Os03g0389700

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Revision as of 12:41, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os03g0389700| Description = Similar to M-160-u1_1 (Fragment)| Version = NM_001056806.1 GI:115453340 GeneID:4333014| Length = 4871 bp| Definitio...")
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Gene Name

Os03g0389700

Description

Similar to M-160-u1_1 (Fragment)

Version

NM_001056806.1 GI:115453340 GeneID:4333014

Length

4871 bp

Definition

Oryza sativa Japonica Group Os03g0389700, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:16154786..16159656

Sequence Coding Region

16154898..16155482,16155593..16155870,16157030..16157306,16157398..16157640,16159091..16159372

Expression

GEO Profiles:Os03g0389700

Genome Context

<gbrowseImage1> name=NC_008396:16154786..16159656 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:16154786..16159656 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgtcgctcgccaccagctcctcgatggccggtggggcggcggtggttccacgcagcgcgacggcgacgacggcctcggcgttcgtcacgatgaagcggcgcgccacggccgtgcgcgccgtacacgcggcggagccgtcgaagaacccgcccgtcggcgtcccgtccgcggcgaagacgtcgtcgccgtcggtggcggcgccggagaaggcccccgtggcggccgcgcccgcgcctgtggctccggctccggcggccacgaagcaggtggcgccggcgaggtgggcggtggacagctggaggacgaagaaggcgctgcagctgccggagtaccccaacgcggcggagctggaggcggtgctcaagacgatcgaggcgttcccgccgatcgtgttcgccggggaggcgaggcacctggaggagcgcctcgccgacgccgccatgggccgcgccttcctcctccagggcggcgactgcgccgagagcttcaaggagttcaacggcaacaacatccgcgacaccttccgcgtcctcctccagatgtccgccgtcctcaccttcggcggccaaatgcccgtcatcaaggttgggagaatggcggggcaattcgcgaagccgaggtcggaggcgttcgaggagagggacggggtgaagctgccgagctacaggggcgacaacatcaatggcgacgcgttcaacgagaagagccgcatccctgacccgcagaggatggtccgggcctatgcgcagtccgccgccacgctcaacctcctccgcgctttcgccaccggaggatacgccgccatgcagcgcgtgacgcagtggaacctcgatttcacccagcacagcgagcagggcgacaggtaccgtgaattggcacacagggttgatgaagcccttggctttatgtctgctgctgggctaacagtggaccacccgttgatgacaagtactgatttctggacctcacatgagtgccttctcctaccctatgaacaatctctgacccgtcaggactccacaactggtcatttctacgactgctctgcccacatgctatgggtgggcgaacgcactcgccagctcgatggtgctcatgttgagttcctcaggggtgtggccaaccctcttggcatcaaggtgagtgacaaaatgaacccaaccgagttggtgaagctgattgagattttgaacccatcaaacaagcctgggagaattaccatcatcacaaggatgggggcagagaacatgagggtcaagttacctcatcttatccgtgcggtccgccacgctggacaaattgtcacatggattactgatccaatgcacgggaacaccatcaaggctccttgtggtctgaagacacgcccctttgactccattgccgaggtacgagcattcttcgatgtgcatgatcaagaaggaagccacccaggaggtgtccacctcgagatgactgggcagaacgtaaccgagtgcatcggcggatcccgaaccgtcaccttcgatgacctgggtgaccgctaccacacccactgcgacccgaggctgaacgcgtcccagtcgctggagctctccttcatcatcgccgagaggctgaggaggaagaggatccggtcgtcgaagctgaacaacatgttgccgttgccacccttcggtgtctga</cdnaseq>

Protein Sequence

<aaseq>MSLATSSSMAGGAAVVPRSATATTASAFVTMKRRATAVRAVHAA EPSKNPPVGVPSAAKTSSPSVAAPEKAPVAAAPAPVAPAPAATKQVAPARWAVDSWRT KKALQLPEYPNAAELEAVLKTIEAFPPIVFAGEARHLEERLADAAMGRAFLLQGGDCA ESFKEFNGNNIRDTFRVLLQMSAVLTFGGQMPVIKVGRMAGQFAKPRSEAFEERDGVK LPSYRGDNINGDAFNEKSRIPDPQRMVRAYAQSAATLNLLRAFATGGYAAMQRVTQWN LDFTQHSEQGDRYRELAHRVDEALGFMSAAGLTVDHPLMTSTDFWTSHECLLLPYEQS LTRQDSTTGHFYDCSAHMLWVGERTRQLDGAHVEFLRGVANPLGIKVSDKMNPTELVK LIEILNPSNKPGRITIITRMGAENMRVKLPHLIRAVRHAGQIVTWITDPMHGNTIKAP CGLKTRPFDSIAEVRAFFDVHDQEGSHPGGVHLEMTGQNVTECIGGSRTVTFDDLGDR YHTHCDPRLNASQSLELSFIIAERLRRKRIRSSKLNNMLPLPPFGV</aaseq>

Gene Sequence

<dnaseqindica>113..697#808..1085#2245..2521#2613..2855#4306..4587#caccttcctcctcaggagacaccacccgccgccgccgcctcctccattaccgagaagaagagaaacctctcttctactgttggatccaactactacctacccgcacgccgcaatgtcgctcgccaccagctcctcgatggccggtggggcggcggtggttccacgcagcgcgacggcgacgacggcctcggcgttcgtcacgatgaagcggcgcgccacggccgtgcgcgccgtacacgcggcggagccgtcgaagaacccgcccgtcggcgtcccgtccgcggcgaagacgtcgtcgccgtcggtggcggcgccggagaaggcccccgtggcggccgcgcccgcgcctgtggctccggctccggcggccacgaagcaggtggcgccggcgaggtgggcggtggacagctggaggacgaagaaggcgctgcagctgccggagtaccccaacgcggcggagctggaggcggtgctcaagacgatcgaggcgttcccgccgatcgtgttcgccggggaggcgaggcacctggaggagcgcctcgccgacgccgccatgggccgcgccttcctcctccagggcggcgactgcgccgagagcttcaaggagttcaacggcaacaacatccgcgacaccttccgcgtcctcctccagatgtccgccgtcctcaccttcggcggccaaatgcccgtcatcaaggtagtactagtacacccgatccgaaaattcccaaaacaaaatccaatcacgcattccctcaattcctttttctacgattcgattcgattcgtgtgtgtatgattgaaaaggttgggagaatggcggggcaattcgcgaagccgaggtcggaggcgttcgaggagagggacggggtgaagctgccgagctacaggggcgacaacatcaatggcgacgcgttcaacgagaagagccgcatccctgacccgcagaggatggtccgggcctatgcgcagtccgccgccacgctcaacctcctccgcgctttcgccaccggaggatacgccgccatgcagcgcgtgacgcagtggaacctcgatttcacccagcacagcgagcagggcgacaggtgagaagagatcttccatgcacttttgacatgggaccacctatatatttatcgacaaattttctactaaaaatttgacagatgtaattatagtacaatcgtagtgtaattacattgtaacttatatataattacactgtaacttgcctgtaactacagtgtaacttgtatataagttcacgtaattttgaatcgttagatctattacaagatttgttctggtgaggaagaaaaaaatcacagcacacatatatgtgaaaggatttgttcccacgatctctattttactgaaataacatgttaccgagagattcttaaaagttacattatagttatagtgtaattacatacaagttacagtgtaattacactacgattgtactgtaattacatccgacaaatttttggaggaaaatttgtcgacaaatatatagcaaattcgtttgacatagcttttggtgattctagtagatgttttgcaacttttgctgcgataaaattggcatcgcgtcgttgtcgaatttaaagggttgttgttcaattgctcccacatacctccctgtcaagataacgtgacaacttggtttgcaaacgattgatgctacagcataatacattcttacgatgtaggttaggattggaaattatgatttatattatttttctttcgggtagggaatccatgagagttggtcatcgaaacatgttatccaaatttctaaatatttaggtgctctatataaagaaattaccagtcttttgtttattgacgtttgataattgatcaataaatttctttgattctgtaaaacaaaggtacgtaattgcaatatttccttgggctaagcagtatagtttaaatggagaaacaagcactggattacatcattctgctactattctagtactgttgtttctataggagaggctttgaaagcattggaccattcatcgtatccattctaactcaagggaagttagattccacttactactgtttggatatgaaattagtcctcctcataattccatcttgctctgtgtcaatctctgttatcatttatcaataacagttgttaaaatgctaaaggcttttggtagtatttggtaagttgtcatgctatccaatgatctgacaattgttggtatgctggtgcaggtaccgtgaattggcacacagggttgatgaagcccttggctttatgtctgctgctgggctaacagtggaccacccgttgatgacaagtactgatttctggacctcacatgagtgccttctcctaccctatgaacaatctctgacccgtcaggactccacaactggtcatttctacgactgctctgcccacatgctatgggtgggcgaacgcactcgccagctcgatggtgctcatgttgagttcctcaggggtgtggccaaccctcttggcatcaaggttgcctttagacccaacttcatatttacagagttaaattcacccaacccttgctgacatagaaaaaacgctcacaaaatatggattgcaggtgagtgacaaaatgaacccaaccgagttggtgaagctgattgagattttgaacccatcaaacaagcctgggagaattaccatcatcacaaggatgggggcagagaacatgagggtcaagttacctcatcttatccgtgcggtccgccacgctggacaaattgtcacatggattactgatccaatgcacgggaacaccatcaaggctccttgtggtctgaagacacgcccctttgactccattctggtaagttctgtttttcgatacaccgtgtctgttttattgtacaattgcatccacaaaatatataaacaattcgaaagaagatttagattttcttgacgttcttagctggtatgctaccctatcaacataaaagaacagaaagaggaacacgttttgggcgtgtactcatgaaaatagaagaattttctggggagcattgtatgagctaactagctgatgcattgtcaaatggcaatgttgatgatgatggtgtagcgtgttatattccactacttgtttcagatgttccagttcagaatccataggggggactgctattgaaaattattcgtttaactagatgatcattagttgtctataataaaaaaggttggtgggtggtcagtgttagctcaaatttgtattccctggggataatctagaccacaaaaagacatactaatggtggagtagaatgttgtgttaggtatagatgctggcacctatcaactatcatatgttgtttcattgcgaaggtggctagtggactagtactgccgtacaatagagaaaagatcttttggtctctatcataggtggtcacaagtggtacatgtcagttaaatggtttttagtgaagtgggtccaatggtatgatagaaattgatctactgaaaccacttcttgatgtgggaactgattggggagtattggaggttgaaatatcttgtcattcaagaatatttgggcgcatggggcatctactgagttttttcctgcaactaatgccatggtgacaatggctactccctccgtccagaatgtaacaaccatcttaggataatgtatctggacatacattatcctagtatgggtctcattccatcctagattgctgcatcctagaatagaggtagtagtgaatagagaaatactatctgtgggtagtgtaagttcaagggcagaggatggtgacatcacaggacttctggacttcatgagtcttcaggatttttaaatcaactgaaaggcattaaaaataatgggtctcttatagtatacattatgccgatagaaaattgcttgtcgcattcaacgaacgatttggtgtaacagtgtacagaccaaaacagtccttgtcaccttaatgttgattatgggatattaggattctattggaagatgctgacaacacaaatctgaaagagcagatgttctgcatgttggaatgacgaaggaaaaaaaatgagatttggtcacaaactataatccaagactcgtcaatatttacttaataagactttagtcgttgaaccgcaagactggcaatagctatccagtgatagatatatctgctcaatgattctcaactgattgtttgacatgtaccttttaaaaatgttgtattctgcattcaggcccatgcaattatcagactgactaatcatgagcttgtaatctatgacaggccgaggtacgagcattcttcgatgtgcatgatcaagaaggaagccacccaggaggtgtccacctcgagatgactgggcagaacgtaaccgagtgcatcggcggatcccgaaccgtcaccttcgatgacctgggtgaccgctaccacacccactgcgacccgaggctgaacgcgtcccagtcgctggagctctccttcatcatcgccgagaggctgaggaggaagaggatccggtcgtcgaagctgaacaacatgttgccgttgccacccttcggtgtctgaatctgaaatgggtaagggaaaccaggggaagacggaggaatgacgaacggggtagataagatagctgcagcaagaactcgacgacgcctattccatttgttggtgggatgctcttggtgaaatcctatattttgcgagcttttttttctgttgtaacttttcagttggtatatatatgctctgtaatatcatgccaggctgaaaggctttgacatttcggtttttctatgtttctatcatggataagagaataaaatgcaagatagaagaaggctttgtgaata</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0389700, RefSeq:Os03g0389700