Os03g0376000

From RiceWiki
Revision as of 12:40, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os03g0376000| Description = contains InterPro domain(s): IPR000348, IPR009038| Version = NM_001056754.1 GI:115453236 GeneID:4332955| Length = 35...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os03g0376000

Description

contains InterPro domain(s): IPR000348, IPR009038

Version

NM_001056754.1 GI:115453236 GeneID:4332955

Length

3523 bp

Definition

Oryza sativa Japonica Group Os03g0376000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:15394779..15398301

Sequence Coding Region

15394990..15395134,15395219..15395295,15397674..15398150

Expression

GEO Profiles:Os03g0376000

Genome Context

<gbrowseImage1> name=NC_008396:15394779..15398301 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:15394779..15398301 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggccgcgcgatccctccaccacctcctcctcctcctcttcctcgccggcttccactccctctccctctcccccgccgccgcactgcggttcgacctgcagtcgggccacaccaagtgcatctccgacgacatcaaggtgggcgccatggcggtgggcaagtaccacgtcgtggtgcccgaggggggcggctccacctcctcctcctcctcgtcgtcgtcgtcggcgcagccgctgctcccggagtcccaccgcgtctcattgcgggtcacgtcaccctacggcaacagcctgcactactcggagaacgtgcagtcgggcaacttcgccttcacggcgtccgaggccggggactacctcgcctgcttctgggcgcccgaccaccgccccaccgccaccgtcggcttcgagttcgactggcgcagcggcgtctccgccagggactggaccaacgtcgccaagaagggccaggtcgatatgatggaggttgagctcaagaagctggaggatactatcaactctatccatgaagaaatgttttatcttcgcgcaagggaggaggagatgcaggaactgaacaggagaacaaactcaaggatggcttggcttggtttcttctcactagctatctgcctgtcagtggcggggttgcagttgtggcatctgaagaacttctttgagagaaagaagcttctataa</cdnaseq>

Protein Sequence

<aaseq>MAARSLHHLLLLLFLAGFHSLSLSPAAALRFDLQSGHTKCISDD IKVGAMAVGKYHVVVPEGGGSTSSSSSSSSSAQPLLPESHRVSLRVTSPYGNSLHYSE NVQSGNFAFTASEAGDYLACFWAPDHRPTATVGFEFDWRSGVSARDWTNVAKKGQVDM MEVELKKLEDTINSIHEEMFYLRAREEEMQELNRRTNSRMAWLGFFSLAICLSVAGLQ LWHLKNFFERKKLL</aaseq>

Gene Sequence

<dnaseqindica>3168..3312#3007..3083#152..628#gtagatagttacacaaaccgagaaggtaagaaggaggtaaaatagactccgttccgttccgttgcctggacacgcctcgcctcctcgtctcctggaacaacgaaacaggcgaacgccgcgtcgccctctccgatctctccccgcctccgccatggccgcgcgatccctccaccacctcctcctcctcctcttcctcgccggcttccactccctctccctctcccccgccgccgcactgcggttcgacctgcagtcgggccacaccaagtgcatctccgacgacatcaaggtgggcgccatggcggtgggcaagtaccacgtcgtggtgcccgaggggggcggctccacctcctcctcctcctcgtcgtcgtcgtcggcgcagccgctgctcccggagtcccaccgcgtctcattgcgggtcacgtcaccctacggcaacagcctgcactactcggagaacgtgcagtcgggcaacttcgccttcacggcgtccgaggccggggactacctcgcctgcttctgggcgcccgaccaccgccccaccgccaccgtcggcttcgagttcgactggcgcagcggcgtctccgccagggactggaccaacgtcgccaagaagggccaggtcgatgtgagtgcctctctctctctctctctctccccccaatctgggatcccccaaactctttttgcttactttgttccaatctgttaggatcaatcaatactacacggcagaattagttttttttttgaaaaaattgttaaatattgtgatccatgggttgaggcattgagcgatcgagggcttactaaaccagaattaggaagaataaactcttaccttgttccaagtgttctttcggataatttgttagatattatgacagatggattgaggcattgagcgattgtgggcttactatatagaataggaagaacaaattcgcagcagctcatagtggagtggagacactatgtgggtttggctgaatgctccttaacgtcacctttgtgattctagcttggatttgattaagcaggtgtgcattgcattgcgtgccagattaacatctatagattgcaatgccgaatgcctggggggttcttagtagatggagactttcttatgctctgatctagttggatgcacgatttggttgtgtcaaataattttgtaatttatgtgtttttatacatgcttgatgcatgtaaggggtttggcatgttttgtcttgacatttggttaagtagattctctggtttggagctgcatgcttcttataatgatttcttttgtaccttttatcgattgatttgttgttaggttgttacaattaatcctcttttccaacaggattggtatactcatccagggggcattttattgcatttctgtgtcagaggctagaaaatttggtgtttcttttctgaaccaaatatgagttaaccagtatttttctttgggtatcaccccttaaggacttgttgtttaccttgatcaaacatggctgttcctttttcaattttgtctgtggaggtgcttgaacataaatcagtactcagtttagtgacctaattttgctaaaatttccacttcagttcatttggtttatgaatttatacatatggactagcaatcaagaaaagtgcagttttagttggatagtgggtcaataggtaagcatgggtggacccacttgcagccctagtggcttcttctccttattgaatgtacttaccttataaaacttcgtctttcactttatgcatattaacgtatgctttattggtgatatggcgcataatcttgataaccctaacacagagagaaggcatgatttatacttgctaattttggtgaacacaagtcattgttgattagataggctagggtgctagaccaataacagaattctcccctcgtgctgccacctccctgcatcgctccctcccgtagcacctcattcatccctcagcgctctgcagcacttcatagtccatacgtcacatccctggccacatctccttgttctggtccctccccacattagcccctttggcatcgttgatgcctgtatgccctatatgaggcagcagcagtagtggccaaggagagttcgtcatggttgtattgactttgtcgttgatagatgccaaaaagaggacagctatgtcatacccagtggtcaattgggtttataatttacgataaactttggcaaagggcccaactttttagcctataaaatttgagggccaggcctaaaatggggtgatctgaatttctatttttttacctaaaaatatttaagggctaggtagggttgtgaaagaacccatcaccctaggtagatataatttacacccatagttcaactcccatgtatgaagcttgaaaggttactcctttcttcaaagcgctaatgacgtagtgactgcataaaaatggtttgcctttggcatattgcttcaaaatcaagaaggaactggtaatttttttagaaaggtattgctcccaccaagtaggcctcttcacaattcatgttgcaccaatgacaaatcatgttttctatccatttcctaattaattgtgaggttaagcaatacatgttagttcacactagagcatgttcatatgttatttaagtggattttccactttggtttaccaggattggaatccatgaattgtgggttgtaaaccttaagaggctgtcaaatatgctactgattattatgttcattagcacagtagcatgggtagtaccgcttactacaactgtacactatcatatcgttcacttatattgttcaatcatatcccctcccttctctctctaactggtgactgtagcatcacaatgggtcttatcatgcaactcattatcagcagtattacacattgtaaactaatatgttaatgtggacatgcaaaatcacctccatattgtagtatttgcagaaatatatcttttgttcacacatttatcttttgatatgtggcagatgatggaggttgagctcaagaagctggaggatactatcaactctatccatgaagaaatgttttatcttcgcgcaaggtatggcttgcaatgataaaacatttctttgtgaaattcaatatgatctcttaaatcattattatccgtgtttcatttctctagggaggaggagatgcaggaactgaacaggagaacaaactcaaggatggcttggcttggtttcttctcactagctatctgcctgtcagtggcggggttgcagttgtggcatctgaagaacttctttgagagaaagaagcttctataattctgactcagaacatttaggcataaaattgtgtgatttctctttttatgcttaccaggcgtaaatttcctgcaagggacagatgttagcatagttgaggaacatttcttttcagtttcctagaccaacttaaatagatgtaaaatgcaaagacgacaccaatttttgtttccttgcttgcaaagtatgttgttttcatggttcaaaagac</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0376000, RefSeq:Os03g0376000