Os03g0391700

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Revision as of 12:41, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os03g0391700| Description = Helix-loop-helix DNA-binding domain containing protein| Version = NM_001056817.1 GI:115453362 GeneID:4333025| Length...")
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Gene Name

Os03g0391700

Description

Helix-loop-helix DNA-binding domain containing protein

Version

NM_001056817.1 GI:115453362 GeneID:4333025

Length

3657 bp

Definition

Oryza sativa Japonica Group Os03g0391700, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:16236545..16240201

Sequence Coding Region

16237314..16238261

Expression

GEO Profiles:Os03g0391700

Genome Context

<gbrowseImage1> name=NC_008396:16236545..16240201 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:16236545..16240201 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgggggagaaggttaatccctggtgccattggtctaatcccccatggaccgagagctctgcaaacaatctccacccacccgatgttagcctcgacaacacaaattcagtggcgttgccaacatatctgaacagcgatggctacatttattctggagttgctgcatctatgccgtctattgcagcatcagttactgacagacctgtttcattctcttctagatttgtcacaacattggtacccagtgtaggcttatcaacagctgagacactgagaaagagacctctggttttctttcataatgtgaataataccttcactgtaggtcctctcctgagcaaggggacattggatacagttccagagctccaaggtagcaatgagaccaatgtaactgatgttggagcacaaaatactgagtgtatgcatgagaatactgaggagattgatgcactcctgtgttccgactcagatgaagggtgcttgaaagtgcaagaactcaacaacagagtcaggaaatacccaatgcagaatgacaccatgagtgtggagtcggtagcaagcgctggtgcttcccaaccagcaaagaaaagaagactaagctctggtaccgacagatctgtggttgacacagccagctcagcaaggcctgaccactccgttgatcagaaacatctcagccatgacgacgacgcacagtcgtgttgtattggtgaagtggaaagcgatcaccagtttgctctgagggaaggtgaagaagcagaaggtgatgatggccccgatgatcggaagcggagaagagagaggatccaagagactgttgctgcactcagaaagatagttcctggaggcattgccaaagatgccacagccgttcttgatgaagcgatatgctatctcaagtatctaaagctcaaggtcaagacactgggagctgtttccctctag</cdnaseq>

Protein Sequence

<aaseq>MGEKVNPWCHWSNPPWTESSANNLHPPDVSLDNTNSVALPTYLN SDGYIYSGVAASMPSIAASVTDRPVSFSSRFVTTLVPSVGLSTAETLRKRPLVFFHNV NNTFTVGPLLSKGTLDTVPELQGSNETNVTDVGAQNTECMHENTEEIDALLCSDSDEG CLKVQELNNRVRKYPMQNDTMSVESVASAGASQPAKKRRLSSGTDRSVVDTASSARPD HSVDQKHLSHDDDAQSCCIGEVESDHQFALREGEEAEGDDGPDDRKRRRERIQETVAA LRKIVPGGIAKDATAVLDEAICYLKYLKLKVKTLGAVSL</aaseq>

Gene Sequence

<dnaseqindica>1941..2888#atttccgtccgagggggccgataagagaagccgcgccgcggcgcacgctctcgctgtctctctctctctctctctctctcgtcctcgtctcggtctcgccgtgcggctctctctcgtgagcaacagcacgcgccgcggtcggcctccccttcaattccttcggctttggcccgggcgggtgtgtgagtgctcagctcctatcgccgattcgtcgtcctcctcctcctcatcctgctcgatctggtgagtgcttgatttgtttttcttggttgggtggggatgtggtgctctgctcgatcgaccccgtgatgttcttctcgtaaagattcgtgggctagtttggttctgattctgtatcgacgtgtctcgcgttgtctgtcgctgcgggtagagttcttcagccgctcggatactttcggtcttcttccccatggataaaagaggtttgtgtagtaagtgttagtggtatgtattctgtgtatactgtaataactgttgtgttgttgagtccggatggtgtcaaatcggttggtgtttttggagattttaagatgttcctcgctaggtaaaaaaagaacaaaacaaagaaactggggaagttttgtttcttggctcatacaggggatatttgcatgctgaagtccggtcaaacgaccaaatttgcttcttcccttttctcttttggaggctctgcttcttcccttttctggtttccggagctagatttgtggtttcttgtagtcaggtcgaatatggtgtgtgaagtagctacattgataccgatttcattgtcaaaatcacatcttggggaaactttggagcttgaggtggttttcatttagatggatgcttgtgcataaggatttacgttgtgcccacgttaacaatgccgagcatatctttccctcttctgttttcttttgtaaatttaggcctagttagtttttttttaatctggaatgttttaggaatttactatgttattagttaagttaggaggttcagagatatcttgtaatcttatccaccaatttcacttaactaatgggagctggaatttgagtgtagtgcttacattcttgcccaaatgtttgactgcatcgatttatgttaccaggcaggagtttgacataaacatcctgtattaggtttgctgcatggcatgtttacagaaactattcagctaaccaaattttcctcttaatgcaggtaattctagtgttgagggtctgaggagctgaaactagcacgggtaccctggcagcatgcggtggctggctctctcggtagacatcttccgcaaagggatctccttgaacctgtactgccgggttattctgtaaattgcctccattattgctctactccaatcctgatcttctagtctctgaagtttgggattgaagatctggttgctggcattgctgtttgggtttctgtggttgcctggcaattctttcaaggagaacgggcaggagtactaatggtgtggcaaccggtggctcagacgagattccgcgtgtttaaacatgagaatggaatcgctgtgagagttatagcttgcttccagccatcccaagattgccaggtaatgtagaaacaagtgacctttttaaggcttgcttttctttgctctgaacaattctaacattgatttgatatgcttgttgcaggccgagtacttccgccatcttcttaagcccgtgacgtagttcgactccctcccttccatttgctgttgaatagaacctgtgctgctctaagtttttctgaagcaaaagtaaagcaggagaatttcctgttcatctcaattttctggtggtaagaatctctttttcatcatcatgtgtacctatctgttttcaattatgggtagattaataatcagtttttttttttttttgcaatttcagaagatcctgtttgctggttgtttcttgatgggggagaaggttaatccctggtgccattggtctaatcccccatggaccgagagctctgcaaacaatctccacccacccgatgttagcctcgacaacacaaattcagtggcgttgccaacatatctgaacagcgatggctacatttattctggagttgctgcatctatgccgtctattgcagcatcagttactgacagacctgtttcattctcttctagatttgtcacaacattggtacccagtgtaggcttatcaacagctgagacactgagaaagagacctctggttttctttcataatgtgaataataccttcactgtaggtcctctcctgagcaaggggacattggatacagttccagagctccaaggtagcaatgagaccaatgtaactgatgttggagcacaaaatactgagtgtatgcatgagaatactgaggagattgatgcactcctgtgttccgactcagatgaagggtgcttgaaagtgcaagaactcaacaacagagtcaggaaatacccaatgcagaatgacaccatgagtgtggagtcggtagcaagcgctggtgcttcccaaccagcaaagaaaagaagactaagctctggtaccgacagatctgtggttgacacagccagctcagcaaggcctgaccactccgttgatcagaaacatctcagccatgacgacgacgcacagtcgtgttgtattggtgaagtggaaagcgatcaccagtttgctctgagggaaggtgaagaagcagaaggtgatgatggccccgatgatcggaagcggagaagagagaggatccaagagactgttgctgcactcagaaagatagttcctggaggcattgccaaagatgccacagccgttcttgatgaagcgatatgctatctcaagtatctaaagctcaaggtcaagacactgggagctgtttccctctagctcctcgatcgatgacggttctgttctggttcctgaacccaatacctatccctctctccatatatacaagtaatgagctaaaactatagcagcaataaggtgaaatgaaactcagtcagttccattcggtgattctgaggactactggagtgaaagctcaatggtgctttgcttacaagggtccaatgatttgagtggttacaatgaagattcagtattgcagtatattactagtgaatcaccgaccactgcaccttcatccatccatccactgatggagagtactacctagcagcaagccggtgtcacatctttcttctgggtcagttcagtgcagtgcctcttggtaggcacctcctccctctcataaaaaaaggctctcatggcgttgatggcgcaataagtaaaacagggaggctaagctataaagatcttttttctcccctccattgtggtgtgatccaaagcaaaggaaggaaggaggaatgaatgaatgaagtccatgcaaagtgcagtgctggtggcctggtgctgcatgcgtcgatggctttttgacccccaaaggttgagagatgagatggcggggccgcgcccgaggttagttcgggctccttgtgtgtgtttgtatggtggcgtgtgtagctagcagagtgtgcgtgatggcgtcgtccctcgcgctttttctgcctttctactagtactatacatatatgctactgtatactgtactcctatgtatgaatactgcatgtgtttgtgtttgtgtttg</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0391700, RefSeq:Os03g0391700