Os03g0788800

From RiceWiki
Revision as of 13:03, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os03g0788800| Description = Zinc finger, RING-type domain containing protein| Version = NM_001058041.1 GI:115455810 GeneID:4334369| Length = 381...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os03g0788800

Description

Zinc finger, RING-type domain containing protein

Version

NM_001058041.1 GI:115455810 GeneID:4334369

Length

3818 bp

Definition

Oryza sativa Japonica Group Os03g0788800, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:33634198..33638015

Sequence Coding Region

33634692..33634992,33635077..33635184,33635274..33635641,33635753..33635852,33635926..33635988
,33637186..33637232,33637331..33637462

Expression

GEO Profiles:Os03g0788800

Genome Context

<gbrowseImage1> name=NC_008396:33634198..33638015 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:33634198..33638015 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggatgagaaggtgaagatggagagcaagctgtcctccgcggcggcgttcgtggagggaggtgtgcaggacgcctgcgacgacgcctgcagcatctgcctcgaggccttctgcgacaacgacccctccacggtgacgagttgcaagcatgagtaccatctgcagtgcattcttgaatggtgccagagaagctctcagtgtcccatgtgttggcagcctatcagcatgaaggatcctatgagccaagaactacttgaggctgttgagcaagagaggaacattcgagctaaccgtttgaacactgccgctgtttttcaccatccagtattgggtgattttgaggtccctgtaggagctgatgatgctgaacttgaggagcgcattatacaacacttggctgctgctgctgcaatgcgtaggtcacacagacatggtagaagagatggacatcgtagccgatctggatctcatagccgcccacaaatcgtggtgttttcaaggaatgaggctattcctggtggctccctgcatgcaagttcaggccaagatgaagaccatgaacaatcttctgacttaggttctgctcatccttttgctgctcttgctgctgtagaccaaggacatatgagtggtggttcgcagctatacgtgggtcattctgaccagggtgcttcaaatccatctctgcatgatgagagagcaatgagcaggacatctgaaaatcaatctgcacctgtcaatcaagatacagcaggaccatctgatttgcagtcattctctgacacgctgagatctcgcctacagtcagcttcgatgaagtataaagattctataacaaagagtacgcgtggatggaaggaaagatggttttctcggagtaacactatatcaggtcttggcactgaagtaaggagggaggtcaacgctgggattgctgcggtatctcgcatgatggaacggctagaaacaaaggacgatactggaccatctgctgttcctgcagctagtgcttgctctccttcagacgcaaataatcaaaggacggtatcccccaaccatgctgctgttgtaaatgaaacttcttccacgacttgtgcgtcaggatctggctctcaatga</cdnaseq>

Protein Sequence

<aaseq>MDEKVKMESKLSSAAAFVEGGVQDACDDACSICLEAFCDNDPST VTSCKHEYHLQCILEWCQRSSQCPMCWQPISMKDPMSQELLEAVEQERNIRANRLNTA AVFHHPVLGDFEVPVGADDAELEERIIQHLAAAAAMRRSHRHGRRDGHRSRSGSHSRP QIVVFSRNEAIPGGSLHASSGQDEDHEQSSDLGSAHPFAALAAVDQGHMSGGSQLYVG HSDQGASNPSLHDERAMSRTSENQSAPVNQDTAGPSDLQSFSDTLRSRLQSASMKYKD SITKSTRGWKERWFSRSNTISGLGTEVRREVNAGIAAVSRMMERLETKDDTGPSAVPA ASACSPSDANNQRTVSPNHAAVVNETSSTTCASGSGSQ</aaseq>

Gene Sequence

<dnaseqindica>3024..3324#2832..2939#2375..2742#2164..2263#2028..2090#784..830#554..685#acccgtcattggcgtgaggggaagggagagagcgggaggggggatttttatttaggattttcttttatctgtatttttttttattaagagaaagccttcccgactccgtctcctcctcccctcgtcgtcgtcgtcgtcgtcgtctcgccttcgccgccgaggcggaacaattccgcggggagttcgctgattaatccggccgaatcctgaaattccccttgagcaatcgggataaggtagcctcgcaatccatccgcctttcctttctggatagttttttttggtgtttttcttttgatttatccgtatcgttttggttggattggggacatgggggcggggcgatttcgtggtgtgtttatggtcatttcggtggatttcgtatcgtggatggggggattattgagcaagagactcctgtttcgatcgttgattggcttggtttggcttaatccgtggaattttttgctcatagaattcgttttttctttggtcatcaggcgtaggaatcttgcgcgggaagggctaatcgaatcggttgggctgtacggagatggatgagaaggtgaagatggagagcaagctgtcctccgcggcggcgttcgtggagggaggtgtgcaggacgcctgcgacgacgcctgcagcatctgcctcgaggccttctgcgacaacgacccctccacggtctgcatccgccgaggcgaaaattttggattcgatatgattgtgatcgagtcgctcatttgttttcttggtgtggatgttggcgttttctcttgcaggtgacgagttgcaagcatgagtaccatctgcagtgcattcttgaatggtaatgtttcctttctggcctattggaacgatattgttgtgtggtatttttctttttctgtacttctttgtggagctggtgatgcattgcaatcgatatagatgtaaattacggtaattgaatcatgcatattgcataatttattctaaatttaaggttgctcttgtttccacaaagcaaactatccgatatcaccatgactagtttgcttgtgtacctcagttttatatgatgcaatccctgattgtttgttttgtttctgtatcttcttttccacctagataaagtaaaataaacggccgtgcttttagctgcaaggtgataaaggaagttagtgtttgtctggcaattgtgactacacatcgatggttcaatttaactgtgctgtgggaactacatctaatttgctagggttgcaaaaaatatttgtttttaaggtgatggtgattatctgcttacactatttgaatctatgcttgttgtcgtgctgaaatgctgtcagtaaagtggaactaccacatgatttataagacgaaaatgggatcttacattccagaaacagatcatgtgttaggcatcgcaatgctcttcaaccatgatcgacttgtatatgaaggttaatgatgatcacctgcactttaagcagtgaataaccatacagaaattctccagcatatgagactcaataagccattaaggagcatatgatccacagactttcattatttcagcaataccagcctccatcaggtggggcaggggttgtaaggcttctgagctgcccagctggaagatttccttcatctgtgcaagcagtctagaacgatagctttgtcgtagtagttgtgagcgtgcagttcttctgcagtatgctcataaaactatcgttgcccttctggtgtctattatggactgatggggacatattctaaatatttattctatacgagcttgcagatactagagatgtacaaaaaaataatttatgtgcgatcaatctgaaatggaggatataatatattctcatgctttctttttatgaatacgaacgattttgagggtgagctcatgtgatcaaggataatgctgtatataaagtcaatatccaatcgatatgtagtgaaaatttgtcaaaatactgtactgtcctcgacaatattaatttttgatgtgtgcttctcactgtttgatatctaggtgccagagaagctctcagtgtcccatgtgttggcagcctatcagcatgaaggatcctatgaggtagaacttgcatcctgtgtatctccctagtgaaccaatttagtggttctcattttatatttgaactgtgcagccaagaactacttgaggctgttgagcaagagaggaacattcgagctaaccgtttgaacactgccgctgtttttcaccatccagtattgggtgattttgaggtgcagcacgttttattgctatcatttggatatttgcgatgattcctctttgcaccctggaggtaggcttaattcatacaactatattgatgtaccgttttctgatttcaggtccctgtaggagctgatgatgctgaacttgaggagcgcattatacaacacttggctgctgctgctgcaatgcgtaggtcacacagacatggtagaagagatggacatcgtagccgatctggatctcatagccgcccacaaatcgtggtgttttcaaggaatgaggctattcctggtggctccctgcatgcaagttcaggccaagatgaagaccatgaacaatcttctgacttaggttctgctcatccttttgctgctcttgctgctgtagaccaaggacatatgagtggtggttcgcagctatacgtgggtcattctgaccagggtgcttcaaatccatctctgcatgatgagagagcaatgagcaggtatttcctacaacttacggtatatatttgcatgctattcctatccaaattcaagaggtttactctctttgtatcttgatgttaatcaggacatctgaaaatcaatctgcacctgtcaatcaagatacagcaggaccatctgatttgcagtcattctctgacacgctgagatctcgcctacagtcagcttcgatgaagtaatatctcaaactcctgaaaatgccttacacattgaacgtatgcatcagtgtcttacttgtgggcattctttacaatgccaggtataaagattctataacaaagagtacgcgtggatggaaggaaagatggttttctcggagtaacactatatcaggtcttggcactgaagtaaggagggaggtcaacgctgggattgctgcggtatctcgcatgatggaacggctagaaacaaaggacgatactggaccatctgctgttcctgcagctagtgcttgctctccttcagacgcaaataatcaaaggacggtatcccccaaccatgctgctgttgtaaatgaaacttcttccacgacttgtgcgtcaggatctggctctcaatgagcccactccatgttcgttgaagaattggatacactgtgaagacaggtatatatgctcttcttgtgcacgagaaagctttaaaatttttaaggttttggggtggcaaaatgtcacaagaaacattttcctttagtagtttctgaaaccgctgtcaaattcacttggatcaggtccagagagaaacgccgtttgttcggagccacctgagatccagcgatgcttcatgatctttggtaggtctgtgtgcttcaggaagttcgctgaagcatttgcatccagatcgcgggacataagacttgtgcttgcggatgaacctttacatttttttaccttgtgtaatatatatgcaaggttgttatgaaatcataatcgctgtaaattgcaacataaagaatgtcggttgtgaaattcttgttgatatccctataaatgtagtgcaccaagggcgtcatgagtcatcagttcgtcgcttgacttgtgagtactcaatcttc</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0788800, RefSeq:Os03g0788800