Os03g0401200

From RiceWiki
Revision as of 12:42, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os03g0401200| Description = Similar to DnaJ homolog subfamily B member 4 (Heat shock 40 kDa protein 1 homolog) (Heat shock protein 40 homolog) (HS...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os03g0401200

Description

Similar to DnaJ homolog subfamily B member 4 (Heat shock 40 kDa protein 1 homolog) (Heat shock protein 40 homolog) (HSP40 homolog)

Version

NM_001056853.1 GI:115453434 GeneID:4333061

Length

3337 bp

Definition

Oryza sativa Japonica Group Os03g0401200, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:16844741..16848077

Sequence Coding Region

16845041..16847287

Expression

GEO Profiles:Os03g0401200

Genome Context

<gbrowseImage1> name=NC_008396:16844741..16848077 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:16844741..16848077 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggagtgcaataaggatgaggctcttagggcgaaggagattgcagagaggaagtttgaatcgaaggacctgcagggggccaagaagttcgccctgaaggcgcaggctctctttcctgggcttgagggcattgttcagatgatcaccaccttggatctctatcttgcttcagaggtgctaatttctggggagaaggattggtactctatcctttccgtggagtcttctgctgatgatgagactctaaagaagcagtacaggaagttggtccttcagctccatcctgacaagaacaagtcggtgggtgctgagggtgctttcaagatggtccaagaggcgtggactgtgctgtcggataaaacaaagagagctctgtatgaccaaaaaaggaaactaatggttctgaaacggaatacatctcaaacaaataaagcaagtgcagctcctggtgcatccaatggcttttataattttgcagccaatgctgctgcttccaaggtgacaagaggaaacaagcaaaaggcaggaccagcaacatcttcagtgcgccagcgcccaccccctccccctccccctccccgtcaggctcctgctccacctccagcaaagccacctacattttggacctcatgcaacaaatgcaagatgaattatgaatacctgaaagtgtatctaaatcacaatcttctctgccctacctgccgtgagccattcctagcacaagaggtaccaatgccacccaccgagagtgttcatgctgtacatgatccgaacatcagtggtgcaaatcaaaacacaaatggtagtagaaatttccaatggggtccgttctcaaggacagctggcgcagctagtgctaccgcatcatctgctgctgctgctcaagccgcgaatgtggttcatcacacatatgagaaagttaggagagagagggaggaggcacaagcagctgctagaagggaagaagctcttcggaggaagtacaatccaccaaaaaggcaagcgaatatctcagagaatcttaaccttggaacaggtggcaactcatctaagaagatgagaactatgggtaacgatattggaattggttcttcatccattctatcaggttcaggggccaattattttggagttccaggtggaaatatatcattttctaccaacagtggagcacatcattttcaaggtgttaatggtggattcagttggaaacccagacctcctactcgcatcagcttagtcaagaccttcacgcagtttgatgttagaggtattttgatggaaaaagcaaagagcgatttaaaggacaagctaaaggagatgcagactaaaagatcacaggttgctgctaatggaaaaaagaataagaaaaacatgtttaaagaaagtggtggggatgatgaatctcttgcatcagatgattctactgcacgtcaagctgcacatgttgatccagaggacaatgcttctgttaatagcacagatgctgatgatgaaaatgatgatcctttatcttataatgttcctgatcctgatttccatgacttcgataaggatcgtactgaagaatgttttcagagtgatcaaatttgggctacatatgatgatgaagatggtatgcctcgttattatgcatttattcagaaagttctctccttggagccattccagctcaaaattagctttctcacatcaaggacaaacagtgaatttggttctttgaactgggtctcgtctggcttcacaaagacatgtggtgatttccggatttgtagatatgaaacctgtgatatactcaacatgttctctcaccagattaaatgggagaaaggcccacgtggggttataaaaatttatccacagaaaggtaacatctgggctgtgtatcgaaattggtcccctgactgggatgaagatactccagataaagttctccatgcctatgatgtagttgaggtactggatgagtatgacgaggatcttggcatttctgtcattcccttggtcaaggttgctgggtttcgaacagtatttcagcgaaatcaggacctgaatgccatcaagaaaattcccaaagaagagatgtttaggttttcacatgaggtgcccttttataggatgtcaggggaagaagctccaaatgtccctaaagatagctatgagctcgacccagctgctatttctaaagaacttcttcaggagatcacagaaacagtggaatcgtcaaaggcaacttctgaatgctga</cdnaseq>

Protein Sequence

<aaseq>MECNKDEALRAKEIAERKFESKDLQGAKKFALKAQALFPGLEGI VQMITTLDLYLASEVLISGEKDWYSILSVESSADDETLKKQYRKLVLQLHPDKNKSVG AEGAFKMVQEAWTVLSDKTKRALYDQKRKLMVLKRNTSQTNKASAAPGASNGFYNFAA NAAASKVTRGNKQKAGPATSSVRQRPPPPPPPPRQAPAPPPAKPPTFWTSCNKCKMNY EYLKVYLNHNLLCPTCREPFLAQEVPMPPTESVHAVHDPNISGANQNTNGSRNFQWGP FSRTAGAASATASSAAAAQAANVVHHTYEKVRREREEAQAAARREEALRRKYNPPKRQ ANISENLNLGTGGNSSKKMRTMGNDIGIGSSSILSGSGANYFGVPGGNISFSTNSGAH HFQGVNGGFSWKPRPPTRISLVKTFTQFDVRGILMEKAKSDLKDKLKEMQTKRSQVAA NGKKNKKNMFKESGGDDESLASDDSTARQAAHVDPEDNASVNSTDADDENDDPLSYNV PDPDFHDFDKDRTEECFQSDQIWATYDDEDGMPRYYAFIQKVLSLEPFQLKISFLTSR TNSEFGSLNWVSSGFTKTCGDFRICRYETCDILNMFSHQIKWEKGPRGVIKIYPQKGN IWAVYRNWSPDWDEDTPDKVLHAYDVVEVLDEYDEDLGISVIPLVKVAGFRTVFQRNQ DLNAIKKIPKEEMFRFSHEVPFYRMSGEEAPNVPKDSYELDPAAISKELLQEITETVE SSKATSEC</aaseq>

Gene Sequence

<dnaseqindica>791..3037#agttatcctgacccctcctcgtcagtttgtccgcccgccgccgccgccgccgccgccgtcgatccccatccatcgcgcgcgcgagcgagcagggggcgccgtcgttcgtcctgctgcttccgccgcatcctggcgggcacatcctccgccaccgccgcccgcgccgatccccacccatcgcgcgcgcgcgcgagcgagcagggtcgccgtcgttcgtcctgctgcttccgccgcatccatcctggtgagcacatcctccgccaccgccgatccccatccatggcgcgcgcgagcgagcagggtcgccgtcgttcgtcctgctgctcccgccgcatccgttacgcacatcctctttcccatctctctctccccacgcactttttctcgaaattggcgttaaccctagctcctgttctagaaatctgccttaaccttagaaaatactgataacaagttgatggttcccaaaaagtttgggggttcagatcaactgaacccccccatgccacatgttagatccgccactgcatacgcttaatagttagttattggatacatttgtttcatttttgtaggtaaccgagagcatcacacgtgttagatccgccactgcatacgcttaatagttattggatacatttgtttcatttttgtaggtaaccgggagcatcacacgtgctcgctcaattcggattagaagaaacagctttgtggtactttggggttggactgttttgtgaatctgctgtgagggcttgtttttcttggtagcttttcgggatacgacggaatggagtgcaataaggatgaggctcttagggcgaaggagattgcagagaggaagtttgaatcgaaggacctgcagggggccaagaagttcgccctgaaggcgcaggctctctttcctgggcttgagggcattgttcagatgatcaccaccttggatctctatcttgcttcagaggtgctaatttctggggagaaggattggtactctatcctttccgtggagtcttctgctgatgatgagactctaaagaagcagtacaggaagttggtccttcagctccatcctgacaagaacaagtcggtgggtgctgagggtgctttcaagatggtccaagaggcgtggactgtgctgtcggataaaacaaagagagctctgtatgaccaaaaaaggaaactaatggttctgaaacggaatacatctcaaacaaataaagcaagtgcagctcctggtgcatccaatggcttttataattttgcagccaatgctgctgcttccaaggtgacaagaggaaacaagcaaaaggcaggaccagcaacatcttcagtgcgccagcgcccaccccctccccctccccctccccgtcaggctcctgctccacctccagcaaagccacctacattttggacctcatgcaacaaatgcaagatgaattatgaatacctgaaagtgtatctaaatcacaatcttctctgccctacctgccgtgagccattcctagcacaagaggtaccaatgccacccaccgagagtgttcatgctgtacatgatccgaacatcagtggtgcaaatcaaaacacaaatggtagtagaaatttccaatggggtccgttctcaaggacagctggcgcagctagtgctaccgcatcatctgctgctgctgctcaagccgcgaatgtggttcatcacacatatgagaaagttaggagagagagggaggaggcacaagcagctgctagaagggaagaagctcttcggaggaagtacaatccaccaaaaaggcaagcgaatatctcagagaatcttaaccttggaacaggtggcaactcatctaagaagatgagaactatgggtaacgatattggaattggttcttcatccattctatcaggttcaggggccaattattttggagttccaggtggaaatatatcattttctaccaacagtggagcacatcattttcaaggtgttaatggtggattcagttggaaacccagacctcctactcgcatcagcttagtcaagaccttcacgcagtttgatgttagaggtattttgatggaaaaagcaaagagcgatttaaaggacaagctaaaggagatgcagactaaaagatcacaggttgctgctaatggaaaaaagaataagaaaaacatgtttaaagaaagtggtggggatgatgaatctcttgcatcagatgattctactgcacgtcaagctgcacatgttgatccagaggacaatgcttctgttaatagcacagatgctgatgatgaaaatgatgatcctttatcttataatgttcctgatcctgatttccatgacttcgataaggatcgtactgaagaatgttttcagagtgatcaaatttgggctacatatgatgatgaagatggtatgcctcgttattatgcatttattcagaaagttctctccttggagccattccagctcaaaattagctttctcacatcaaggacaaacagtgaatttggttctttgaactgggtctcgtctggcttcacaaagacatgtggtgatttccggatttgtagatatgaaacctgtgatatactcaacatgttctctcaccagattaaatgggagaaaggcccacgtggggttataaaaatttatccacagaaaggtaacatctgggctgtgtatcgaaattggtcccctgactgggatgaagatactccagataaagttctccatgcctatgatgtagttgaggtactggatgagtatgacgaggatcttggcatttctgtcattcccttggtcaaggttgctgggtttcgaacagtatttcagcgaaatcaggacctgaatgccatcaagaaaattcccaaagaagagatgtttaggttttcacatgaggtgcccttttataggatgtcaggggaagaagctccaaatgtccctaaagatagctatgagctcgacccagctgctatttctaaagaacttcttcaggagatcacagaaacagtggaatcgtcaaaggcaacttctgaatgctgagtaaaacagttgattgcttccaagatgcctctgttcacctcccattttgaagctataaatatgtagacaacgctaggttctatagtttcctgccttttattacttttgagttttgaccattacctttgcgcactaggatagtttgagctaatcattcaggggaatagggggatagcttctgttgtaactgtggggtgttctgacatgaatttgtcgttataactatactattaagcaactctagaagatgaagtactaattagaagctcatgtggcagtttgtcagtggaagcttttagg</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0401200, RefSeq:Os03g0401200