Os03g0563400

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Revision as of 12:45, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os03g0563400| Description = The start codon is not identified.| Version = NM_001057029.2 GI:297601187 GeneID:4333260| Length = 3146 bp| Definit...")
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Gene Name

Os03g0563400

Description

The start codon is not identified.

Version

NM_001057029.2 GI:297601187 GeneID:4333260

Length

3146 bp

Definition

Oryza sativa Japonica Group Os03g0563400, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:21016671..21019816

Sequence Coding Region

21017254..21019237,21019584..21019597

Expression

GEO Profiles:Os03g0563400

Genome Context

<gbrowseImage1> name=NC_008396:21016671..21019816 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:21016671..21019816 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>attcatattaatttggctgtttgtagcagattgaatgttaattttttaatattgtcacaagcaggcttattaaacatgtctacacacaattcagaaagttcaactggcaatagttctagtcatgaattatctttacaaccacgtaaaagagcaaaggtgtgggaacattttgagcaggagcttgttatggtagatggtgtccccaaagcacagtgcaaatattgtcggttaatgttgacagcaactagaaaatcaggaactagtcatctcataaaccatgtttgcgactcttgtccactagttgaggttgaagttagaaataggttcatagcaattgctcggaaacaacccgtggaaaattttgtgttttatcctagaaggagtgaagaattgatgataaaatttttcatccatgacgagataccatttcgaaaaatcgaagatccttactttgctgagtggatggagtccatgcaaccaacctttaaagttgttggtcgccaaacaattcgtgataagatttacacctgttacattaggatgaaacaagaactgcatgatgaattacaaaatattgattcacgtgtgtgcctaacatcagatatgtggacctcaaatcaaaacttaagatatatggttgtcacggcacattatattgatgcagaattcagtctgaaaaagaaaatcataagcttgaagcctgtgaagtatccacatactagctttgctatagaagaagccatgatgaggtgtttgactgattggggcttgaggggcaaactatttactttaactttggataatgctagtaataacacggctgcttgtgaggaaatggtgaaaaatcagaagaatgagttgttatttgaaggtagacattttcatgttaggtgctgcgcacacatcctcaatttattggttcaagatggaatgaggttaattcgtggggcaatacataagatacatgagctcttgaaatacatagaaaattcagcctcacgtatccaagcgttcaattcaattgccaacagttcatgcctttgttcaaaatttggtttaactgttgatgtacctaaccgttggaacacaactttcaaaatggttttagaagcattggtctatagagctgtccttaatagttatgccaatgaaaatggtgaggttgcaccatctgacgaagagtggctgactgctgaatcaatttgtgagtttcttaaagcctttgaagaggctactagacttgtgtcagctgacaggaaaccaacagcacactcattcttgcacttggttctctgcattcgccatgctttaagtgattttgattcgcaaacaactagtattttgactcaattggctagtgctatgcatatgaagtttgctaagtattgggatgaaaaattgccaaacaattttaatttggcacttgtcattagcactgtcttagatccaagaagaaaacgagattatttggaattcttttatgccaaggtgtctcccaatatgaatgaagctgaaactaaagtggattctgttatagagtggatgaagtcttactttagagtatatgaaggaattgcaaggagaaggggtgtatcctgcctatcacattctgggcaaggagaagctagtggtgtaggctcgccagttctaggcaaaagaaaacttgaccaagagtttgctattttcaagtcaaaccgaacacgattacataagtctgagattgagacatatctagaagaagtttgtgaggatgatagtaaagatttcgatgttttggcttggtggaagagaaatgctaaaaggtttcctgtactggcaattatgacttgggattttctagcaattccactcagcattgtgccttcggaatcagcttttagttgtggaggaaggatacttggagacacaagaagttccttgacaccggatatgcttgaggcactagtttgtgctaaagattggttatttaaaccgaagaaacaagatcaaagcacctga</cdnaseq>

Protein Sequence

<aaseq>IHINLAVCSRLNVNFLILSQAGLLNMSTHNSESSTGNSSSHELS LQPRKRAKVWEHFEQELVMVDGVPKAQCKYCRLMLTATRKSGTSHLINHVCDSCPLVE VEVRNRFIAIARKQPVENFVFYPRRSEELMIKFFIHDEIPFRKIEDPYFAEWMESMQP TFKVVGRQTIRDKIYTCYIRMKQELHDELQNIDSRVCLTSDMWTSNQNLRYMVVTAHY IDAEFSLKKKIISLKPVKYPHTSFAIEEAMMRCLTDWGLRGKLFTLTLDNASNNTAAC EEMVKNQKNELLFEGRHFHVRCCAHILNLLVQDGMRLIRGAIHKIHELLKYIENSASR IQAFNSIANSSCLCSKFGLTVDVPNRWNTTFKMVLEALVYRAVLNSYANENGEVAPSD EEWLTAESICEFLKAFEEATRLVSADRKPTAHSFLHLVLCIRHALSDFDSQTTSILTQ LASAMHMKFAKYWDEKLPNNFNLALVISTVLDPRRKRDYLEFFYAKVSPNMNEAETKV DSVIEWMKSYFRVYEGIARRRGVSCLSHSGQGEASGVGSPVLGKRKLDQEFAIFKSNR TRLHKSEIETYLEEVCEDDSKDFDVLAWWKRNAKRFPVLAIMTWDFLAIPLSIVPSES AFSCGGRILGDTRSSLTPDMLEALVCAKDWLFKPKKQDQST</aaseq>

Gene Sequence

<dnaseqindica>584..2567#2914..2927#tggactgaatccacacgctaactcatcctcctcctcgcgtcctccgctcctcctcctccgccgccgctgccaccattgccaccgacggcgtcgctgctgctgctgctcctcaccactccgtcctcactgcaaacggctgcggccccaccggctcccgctcgtcctccgcttcagcgtcatctcccggcgtgctccgcgcctccgccagatcacgatctcctcttcatcggcgccaagaagttgctgctgctcgccacttcgacctggctgcaagcggctgcagctccactggctcccggcctcccgctcgtcctccgctccggcgtcatctcccggcaccgctccgccagatcgccatctccgctccgtcggcgccaagaagctgctgctctcctccatgcaagatctgttgccgtgtgtccctgccccggcccccacaagatctagcaatactctctcccttcaagatccagcaagtattctctccttttcaggacttatgacttatgcctggtaatactgatttggaaatacctcagattgatagtagattctacaagattacaaatatgggttgaattagattcatattaatttggctgtttgtagcagattgaatgttaattttttaatattgtcacaagcaggcttattaaacatgtctacacacaattcagaaagttcaactggcaatagttctagtcatgaattatctttacaaccacgtaaaagagcaaaggtgtgggaacattttgagcaggagcttgttatggtagatggtgtccccaaagcacagtgcaaatattgtcggttaatgttgacagcaactagaaaatcaggaactagtcatctcataaaccatgtttgcgactcttgtccactagttgaggttgaagttagaaataggttcatagcaattgctcggaaacaacccgtggaaaattttgtgttttatcctagaaggagtgaagaattgatgataaaatttttcatccatgacgagataccatttcgaaaaatcgaagatccttactttgctgagtggatggagtccatgcaaccaacctttaaagttgttggtcgccaaacaattcgtgataagatttacacctgttacattaggatgaaacaagaactgcatgatgaattacaaaatattgattcacgtgtgtgcctaacatcagatatgtggacctcaaatcaaaacttaagatatatggttgtcacggcacattatattgatgcagaattcagtctgaaaaagaaaatcataagcttgaagcctgtgaagtatccacatactagctttgctatagaagaagccatgatgaggtgtttgactgattggggcttgaggggcaaactatttactttaactttggataatgctagtaataacacggctgcttgtgaggaaatggtgaaaaatcagaagaatgagttgttatttgaaggtagacattttcatgttaggtgctgcgcacacatcctcaatttattggttcaagatggaatgaggttaattcgtggggcaatacataagatacatgagctcttgaaatacatagaaaattcagcctcacgtatccaagcgttcaattcaattgccaacagttcatgcctttgttcaaaatttggtttaactgttgatgtacctaaccgttggaacacaactttcaaaatggttttagaagcattggtctatagagctgtccttaatagttatgccaatgaaaatggtgaggttgcaccatctgacgaagagtggctgactgctgaatcaatttgtgagtttcttaaagcctttgaagaggctactagacttgtgtcagctgacaggaaaccaacagcacactcattcttgcacttggttctctgcattcgccatgctttaagtgattttgattcgcaaacaactagtattttgactcaattggctagtgctatgcatatgaagtttgctaagtattgggatgaaaaattgccaaacaattttaatttggcacttgtcattagcactgtcttagatccaagaagaaaacgagattatttggaattcttttatgccaaggtgtctcccaatatgaatgaagctgaaactaaagtggattctgttatagagtggatgaagtcttactttagagtatatgaaggaattgcaaggagaaggggtgtatcctgcctatcacattctgggcaaggagaagctagtggtgtaggctcgccagttctaggcaaaagaaaacttgaccaagagtttgctattttcaagtcaaaccgaacacgattacataagtctgagattgagacatatctagaagaagtttgtgaggatgatagtaaagatttcgatgttttggcttggtggaagagaaatgctaaaaggtttcctgtactggcaattatgacttgggattttctagcaattccactcagcattgtgccttcggaatcagcttttagttgtggaggaaggatacttggagacacaagaagttccttgacaccggatatgcttgaggcactagtttgtgctaaagattggttatttaaaccgaagaaacaaggtaattaaatgtatatttttttgcctatctactactagctagactaacaaagtaacattgtttctttcttagcttgtaagaaaacttggtctctatagtttgcatgattattctcaaattaacttgaaaactgtaatgcagttggtagctgatgcttgtatgtgtggccatatcatttatttttgtacgctaacttattctaaagtatgatggtctgaaaaggtagtagttttttgtatgatggattttagctctaagttgatattttacacttaaattttgtggtatcagtattattgaatctttactgtaaccttttggttctactctcttgatgctattacagatcaaagcacctgagatggatgagcttcaagagagtagtaccactttttggttgtggggataaccacatcaagcaatcacatcagaggatcatggcttgcatgctaactgatttgagctgcggaagtagcatgcttctacatgttaaactaactattcgtgtaatattgacaaagtgttgtacaaatttcctgactaatttcagttgtgcctgtgttactgtgtggctgtgtc</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0563400, RefSeq:Os03g0563400