Os03g0645000

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Revision as of 12:50, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os03g0645000| Description = Beta-expansin| Version = NM_001057297.1 GI:115454322 GeneID:4333563| Length = 2937 bp| Definition = Oryza sativa Ja...")
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Gene Name

Os03g0645000

Description

Beta-expansin

Version

NM_001057297.1 GI:115454322 GeneID:4333563

Length

2937 bp

Definition

Oryza sativa Japonica Group Os03g0645000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:25655464..25658400

Sequence Coding Region

25655659..25655681,25656928..25657073,25657177..25657289,25657377..25657597,25657787..25658225

Expression

GEO Profiles:Os03g0645000

Genome Context

<gbrowseImage1> name=NC_008396:25655464..25658400 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:25655464..25658400 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcggccttcgagccccatcggcttcagctcttgtacttcattgccattacagtgctcgcttcggtgttccaaccttgcacgtccattgagctccaccgtgagctctctggctggtcgaatggcattgctacatggtatggcgatcctaatggtgcaggaagtgaaggcggtgcatgtgggtaccagtatgctgttgaccagccaccgttctcatccaggattgctgctggtagcccctacatctatgactctggcaagggatgtggttcgtgctaccgggtggtgtgtgctggtaatgaagcttgctctggtatccctgtaaccgttgtcatcactgaccaggggcctggtggcccatgcttggaagagctagtcgatggtcaatgcatgaatgaagcagctcactttgacatgagcgggacagcattcggtgccatggcgaggcctggccaggctgatcaactccgtggtgctggcctcctccaaattcagtacacccgtgtggagtgtgaatggactggagtagggctaacctttgtcgtggactctggctccaacccgaactacctggccctgctggtggagtacgatgacaacgacagtgaccttgcggctgtcgacatcatgccgattggtgctggtgcttcggggtcatggattccgatgcagcagtcatggggcgcagtgtggaggctcaactccggctccgccctgcagggcccgttctccgtccgcctgacgttcagctccggccagatgtttgttgccagcaacgccataccggcagggtggaaccccggcatggcgtaccagcccggcggagtggcgatgagggttaggggaagaaatggtggtcgccggggctacgaggccgtcgggatgctgggtggcttgtgtcaccttctactgctgctgttgttaatgttgttcgagttgtga</cdnaseq>

Protein Sequence

<aaseq>MAAFEPHRLQLLYFIAITVLASVFQPCTSIELHRELSGWSNGIA TWYGDPNGAGSEGGACGYQYAVDQPPFSSRIAAGSPYIYDSGKGCGSCYRVVCAGNEA CSGIPVTVVITDQGPGGPCLEELVDGQCMNEAAHFDMSGTAFGAMARPGQADQLRGAG LLQIQYTRVECEWTGVGLTFVVDSGSNPNYLALLVEYDDNDSDLAAVDIMPIGAGASG SWIPMQQSWGAVWRLNSGSALQGPFSVRLTFSSGQMFVASNAIPAGWNPGMAYQPGGV AMRVRGRNGGRRGYEAVGMLGGLCHLLLLLLLMLFEL</aaseq>

Gene Sequence

<dnaseqindica>196..218#1465..1610#1714..1826#1914..2134#2324..2762#gcgacgaggggcgtgcgggtggcgagggacaaaagcggcggagggaagctggaggagcggacggccgttgcagttgcagttgcgtgcttgctgattcgagtcgttggctttattagctactgcaatgtgctgaactctgctgtgttcttgagtgggcaggtgaaggtggtggtggtggatccgcagcgcctgcgcatggcggccttcgagccccatcggtaagaggatgcagcacgatgccccccccaccccccaccccccccccccaaaaaaaaaagctactactactactactagcacaatgcatttttggtctacaagtctgaatgggtcagttattagctttcgagctatggccttgggttgttctacaactgattgtttacttaccaggaggcatttttttgttgcatggatggttggatccgctttattcctttgacatagtcactttaattggaagataaaagtatgtactgtatgttggctccaagcattgtattttgtctaggtgatactccctcctttttacaatgtaagtcattctagcatatatgtctagattcattaacatcaatatgaatatgggatagatatatatgtctagattcattaatatcaatatgaatgtgggaaatgctagaatgacttacattgtaaaacggaggaagtaatgcttgtattttttttctcaaacatttgctgttctgttggtagtcttcatgaatagtgtttcatatttcattttgtgtagtactgttagcgaataaaactttgtcatttctatctttctatttagaaaacgaactgaatataacatgatcggtatgcctttttcaatcaatggagtaatggcttactgtgccatttgctctttggacttaaacagtatgctctcgaaacttcttcaagacataattatttaaggttgggcatgtgtttcttttggttagtagctaggtgctatgtttttgggtaatggtgacaaatcgtaaagtagaaactaaaggttaatcagctgacaatggtcatcagtaattggaaattttctaacaccctcctttacatgtttgccataatccatgacaacaactttttgtaattcacggcacattgcccttcttgtctatcatctccttaaaatccattttttattctaacttcagaaaacagctgtaccacatttatggcattttcattttcttcagtggagtgtttttttaatgagaactcagtgaagtgttgttatgaaaacattctcaatgctgtgaattatgttctgaggcgcaattgaagccaaaacaataacctttcttgctgtcctgttcttcattacctccagcacaaaatatgcccattgaatacatatcatacaatctatacttgtgttgttgaccttgcaaaccaacagtgtgttagtccttatcagccataatgtgacagagtgcagcacatggcttccaggcttcagctcttgtacttcattgccattacagtgctcgcttcggtgttccaaccttgcacgtccattgagctccaccgtgagctctctggctggtcgaatggcattgctacatggtatggcgatcctaatggtgcaggaagtgaaggtatggtagataccacaaaaaataaaatctgtgaatatacgcactctactcaaagcggcttgtggtgcgaaaatgtgatgtctcatgcataaatttgttgtaggcggtgcatgtgggtaccagtatgctgttgaccagccaccgttctcatccaggattgctgctggtagcccctacatctatgactctggcaagggatgtggttcgtgctaccgggtgtgtatccattgaccattagcagctgaagctatgctcattcatgcatgtctgccatttgacatttggaaataactgatttatcaggtggtgtgtgctggtaatgaagcttgctctggtatccctgtaaccgttgtcatcactgaccaggggcctggtggcccatgcttggaagagctagtcgatggtcaatgcatgaatgaagcagctcactttgacatgagcgggacagcattcggtgccatggcgaggcctggccaggctgatcaactccgtggtgctggcctcctccaaattcagtacacccggtacacatgaataatggatcatcatatatagtacacaggcactcagctacactattattcttggctgctgcaacggccaagtacatatgacacttcacgcagatatgcaaactgtctggttttcgctatgtttctcatcatgtaacaaacagtatgtttaatcttttctgttacttttgtggtgtacagtgtggagtgtgaatggactggagtagggctaacctttgtcgtggactctggctccaacccgaactacctggccctgctggtggagtacgatgacaacgacagtgaccttgcggctgtcgacatcatgccgattggtgctggtgcttcggggtcatggattccgatgcagcagtcatggggcgcagtgtggaggctcaactccggctccgccctgcagggcccgttctccgtccgcctgacgttcagctccggccagatgtttgttgccagcaacgccataccggcagggtggaaccccggcatggcgtaccagcccggcggagtggcgatgagggttaggggaagaaatggtggtcgccggggctacgaggccgtcgggatgctgggtggcttgtgtcaccttctactgctgctgttgttaatgttgttcgagttgtgacttgtgatgcactaaaaacatgtgctgaaactttggtgctttctgtaggactagccatggttggattagcctggccgtgctctcttgtagctcagatgatgtattgcccgcagccttggagacattatcaatttgtcatgtgctggattaatggaataagtagtattccactgtt</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0645000, RefSeq:Os03g0645000