Os03g0690600

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Revision as of 12:53, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os03g0690600| Description = Similar to SCARECROW-like protein| Version = NM_001057487.1 GI:115454702 GeneID:4333775| Length = 4861 bp| Definiti...")
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Gene Name

Os03g0690600

Description

Similar to SCARECROW-like protein

Version

NM_001057487.1 GI:115454702 GeneID:4333775

Length

4861 bp

Definition

Oryza sativa Japonica Group Os03g0690600, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:28348323..28353183

Sequence Coding Region

28350376..28352571

Expression

GEO Profiles:Os03g0690600

Genome Context

<gbrowseImage1> name=NC_008396:28348323..28353183 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:28348323..28353183 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgggtctggacaacaatttcggggagctatctggcatgttctgtggcttgtcctatgatggctacacggatcacggcagccagagcgattacttcaggttcgccgacccgcagccggcgatcgtgccccagatggacgccggacccagctccgccgcttcctccacggcgtcgagggccgccgtcagctcggggaccgacaacccagaggactgggagttcatctcggacgagtcgctcaactatatcagccgcatgctcatggaggaggacattgatgagaaggtcagcatgtaccaggaggagtccgcggcgctccgcgctgctgcgaagccattctatgacattcttgggcacaagttcccgccctcccctgaccgccagctggtagcttggcccctcgacagcccgagtgagagtagcactagcagctatccacactccttggctagttctgttactagcagcaacattagtggtgcggtcgatagcagccaacgccgttatgttggacacagtgagtatcggagcttgtctggtcattcttctcaaccgccggttggcccatcaagtgatgttcgcaacgctatggagacactagaagatcctttgattagtaatggcaggatccctgagtatttgtttgagagctttccaacatgggatttcaggagaggtgttgacgaggcacagaagtttctcccgggtagcgataaggtagtgattgatttagaggctggtggtgttgcaaaacgtcaagaagcagggaaagctatttctctgaatgtcagcaaggcagaggttttgaaggtaaagaaaaacagacagagtgaagaccttgacgtgatggaaggacggaatagtaaacagtctgcattttgttctgatgaacctgattggattgagatgtttgatgttctgcttcgtcaaactgagaagaaggcaactgatcttcgaaaaatgatgcgttttgaggcttccaagaattctcaagttgctcagccaaaaggaccaagtgggacccgatcacggggacggaagccaactaagaaggatgtggtggaccttaggacgctactcatccactgtgctcaggcagtggcagctgatgaccgccggactgctaatgagttgttaaagcaaataaggcagcatgccaagccaaatggagatggctcccagagattggcgtattgctttgcagatggtcttgaggctcgcttggctggaacagggagccaactttaccataaacttgtggcaaaacggacaacagcctctgacatgctcaaggcataccatctttaccttgcagcatgcccattcaagaggctctcacattttctttcaaatcaaacaattttgagtttgacaaaaaatgcatcaaaggtgcatatcattgactttggcatttacttcggcttccaatggccgtgcctgattagacgtctcttcaagagggaaggtgggccaccaaagctgcgtatcacagggattgatgtacctcagccaggtttccgcccaactgagcgcatcgaagagacagggcagaggcttgcagaatatgctgagaagattggtgtcccttttgagtaccaaggcattgcatcaaagtgggaaacaatctgtgttgaggatctcaatattaagaaagatgaagtagtgattgttaattgcttgtatcggttcagaaatcttattgatgaaacagttgccatagacagtcctaggaatagggtgctcaataccataaggcaagtgaacccagcaatttttatccatggcattgtgaatgggtcgtacagcgttcccttcttcatcacacggttccgtgaggcattatttcatttctctgcattatttgacatgctcgagacaactgtgccacgggatgatgcccagcgtgcactaattgagagagatctatttggccgggaagcactcaatgtgattgcatgtgaaggctcagacagggtcgagagaccggagacatacaaacagtggcaagtgaggaatctgagagctggatttgtccagtctccattaaaccaagacattgtgctgaaagccaaggacaaagtgaaagacatctatcacaaagactttgtcattgatgaagacagtgaatggctccttcaagggtggaaaggaaggataatctatgccatatctacatggaagcctaataacaattag</cdnaseq>

Protein Sequence

<aaseq>MGLDNNFGELSGMFCGLSYDGYTDHGSQSDYFRFADPQPAIVPQ MDAGPSSAASSTASRAAVSSGTDNPEDWEFISDESLNYISRMLMEEDIDEKVSMYQEE SAALRAAAKPFYDILGHKFPPSPDRQLVAWPLDSPSESSTSSYPHSLASSVTSSNISG AVDSSQRRYVGHSEYRSLSGHSSQPPVGPSSDVRNAMETLEDPLISNGRIPEYLFESF PTWDFRRGVDEAQKFLPGSDKVVIDLEAGGVAKRQEAGKAISLNVSKAEVLKVKKNRQ SEDLDVMEGRNSKQSAFCSDEPDWIEMFDVLLRQTEKKATDLRKMMRFEASKNSQVAQ PKGPSGTRSRGRKPTKKDVVDLRTLLIHCAQAVAADDRRTANELLKQIRQHAKPNGDG SQRLAYCFADGLEARLAGTGSQLYHKLVAKRTTASDMLKAYHLYLAACPFKRLSHFLS NQTILSLTKNASKVHIIDFGIYFGFQWPCLIRRLFKREGGPPKLRITGIDVPQPGFRP TERIEETGQRLAEYAEKIGVPFEYQGIASKWETICVEDLNIKKDEVVIVNCLYRFRNL IDETVAIDSPRNRVLNTIRQVNPAIFIHGIVNGSYSVPFFITRFREALFHFSALFDML ETTVPRDDAQRALIERDLFGREALNVIACEGSDRVERPETYKQWQVRNLRAGFVQSPL NQDIVLKAKDKVKDIYHKDFVIDEDSEWLLQGWKGRIIYAISTWKPNNN</aaseq>

Gene Sequence

<dnaseqindica>613..2808#cccgtctctcttccccgtgttcctcctccaccgctgtagctgtacccctcctcctcctcctcctctcctcgatccgcacgcaccgccatctccgatccgcagcagcagcagcagcagcagccgcgaggccccggagccacgcgcatctcgctcgccgccggcgagaaggccccggtaaccggtgggccgcagagggggaaaaggttttggagggagcgacgccgcgtgcgtccccgtctcggctgggaccgaaccggaggtgaggtgctcctcatccctctctctctctcgtccgctgctccatttgatgagagggttgggttgggttggtgtggtggagagattgggaatccatctggggctccggcttgctgctgatttccccttttctctccgatttgtttgatgcgtggtgtggtatcaatagctgcttgtgttgtagttttaattaaaaacagtttagcggtttgtttttccgatacaaattcgtgtggttcagctgattttttaccacttgtggttttgatcagctgaaaaccaaaagttgagtatactgagcttgtcgctaaccatgaaaaggtgaagcaggtgtgccatttttggaggctatcgatgggtctggacaacaatttcggggagctatctggcatgttctgtggcttgtcctatgatggctacacggatcacggcagccagagcgattacttcaggttcgccgacccgcagccggcgatcgtgccccagatggacgccggacccagctccgccgcttcctccacggcgtcgagggccgccgtcagctcggggaccgacaacccagaggactgggagttcatctcggacgagtcgctcaactatatcagccgcatgctcatggaggaggacattgatgagaaggtcagcatgtaccaggaggagtccgcggcgctccgcgctgctgcgaagccattctatgacattcttgggcacaagttcccgccctcccctgaccgccagctggtagcttggcccctcgacagcccgagtgagagtagcactagcagctatccacactccttggctagttctgttactagcagcaacattagtggtgcggtcgatagcagccaacgccgttatgttggacacagtgagtatcggagcttgtctggtcattcttctcaaccgccggttggcccatcaagtgatgttcgcaacgctatggagacactagaagatcctttgattagtaatggcaggatccctgagtatttgtttgagagctttccaacatgggatttcaggagaggtgttgacgaggcacagaagtttctcccgggtagcgataaggtagtgattgatttagaggctggtggtgttgcaaaacgtcaagaagcagggaaagctatttctctgaatgtcagcaaggcagaggttttgaaggtaaagaaaaacagacagagtgaagaccttgacgtgatggaaggacggaatagtaaacagtctgcattttgttctgatgaacctgattggattgagatgtttgatgttctgcttcgtcaaactgagaagaaggcaactgatcttcgaaaaatgatgcgttttgaggcttccaagaattctcaagttgctcagccaaaaggaccaagtgggacccgatcacggggacggaagccaactaagaaggatgtggtggaccttaggacgctactcatccactgtgctcaggcagtggcagctgatgaccgccggactgctaatgagttgttaaagcaaataaggcagcatgccaagccaaatggagatggctcccagagattggcgtattgctttgcagatggtcttgaggctcgcttggctggaacagggagccaactttaccataaacttgtggcaaaacggacaacagcctctgacatgctcaaggcataccatctttaccttgcagcatgcccattcaagaggctctcacattttctttcaaatcaaacaattttgagtttgacaaaaaatgcatcaaaggtgcatatcattgactttggcatttacttcggcttccaatggccgtgcctgattagacgtctcttcaagagggaaggtgggccaccaaagctgcgtatcacagggattgatgtacctcagccaggtttccgcccaactgagcgcatcgaagagacagggcagaggcttgcagaatatgctgagaagattggtgtcccttttgagtaccaaggcattgcatcaaagtgggaaacaatctgtgttgaggatctcaatattaagaaagatgaagtagtgattgttaattgcttgtatcggttcagaaatcttattgatgaaacagttgccatagacagtcctaggaatagggtgctcaataccataaggcaagtgaacccagcaatttttatccatggcattgtgaatgggtcgtacagcgttcccttcttcatcacacggttccgtgaggcattatttcatttctctgcattatttgacatgctcgagacaactgtgccacgggatgatgcccagcgtgcactaattgagagagatctatttggccgggaagcactcaatgtgattgcatgtgaaggctcagacagggtcgagagaccggagacatacaaacagtggcaagtgaggaatctgagagctggatttgtccagtctccattaaaccaagacattgtgctgaaagccaaggacaaagtgaaagacatctatcacaaagactttgtcattgatgaagacagtgaatggctccttcaagggtggaaaggaaggataatctatgccatatctacatggaagcctaataacaattagggtatggtctgtgagctgtgcctggttgcccgttagcactagcaattaacgaagaaaagtaccttgcattgggctacatgcgtatgtacaggtctgcttattgttttccaaagtactgctgctcagttcagtgattttcacatttgtccactattagttcagttcagtacttctgttcttgatttggcctttgagttgataatttttttcaagtttagaacaagtaggacatatgtcacaatgggttaattaataagcataactatcagcatcaaagtggcatatgtcagaagacaagtgtactttttacatgctatgcattccatgcgttggtgcagaccgcagagcagtttctgccttgcttttaccatatctgtatctatacttatatataacatgaaaagcactagtttcaaacttttaccatacatgaaaggttgctacaagtaatcctagcaattggttggtttgatcattttgtattgaagatggatccttcatcctttcccccaacccaaatctctccaaaacaattaatttgtacttaatatatactctttgctctgtccagatcttcatgtgcacagacagtcctaaacgtccgatctgatgaatctaatggatgatatccattccatggtcctgccttccacagataacttaataacaatagtcgtctacactaatacctgataaattaattaccttaatggcctatattcctcctaatcctgctctggaccaaaaaaaatcccagcctcctgagaatactctgcagctgcatgggtgccaaagtccaatgcctgtaacatcataggtatgcatttgctattttgttttcagtttcctttgctctcttttcttttagggagttggtaaagtatggaattgtgattatctactgcaggcatgaattaatttgacttggatacaatggacatatatcagcacatctatgcattacgaccttctgatcctcatgaagccttggttttaaccgttgccgtacgagtgcttagtgcttgcccctgtttagcctttttatattttcccttttccagggatgtaatttacaggttccttttatttggattgcattgtactaattacataaatgttttaacgttttttggcccaactattttctaccatccatccttactgagatttactgctcactttctgattgctgaaaattcgaagaagtggtaaatttctgttttgctcacagtgaaagcttgggccttccacttcatttcaagatggatttctatggaaatactacagtgaaagattgaacagaagccgattgttgctttctcattttgttctcatgcaaaaccaggtaaaattttgactgctttaccttttccaaataatagtatctcgataatggtatattcataaatatagattttctgtgcatactttatgctataagagacagcatgactagcggtatcttctgaattattcacacacagtggttactttttttttttttgcttaaatgaatagcatctcaatcgcctagatttgtgcataaaatgctgtttaggaccaactgattgatcaggcaatgctcaattatgtggtttctaagcagtttgatgccatgataaaaaatgtaccataggtttgttacaaatacatgtcgaaacatctagtgttagtaaatttctgcgacaaacagatggtattaaattttgcttattctaatttcgattttctagggtcactcactggcagatgccaaaccttctcgattgtgtaaaattcgttctatacggagtataacccaccagggttatggaaatcgcggcctgacctagtgaaggaccgtgatgatctctttcaatgattcctccagcactatcagcttttaaagataaaatcagtagtgcctttttagtttcagtagtctctgttttagtaactttttatttcatttataggtttacaacatttcgatctgttttgttggggatatatgtggatgtgtacttttttttctttaaaaaaaaagaattttaggccacctcaatttaaagct</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0690600, RefSeq:Os03g0690600