcccccatgacggatttcacaagtagaagatatataaatgattggttatcgttcaataagattattgatgaccactttagatacactgatccaacctcaggttatctatcatatacactgtacgtggaagattttatgttcagaatatctttacttgaagatgtgccatctactggacgttcttggagggaaagggctgtctttttcaagaatatcagccttgaatcatcagagaggagagtccagattgttgaaggacttgtggggttttatcgtgaaagactcacttcagacagagaattattcgaggaggtattgcaggattgtggctattggaaaagacaaacaagaacggtgcctcgtatgatttctgcgttgacatattctgtaaagaatgaattgcaggactgggtacctgctaatcattactttgagaattgtgggtattcccagctttatttctgtagatgtttctttggacattatacagtaccaggaaggatcacgaagaaggaactggatacagctgtaggcatacttttgccaggtcatatcccaagggctcaaaaaagactgatggtcaactatgagaagacccaagtagatgctgcagtattgtcaccatcaggaaatactgcaaggttcagtgtgcatcatatttttggcattggttctgttggaaatgacctggctctcccacaaataaaaaaggctcttcctccctcgcaaagaaaaaggaaacaaacttgtgacaagtaa</cdnaseq>

Protein Sequence

<aaseq>MHEVHRVVLKILQFVINTKTTSSQTSRILPDELIKLHGFTTLGG KRPAYDGRESLYTNGSLPFESKESVVKVFDPEKNAKERAQKEFKITIEIVGKTNLYHL QRFLLGKHRGIAQEIIHVFDVILSDKLSRNHVTGPRSFLCTQIGHQGYIGDGLDSWRG YHQSLRLRKIGISLNTDMSAASFMPVRIIQIIDGFLNISYTSRPLLERNRVQLKKVLC HVCIETNHHDDQIGRYKITGITPIPMSNNICPVGEEGTTMTVLQYFCDMEKTGVPSVG HWNIAEEKIINGGALDNWTSLNLSRMRPEEVQRFCSDLIQMCNATGMSFYPRPVVDFR SSHPNNIQNALRDVHRPMHSYVDCDENHFYADAHCNCTVSVVPSSSNDKVAVEQEELQ FASTPGNSGQGKFQVGFLLNRQTILVDTENDDSVSAVIQQAIEKTNYWPKDVYYTYSM GMIDKKKMVKESHLYKGSLIFVNSRSRGGGEPPAGCERIVDRMIKANKIPLLDHIHSV KGHDPWAEWFERVNLPRSLLTSSQEWGGVLLQDAAAKVGQMLALCLERAHCSGKCFGG FDIRDVYYIEYYQLIDINAPMTDFTSRRYINDWLSFNKIIDDHFRYTDPTSGYLSYTL YVEDFMFRISLLEDVPSTGRSWRERAVFFKNISLESSERRVQIVEGLVGFYRERLTSD RELFEEVLQDCGYWKRQTRTVPRMISALTYSVKNELQDWVPANHYFENCGYSQLYFCR CFFGHYTVPGRITKKELDTAVGILLPGHIPRAQKRLMVNYEKTQVDAAVLSPSGNTAR FSVHHIFGIGSVGNDLALPQIKKALPPSQRKRKQTCDK</aaseq>

Gene Sequence

<dnaseqindica>692..936#1023..1172#1261..1394#1692..1798#1880..1986#2430..2535#2947..3066#3167..3323#4012..4103#4187..4431#4517..5306#5390..5647#gtctgctctcctcaatcctcccccactccttgggtaaatcgttagcctagccgccacccgtactgagcgctccgccatggcgctcgtctgaacttcccctttagcgcccgccatggcctgccgccccatgtgagtaatgcggttatgtgtagcagggtagttttttcctattgctggagaagatcctccacttaaatggagaaaatcgacggggagatcgctcttttgttgctggatttctgtttattccgatctgttagactgctagtccctaaataggtgtagctttcgtttctgggcattctatttttcatggttgcggcgtcactttcatatctctttcacccatgaatcgactccgatagtgtgtgttactcgtaacctgtactactgcatttccattacatctagataatcagaaccgccactcaagtttcagtagtttggtcttgtaatggtggttctaattctgttggttgactgctctctgaaattaattttattcgtttagttattattatgtgatcttgaggtgtaggttcatgacttcatgttaagtagctccaaattattcttcattcccccctcctccccctgaaaatcttgttctgaattccaatagaaaagttattcttcctttttcccctgaaaatttcgttctgaattcccaataaaaaggttataaatttatatgcatgaagttcatcgagttgttctgaaaatcttacagttcgttatcaatacaaagactacttcaagtcaaacaagcaggattctacctgatgagctcatcaagttgcacgggttcacaactcttggtggcaaacggccagcatatgacggaagagagagtctctataccaatggttcacttccttttgaatcaaaggagtctgtggtcaaagtatttgatccagaaaagaatgctaaagaaaggtttgtgtgattctagctaagaattttcttatgtaccgagctacatgtttctcaatattagattattatgtcttgcccttctgcagggcgcaaaaggaatttaagatcacaattgaaattgttggcaaaacaaacttgtaccacctccagcgctttctgctcggaaagcacaggggcatagcccaagaaatcatccatgtttttgatgttatcctcagtgataaactttctcggaagtatgagatctttctcatttgacatttgattgataacttcttgaccagggtattgacaatgttgtaaatacaattaccttttttgcagtcatgtcacagggcccagatcctttctttgtactcagattggtcaccagggttacattggtgatggacttgactcttggagaggttaccatcaaagcttgcgcctgagaaagatagggatttcactcaatacgggtacttccgttcagttattgcttattagttttcactgaatataaatattattccctctggtcataactatttgatgttaggacaatatttgatgaaactttaaccatcaataacttctaaaaaaacaaaaaaaatggtatgtgtaatgccttaaaaaagctatcagaaaattattctaatacaaaatttatggtcaaaatttcaaaagtttgaccaaatcttgacctaaatgttaaatatttgtgactggagggaatatttagatactaactaccgtttttgatctacttcattcagatatgtctgcagcatcctttatgcctgtgagaattatccaaattatagatgggttcctgaacataagttacacctcaagacctttgttagagcggaaccgtgtgcaggtaatattcctaccgagggaatttacaaaatgtgctatataatacctataatgactaacattcttttttcaacatgttcagctaaagaaagtattatgtcatgtttgcattgaaacaaaccaccatgatgaccaaatcggaagatataagataacagggatcacccctattcctatgagcaataacatgtaattatctttcctctcacggctgctgttatagcttctattttgtttgcatgctgtaagcaatgggggcaaaaatgtaccagatcgttgatacttgatataatattagaaaggtctgtgttaaggattctgggcatattggtacattaacagtatgtggattttgggcatttttttttctgccatagatatttttttcttgaacatgcaggttctgccttagatatctatctgtgcaattgaaaatccataactattcaattgaaatactgtgtaaatgatgcattacaaacaatttttcctgtccggatggagtatagcagtttgttgtcatcttttcaatagggcctacattttgttgttatacttgctcacttctttataacatgaataattactgttttattcctcccaaactgatgcctgttattcgatgctgttagatgtcctgttggtgaggaaggaacaacaatgactgttcttcagtacttctgtgatatggagaaaacaggtgtgcctagtgttggacattggaacatcgctgaagaggtgatgacatgcttcattgttataactcagtttcgcccaaaactcaaaataacttagcattgctttgttgaagcgaattcatggttacttgtttagcttttttaatgtttaggctcataacttttgttttttatgtggggatagccgaagatgtctgaccctttttgtttcagggtatgttaaaatgacaaaccagttaacatatgttgtatctctctcataaagtcttatttgatatgtatgtaaaattcgtgaagatacaaattgtagtactcagccaacataatttacttgcagatgcaaatttgagttttatttaaagggaaggcactaatattataagtttcagatcgttcgtagaaatatttcttagtattgttacattttttttctaattgtttatttttacagaaaatcattaatggaggagctttggataattggacttctctgaatctttcacgaatgcgcccggaggaagtacaaaggttctgcagcgacctgattcagatgtgcaatgccactggaatggtaagtcctgcaaagttttaaagcattcaaacgattacaaatattgcaattgactttgatatatttgttaaaaaaaatgactttgatatcaactctgtagtccttctatccaagaccagttgtggacttccggtcatcacatcctaacaacatacagaatgctctgagggatgttcacaggccaatgcattcctatgttgattgtgatgagaatcatttttatgctgatgctcattgcaactgtaccgtgtctgtgggtgagttttcttttggtatctttgttcttctcttttctggattaatttgcttaaagcttcatatccctctttccaagagcaaggaaaatggcactacaaaagtttttcacaatggtttaaccgctaattggaaaggataagctttgttttacaatccctactcatcatgtttactgcaatatgcctcaaatcgtcaaatgacgtcttttcagtgaactgaactactgccatttatttgttatgcaccatcattatcatcatgtgatctgttccatgacatttgtctatgaaatctactgaagcatgtcaaatagttttgattggttgcctcatttcaccgattcatactaaatagtgcgctaatgaatccccttctttttgccattagattttccaatcgaattgactgtaagactcgtaaagatcaactttatgaagatcccattgtattccagaagctcagaacatagggcccgatatgccccaattacagcttatccactaataattccaaccccctcaacttgttctgaaaaataggattctgtgtcattcctggctgtattttttcttgtaatacactagtactacagtgctaatttttgtactgttttatgtctttgtttcttcatattcagataactaatttgttgaaactgatgtgggttcccctttttcccctatacagtcccctcatcatcgaacgacaaagttgctgtggaacaggaggaattacaatttgcctcaacccctggcaacagtggacagggcaaatttcaggtatgcttgcttctgagtcctttacatttacaacattcataacttgcatttgatcctcaaatggttttctttgttatatgtaggttggtttcctgctgaacagacagacgatactagtagatacagaaaatgacgactcagtttctgctgttatccagcaggcaattgaaaagacaaattattggccaaaggatgtgtattacacatactccatgggcatgattgacaaaaagaagatggtgaaggaatcacatctctataaaggttctctcatatttgtcaattccagaagccggggcggtggagagcctcctgctggttgcgagaggtgtgtattcctatctttagaacatatatataggattgctcacagaacatcaatgtgactcttttgtgtgtgtgtgtgactacaggattgttgatagaatgattaaggcaaacaaaattcctctactggatcatatccatagtgtgaaggggcatgatccctgggctgaatggtttgagcgtgtgaacttaccaagatcccttttaacatcttcacaagaatggggtggtgtacttttgcaagatgcagcagctaaagttggacagatgttggctctctgtctggaaagggcccattgttctgggaaatgttttggtggctttgacatacgtgatgtctattatatagagtattaccagttgattgacattaatgcccccatgacggatttcacaagtagaagatatataaatgattggttatcgttcaataagattattgatgaccactttagatacactgatccaacctcaggttatctatcatatacactgtacgtggaagattttatgttcagaatatctttacttgaagatgtgccatctactggacgttcttggagggaaagggctgtctttttcaagaatatcagccttgaatcatcagagaggagagtccagattgttgaaggacttgtggggttttatcgtgaaagactcacttcagacagagaattattcgaggaggtattgcaggattgtggctattggaaaagacaaacaagaacggtgcctcgtatgatttctgcgttgacatattctgtaaagaatgaattgcaggactgggtacctgctaatcattactttgagaattgtgggtattcccagctttatttctgtagatgtttctttggacattatacagtaccaggaagggtatgtgcactttcatgttcttttctcagaagttatggaacaataggtttgtagacatgtaacattcatacttgtttgtttagatcacgaagaaggaactggatacagctgtaggcatacttttgccaggtcatatcccaagggctcaaaaaagactgatggtcaactatgagaagacccaagtagatgctgcagtattgtcaccatcaggaaatactgcaaggttcagtgtgcatcatatttttggcattggttctgttggaaatgacctggctctcccacaaataaaaaaggctcttcctccctcgcaaagaaaaaggaaacaaacttgtgacaagtaaggtaatgtgtttttcatggtaatcaaatagcactaaatactagtaatttactttatcatgatttaagtttctgcatgaatgtcgttgtctttagatactagtttattttgtattataaaaacagggaatgatataatttttatttttttttgtaaaatttggagggaaccttttaggaatctaacatttgtattggtatatatattgaactgaagttatgattgttgccaagttacgtttgcttttaaacttcacttatctttctaatgtgaaccaaatttctgatagtagtgttctatctataatcagaaggtcatgtggtgcattgtctggtactctggttcagttttttttttgtgttgcatctttgtttcttgtcatttttgcattaatattcttctgtcttgccatgagcaaggaaaggtataaaagtttttggcaatggtttagctgtgaattggataaaaaaaaaccttatttgcatattatctcaacaaaatagaactccttatttaattatcatgttctgaaatcggtctttgtttactgtaatgcacctcagtccgtcatgcgtgtgatctgctttcaaagttaacttaactacttttcgttgcttattacctgttcttcatatttgttttacaaatctgctgccttcaactcctatcattttgcttctcatgctaccacgttactttctgggaacttgcaagtgaactgccgaaatattttctctcccttgttttttccttttcatattcagatgcctaagttgctaagtgattgtcaccgctgattcagtgcttttttcctgtctgtgcagtctaactagcctactatacacatgtagctgcttctctgcaaacttcccgttggtagcagagagctctgatggcagcagcgggcaagctgtggaggtgcgttaacttcccaaagatcaaaggttcccaactgcttatatgatgagatgttggcgattcccatagagatgtggttgatgaagtttagttgaagattcccaactgcttataagacttctcttgaactggttgctggtagttttttttttgctgctcgttgtagtagattgtcagtgagcttctgtggtatgcaaggcactcagcttgacacaatgcaactatgccaagtatgttaagttcccagtagttttgttatctaacctttgttctctgtatgatatttgcctcatcagctgctctgctcaaaatgcttccttttatatttgtagttttg</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0353900, RefSeq:Os03g0353900