Os03g0837900

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Revision as of 13:08, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os03g0837900| Description = Streptomyces cyclase/dehydrase family protein| Version = NM_001058369.1 GI:115456466 GeneID:4334714| Length = 5246 b...")
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Gene Name

Os03g0837900

Description

Streptomyces cyclase/dehydrase family protein

Version

NM_001058369.1 GI:115456466 GeneID:4334714

Length

5246 bp

Definition

Oryza sativa Japonica Group Os03g0837900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:36063620..36068865

Sequence Coding Region

36063630..36064030,36064130..36064250,36064639..36064724,36064947..36065343,36065453..36065553
,36065635..36065701,36066069..36066296,36067071..36067520,36067677..36067749
,36068395..36068639

Expression

GEO Profiles:Os03g0837900

Genome Context

<gbrowseImage1> name=NC_008396:36063620..36068865 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:36063620..36068865 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgacgtcgagggttctcgtctcctcctcctcctcctcctcctccgccgccgccgccgcattcctgccgcgaattccgaacccctgcgcgaaccctagccaccgcggcgcgcctccttgcggggcggcgctctggcggcaccattctggccgtgcggtcaccacggccgcggccgccgccgccaccggcgaccactggggcgctgagtaccacggcggcggaggcgggcgcggcgggaagagcgccgcgggccccggcgtgcagtgcgacgtggacgtggtgtcgtggcgcgagcggcgggtgttcgcgtccgtggcggtggccgccgacgtcgacaccgtgtggcgcgtcatcaccgactacgagcggctcgccgaattcatccccaacctcgttcacagtgggaggattccatgcccgcatcagggccgagtatggctcgagcagagggggctgcagcaagcgctttactggcatatcgaggcacgcgtcgtgttggatctcaaggaggttccggatgctgttaatggacgagagctccacttctccatggttgatggtgactttaagaagttcgaagggaaatggtccatcagatctggtccaaggtcatctagtgcaattttgttgtatgaagttaatgtgattccaagatttaatttcccagcaatatttcttgagaggatcataaggtcggatcttcctgtgaatcttggagcgttggcctgtagagctgaaaacatatatttaggaaaccaaagacatggaactgcaaaatttagtggtgcaggctccaggtttcataacttccgtaatgcaaccactgagaatgatgccattgctcctagtaagttcaaagaaacacctccttctggtcttggtggtgtgcttgcttcacctccttctgagttgaacagcaaatggggagtatatggaaatgtctgcagacttgataggccgtgtgtggtagatgagatccatcttcgaagatttgatggtctcctggaacatgaaggggctcacaggtttgtgtttgctagtatcactgtgaaagcgccagtgcgagaagtatggaatattctcactgcatatgagaagttgcctgaatttgtgccgaatctggctatcagtaggattattcgtcgggataataacaaggttcgcatactgcaggagggttgcaagggtctactttatatggtgcttcatgcccgtgttgttatggatcttcgcgagaaacttgaacgtgagataagctttgagcaagttgaaggtgatttctactcatttaaaggaaaatggcgcctagaacaacttggtgatcagcacaccttattgaagtatatggttgagactaagatgcataaagatacctttctctcagagtctatccttgaagaggtcatatatgaagatcttccatcaaacttatgtgcaatccgtgattatattgaaaaggcagaagctgagagcggtaactccacaagtagctctattgtagcatcaaatgcagatactattgctattgattatgcagaaggtaggcaatcagaacaagcatccacgtcatgttcttcgagtcctgtgaagcagagaccaaaagtcccaggccttcaaaaggacattgaggtcctcaaatctgaacttgagaaatttattgcaaaatatggtcaggatggcttcatgcctaagagaaaacaccttcgtttgcatggaagggtggatatcgagaaggcaataacacgcatgggtgggttcaggaagattgccagcataatgaatctttcactttcttataaaaaccggaaaccaagaggttattgggataatctggagaacttgcaagaagagatcaggcgattccagaagaattgggggatggaccctgcttatatgccaagtagaaagtcctttgagagagcaggacgttatgacattgctcgggcgttggaaaaatggggtggagtacacgaggtttctcgccttctttctcttgaactcagacgacctagaaggcgagccaactctgatgatgagagtaaggctggatcctcatatgccataacaaataaacacgcaagcaagccaaacaaaccaagcgtttctccggacaaacagaaatggctcctgaagctgaaggatctggatgctaattggattgagtactaa</cdnaseq>

Protein Sequence

<aaseq>MTSRVLVSSSSSSSSAAAAAFLPRIPNPCANPSHRGAPPCGAAL WRHHSGRAVTTAAAAAATGDHWGAEYHGGGGGRGGKSAAGPGVQCDVDVVSWRERRVF ASVAVAADVDTVWRVITDYERLAEFIPNLVHSGRIPCPHQGRVWLEQRGLQQALYWHI EARVVLDLKEVPDAVNGRELHFSMVDGDFKKFEGKWSIRSGPRSSSAILLYEVNVIPR FNFPAIFLERIIRSDLPVNLGALACRAENIYLGNQRHGTAKFSGAGSRFHNFRNATTE NDAIAPSKFKETPPSGLGGVLASPPSELNSKWGVYGNVCRLDRPCVVDEIHLRRFDGL LEHEGAHRFVFASITVKAPVREVWNILTAYEKLPEFVPNLAISRIIRRDNNKVRILQE GCKGLLYMVLHARVVMDLREKLEREISFEQVEGDFYSFKGKWRLEQLGDQHTLLKYMV ETKMHKDTFLSESILEEVIYEDLPSNLCAIRDYIEKAEAESGNSTSSSIVASNADTIA IDYAEGRQSEQASTSCSSSPVKQRPKVPGLQKDIEVLKSELEKFIAKYGQDGFMPKRK HLRLHGRVDIEKAITRMGGFRKIASIMNLSLSYKNRKPRGYWDNLENLQEEIRRFQKN WGMDPAYMPSRKSFERAGRYDIARALEKWGGVHEVSRLLSLELRRPRRRANSDDESKA GSSYAITNKHASKPNKPSVSPDKQKWLLKLKDLDANWIEY</aaseq>

Gene Sequence

<dnaseqindica>11..411#511..631#1020..1105#1328..1724#1834..1934#2016..2082#2450..2677#3452..3901#4058..4130#4776..5020#atgagcggcgatgacgtcgagggttctcgtctcctcctcctcctcctcctcctccgccgccgccgccgcattcctgccgcgaattccgaacccctgcgcgaaccctagccaccgcggcgcgcctccttgcggggcggcgctctggcggcaccattctggccgtgcggtcaccacggccgcggccgccgccgccaccggcgaccactggggcgctgagtaccacggcggcggaggcgggcgcggcgggaagagcgccgcgggccccggcgtgcagtgcgacgtggacgtggtgtcgtggcgcgagcggcgggtgttcgcgtccgtggcggtggccgccgacgtcgacaccgtgtggcgcgtcatcaccgactacgagcggctcgccgaattcatccccaacctcgttcacaggtccacattccatctctccttctcgtgtgtcattgcaaattctcgcatgctcattgagggtctaattgggggaaatttgtgcgtcgttcggcaacgcagtgggaggattccatgcccgcatcagggccgagtatggctcgagcagagggggctgcagcaagcgctttactggcatatcgaggcacgcgtcgtgttggatctcaaggaggttccggatgctgtacgtgaagtgatcaccctaacctcgtttttgttatgttgcaactaaattagtcgtgattttcgtttttcacgaggtaattaagatgcaattgaaacatatagatggttaggttaggtgaacatttgagctgaatgcatgagaatatttgtagatttgttcctgacaacccatggcatgaacgaacctagccgtcatcttctactgttaacctttctgaatgcgttgattcttgtggtgaaactatcttgatgttacaccatatttggcgtttagttgtataaattttagatagcgaatttaaagaggtgttgactattgaatgattctcctaatttcctagttattatatcaagctattcttccttattaaacagtcaacatccaggttaatggacgagagctccacttctccatggttgatggtgactttaagaagttcgaagggaaatggtccatcagatctggtccaaggtggggatttcatggtcatcgtcttgtcttgtttattgcatatgcctttgatgatcgtccagactgtttgcttactgagttaccagttacttacatttttggcagccacatgatgctctgatctagaattcgtggatccttaaacatcttcatgttttagctagcaaaaaagtaatgccagtttagaggtctcatatgacattttgtttcgttttatgacaggtcatctagtgcaattttgttgtatgaagttaatgtgattccaagatttaatttcccagcaatatttcttgagaggatcataaggtcggatcttcctgtgaatcttggagcgttggcctgtagagctgaaaacatatatttaggaaaccaaagacatggaactgcaaaatttagtggtgcaggctccaggtttcataacttccgtaatgcaaccactgagaatgatgccattgctcctagtaagttcaaagaaacacctccttctggtcttggtggtgtgcttgcttcacctccttctgagttgaacagcaaatggggagtatatggaaatgtctgcagacttgataggccgtgtgtggtagatgagatccatcttcgaagatttgatggtctcctggtaacttactaaatttgtatgcatctaagaattatcattgggttcttatattttgatgggaagcacactgacagatttgtcttcccctcgtgaaatgatttgattgaaggaacatgaaggggctcacaggtttgtgtttgctagtatcactgtgaaagcgccagtgcgagaagtatggaatattctcactgcatatgagaagttgcctgagttagtagttctatcttccttcagtttttacagttcagatatcttgttatacaagtatgagctaacaaagttatctgtcagatttgtgccgaatctggctatcagtaggattattcgtcgggataataacaaggttcgcatactgcaggtgggagctttgctaaatacttatctcatacgttactgaattagcatcttaagtctagaggtgggattgctccttttctatagaaagcgtcaatcctcaatttcactttctggttgatagctagcttaggttttcacttttagtccaagctaccaagtgatctatcatttttaccaagtcttgcaacttcatgcttttatgcacctatcactccagaatactaaacaaatggaatttagcttttgtcctaaaaatgggaagaaagatcaccttctcctcccaaaagatactttttctggaagaatttaattcaatttggttgtttcatgagctttgcaagaactgcaacatctcatatcttttataggagggttgcaagggtctactttatatggtgcttcatgcccgtgttgttatggatcttcgcgagaaacttgaacgtgagataagctttgagcaagttgaaggtgatttctactcatttaaaggaaaatggcgcctagaacaacttggtgatcagcacaccttattgaagtatatggttgagactaagatgcataaagatacctttctctcagagtctatccttgaagaggtataagaaatttatatgcatgtagtttatcaataaatatagagaacacgttaatgttatgaagtggaaaaatggtaattaaaatacgctttgttgtgcccctgaatttcaattgtggttcactgaggaccaattgtactaatactatttaatccaggggtatatgttcataatagttggttttgatgcttggtgattaagttttcaaagcaactttctgatggatgtatcatctagttgagcataacatcgtgctattgtgctcatgcgaaaacttttagtctttatgttcaccagaaattcagtaaaaataaacaccttcctgaaaaatgaatgaatctctaaattctgaataggtataagcacacatcctctatctgtattatcctgcgttgcttcatttggttagtgcaagaataatagttccatattttattatctctggataacctcacatggattttttccccctctcgtcagtaccaaaaacttgtttaaacagctttttataagatatcctcatgacgcagacattgcgctttattaaacttagttgtaccgtcacattctttaaggatatctaatcttatgacttgatgctatttggggggggggggagggggggtatgtaggggaatgaatgcagctttatgattttttgccactctttcttcttatcaaaagctgatttatgcatggtcatggtgctttgataaacatgttaatgatttttttttgctaaaagaaaacaaacattttgattacgtacctcaggtcatatatgaagatcttccatcaaacttatgtgcaatccgtgattatattgaaaaggcagaagctgagagcggtaactccacaagtagctctattgtagcatcaaatgcagatactattgctattgattatgcagaaggtaggcaatcagaacaagcatccacgtcatgttcttcgagtcctgtgaagcagagaccaaaagtcccaggccttcaaaaggacattgaggtcctcaaatctgaacttgagaaatttattgcaaaatatggtcaggatggcttcatgcctaagagaaaacaccttcgtttgcatggaagggtggatatcgagaaggcaataacacgcatgggtgggttcaggaagattgccagcataatgaatctttcactttcttataaaaaccggaaaccaagaggttattgggataatctggagaacttgcaagaagaggtaatgaaaagtatatacccctcctcccactgtgttctacagggctttagtagttcagaatgctaaaaattgtgagctgagatttccagcatgaggagtgataatgagcactcctttcattcttgacatgttattaacagtaaccattatatacagatcaggcgattccagaagaattgggggatggaccctgcttatatgccaagtagaaagtcctttgagagagcaggtatttgattatttttgtctaaatatttgctatggtcaatttattatctatattttcttagtgtagtttatctggcagttgataaaccttatagagttatacaaagtcattctgacttttttctggtcaaaattattgaagccatgtttgactgaggtgttttgaacaaaatttttcccatgcttgcttaaggtacctggaaaccttggacccttttttttctctggggcatgaaaatatgttcagtttcctctaatcatattaaaattttggcaaatttggttatatagcatcgaaagttcacgtttttggttttatagcaccgaaagttaccggttcactttaatagcacccaaagttcaccatgttcccatttttaacacttccgtcaattctcgatcgtcaggccagatatatatacatgttaagattggtgaattcagtagtttttttagagcggtgaattgaggagttgactacatagcaacatagcattcatggatgccattcctttatgtcagactgatgtttgtaacaaccttattgcctgggttcctatcatgctagttttaccagttctctcttttgtcaagaactcacaatctttctttatgaataatgctcgtactttgttgttaatgataggacgttatgacattgctcgggcgttggaaaaatggggtggagtacacgaggtttctcgccttctttctcttgaactcagacgacctagaaggcgagccaactctgatgatgagagtaaggctggatcctcatatgccataacaaataaacacgcaagcaagccaaacaaaccaagcgtttctccggacaaacagaaatggctcctgaagctgaaggatctggatgctaattggattgagtactaactaggaggacttcactaatacggtccttcaaatttatcatctgacttcaatgaagaaggatctgataatcatgtacagataaaggtgggcaagtttcttgcctacaatactggattacaacactgtaagttttccacgcaaaactccccgctctgtaaagtattccacagcttttcttcgttatctgtcctttttcttcaaaagaaaatttgaagtgcttgggtct</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0837900, RefSeq:Os03g0837900