Os04g0113000

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Revision as of 10:56, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os04g0113000| Description = Cyclin-like F-box domain containing protein| Version = NM_001058573.1 GI:115456875 GeneID:4334939| Length = 5773 bp|...")
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Gene Name

Os04g0113000

Description

Cyclin-like F-box domain containing protein

Version

NM_001058573.1 GI:115456875 GeneID:4334939

Length

5773 bp

Definition

Oryza sativa Japonica Group Os04g0113000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:784114..789886

Sequence Coding Region

784956..785601,785707..786476

Expression

GEO Profiles:Os04g0113000

Genome Context

<gbrowseImage1> name=NC_008397:784114..789886 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:784114..789886 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggccatcttaagagaatttggaacgatagagggcatggaaaacctgctacctgaagatgtgctcagcaacatcatccaccgtcttgcaccacgctaccttgccatatcccgctgcgtctgcaagacctggtgtaccatcatcgaggcccacaacctgctgcatgtggacctcctcccacggccgttgtgtggaatcttcattaactttaatgagttaagcatgtcagagttcttctcccgcccctcaaaaggcccaacggtatctggcaactttgactatttgccttgcagctcctgcattatagaccactgcaatgggcttctcttgtttcacaagtatgtggttaacccagccacacgacagtcggcgccactgcccccatgcccatatatggtcgtagagcacattttccacagggagtaccttgtcttcgaccccacgttgtcaccgcattttgaggtattcatgatccctgagatccgacgatccaatgtgtggtataacatgttgaattcagatgacaagttagaccctgcaatagaggaattagaatggccaccgtcgccttgcatcctgcatgtgttctcatcaaggacaaaggtgtgggaggagaggtcatttgttcgagaaggggaggctgcagggaatgtttctgacatgcggttggatcacccatatgttccagacacttctgtttatgttccagacacttctgtttattgccggggagtactttatgtatattgccaaaacaagtatgttatgagaatatcattatccaatgggaaatatcaagtaatcaagccaccttcagattgtgaggggatggcatacacaaatctttatttgggaaaatcaatgaaaggggtgtactgtgctgtgcgtcacttggcatcccgttttttgatctatattcttgatgaatcgagtgacagaatggagtgggtatgcaaggattcgtgtagtattcagccatgtcaaataattgacgggcctggaccctggactttacaagatattaacaatcaggagcggggatttgagtatgaagacggtaacaatgaggcagtggtagaggacaggtttgaatgggactcagacaatgataatgttattgagaccaacagcaggggatctggtggttatattaattttcttgttgacactacaaggaggggcagatataactctggtggttatattgattttcttggatttcacccttacaaggaggttatcttcttgagtgattcgttgagaagaggattggcctaccacttaaatagctcaaagattcaagacttgggcagcctccgtccaacaaattatggaacagaggtgggcattcagccatttatacaaaagttttttccatactcaccttggatgggacggtttccagaagacaattaa</cdnaseq>

Protein Sequence

<aaseq>MAILREFGTIEGMENLLPEDVLSNIIHRLAPRYLAISRCVCKTW CTIIEAHNLLHVDLLPRPLCGIFINFNELSMSEFFSRPSKGPTVSGNFDYLPCSSCII DHCNGLLLFHKYVVNPATRQSAPLPPCPYMVVEHIFHREYLVFDPTLSPHFEVFMIPE IRRSNVWYNMLNSDDKLDPAIEELEWPPSPCILHVFSSRTKVWEERSFVREGEAAGNV SDMRLDHPYVPDTSVYVPDTSVYCRGVLYVYCQNKYVMRISLSNGKYQVIKPPSDCEG MAYTNLYLGKSMKGVYCAVRHLASRFLIYILDESSDRMEWVCKDSCSIQPCQIIDGPG PWTLQDINNQERGFEYEDGNNEAVVEDRFEWDSDNDNVIETNSRGSGGYINFLVDTTR RGRYNSGGYIDFLGFHPYKEVIFLSDSLRRGLAYHLNSSKIQDLGSLRPTNYGTEVGI QPFIQKFFPYSPWMGRFPEDN</aaseq>

Gene Sequence

<dnaseqindica>4286..4931#3411..4180#gcttcagtgagccaccgcgtcgtcgcgacgccacgccgcgcaccggctcagggactagggcacgcgccgcgggggagttggccggcaatcccaacccaccccaaaacggaggtgaaatttagccggagcggtcgagccgccgcggcctcgtcggcgtggagagacgaggacaccgcgcgcggcgcgttgggttaggatttggatccgcgggttcctctgcgcataaatttcgcgcggcgcggcgggttaggatttggatccgcgcctcgcctgccacgagacaatcggttgcatctgctactgcatcctgtttcttgcaaccaggtacgctttgcccgcaattccttgtgtttgtgtagcaaatttgttgtacatgtagttcatacagaaaaggggacgaatgcttgcaaattgcaacctctagttagggtaacaatgggatgtgttcttcctgataccactcactcgctaacctgtaatcatgaacaaactggacactagattacacgagattgttttagccctgtatttctcctactacattcaccaattgtctgaatttctgcaaagctcatactcaaactctgctgggtaaaaacattagtttattacttgtattaattagtccatcaaccaagaggggacaacttactatccagacgaatcacatcattagcgaactctatgatatctacggctcatcagataggggccttatttcatcagaatcaataaaagtttcacgcatccgctagagtttgatgctaccgaatggttagtagattggctgtgaaatctatgggtaactgaatcaggcgaatactgtaggctgtccttcagcagatgggaatcttcctttagagaagcattcttgtttatcttttccgctggacattccctgttcttgatacaatgcaggacctccactacctccttgattgatgacctgttatctgtgtccatctgcaagcactgaaaggccagctcggccaccagatagcatcctctttgtttcactgtcagtctcacaaccgatctctgggtcaaccaactcaacttcatggttctgaattctgttgagagccatgttagccaagttaatgtcactgtggctcctggacatgtccacagctggttttgaggaaattagctctatcaacacaacaccaaagctgtagacatcactcttatcggttagcttgtagcactggtggtacactgggtcaacataccctggtgtgccctgtggaacagttgagacatgggtgacttcaaacgggaacaggcgtgatagtccaaagtccgcaacttttacatggaagttgttgtctagcaatatgtttttggtcttgacatcacggtgtatgatttcaactgcatgaaggtatgccagtgcctcagccgtttctatggcaattgtcattcttacaggccatgtgaggcctcgttctcctgcacggggtccatgaagatggtctgcaactgttccgtttgggatgtactcatagaccacgagaaggtcacggctagaacgagacgtgcagccatatagggtaacaatattctggtgcagtaggcgggacaagatgtctacctcatttaggaattgctctactcgtctgtagttgttcttgtaaaggcgtttcactgcaactactctcccatcccggagctttcctgaatgacagaaaggaagaattggaattgctaagttaataggagaagttatctattatggaataaagttgaacggagctcctgtcgcatgcaattaggcatgctaatgagaagtgattagatgggaaatttattaaccacaagggagttgtgcaaatatattctcctacctttgtaaacagttccaaaaccaccatcaccaagttcccttgtggcgctaaatccagcagtagcctcttcaagttcctcgtaagtgaagatatggggagaaccacccaactcaaggtatttgctgtatgattgcattgaagatgaactacgcatgagatctttcaaatctcgggtttgtttctcttcttgcgcttgtgccaatcaaaaatgaagatgcatataataaacaatgttcctccacctgctccaactcctgccaataacaaatagacaacattagcaatttatttatgccgatcagatctgaaacattttatcttcctaattttagttttaatggttggggaagaccctgaaacaagaatgaagggacaagaagggcacttgaggttggtatttacctattgcaattttctttagattgcttcttgcacctgcagaagacaaacttttagtagcctgcacttaatatcatgaacaaatagaataatcattcaaaatatagtagtgacaattcgccaactttggtatatagatgagaacttaatctccctcacaagtcataacactcagaaagtatattagatagtccggtgatcttcattacttcaaacaagacaatcaaatgaacacactgattaaggcttagaaaatgaaagggtatttattgtcaatcagatgaacaatttcgtcagtctgcaatcagcaggacaaaaacaagaacagggtattggtatggcatctttatcagacagtgtagttgaatgcttctaactacacgttacacgtttgactaggagtacataagatgccaatgtctccatcagtgaaataattgtttgaggaactaacaacaaaaaaccacaggaacttgaagcaaagactcataattcaaaacacaatatcaatatccactctgttccgaacactgctatgaccatggcggggtttagtttcttttcttgatagccaactctacgtcacgtgcaatattatagcagtttatctagtggacattaagccgcagattagcatggaaatattcttatatgacagaatgatgcctcgttcattttttaaaaaaaaagctatctacaagatgggcactttggatgcattgaatccgttagtagggtctgcgcagcatgttcaggaaactctatttaatacaaatcgactgggtaagtttaccgtgatattttgatttcacaaactcaccacacttctcagggtgcagcccgtcggtgcaattgcaggcgaatcgcaggccgtcgccatatgtgcattgccctccgcttgctacgcatttggggcaatcacctgatgcccccgcccaatccaggagaaaaccactcatgctggcaacgtaaccatctctactcccattgggatgctcaaggatcggcaccatctctactctacgtttgatatgacaaatcacatcatatagaaagtatttagtatggatttatcatgaaatcatgtttgttagagaaatctaatttttattttatttttactgtgcagatagaagtggggtttgtgtggatatgaaggaataaatggccatcttaagagaatttggaacgatagagggcatggaaaacctgctacctgaagatgtgctcagcaacatcatccaccgtcttgcaccacgctaccttgccatatcccgctgcgtctgcaagacctggtgtaccatcatcgaggcccacaacctgctgcatgtggacctcctcccacggccgttgtgtggaatcttcattaactttaatgagttaagcatgtcagagttcttctcccgcccctcaaaaggcccaacggtatctggcaactttgactatttgccttgcagctcctgcattatagaccactgcaatgggcttctcttgtttcacaagtatgtggttaacccagccacacgacagtcggcgccactgcccccatgcccatatatggtcgtagagcacattttccacagggagtaccttgtcttcgaccccacgttgtcaccgcattttgaggtattcatgatccctgagatccgacgatccaatgtgtggtataacatgttgaattcagatgacaagttagaccctgcaatagaggaattagaatggccaccgtcgccttgcatcctgcatgtgttctcatcaaggacaaaggtgtgggaggagaggtcatttgttcgagaaggggaggctgcagggaatgtttctgacatgcggttggatcacccatatgttccagacacttctgtttatgttccagacacttctgtttattgccggggagtactttatgtatattgccaaaacaagtatgttatgaggtaaatactcacttcattggcattatcattcatctttgtacctagtaatgaaacgaaaattcaattgtcgtttattaatatttctcaaatatttgattcttgtagaatatcattatccaatgggaaatatcaagtaatcaagccaccttcagattgtgaggggatggcatacacaaatctttatttgggaaaatcaatgaaaggggtgtactgtgctgtgcgtcacttggcatcccgttttttgatctatattcttgatgaatcgagtgacagaatggagtgggtatgcaaggattcgtgtagtattcagccatgtcaaataattgacgggcctggaccctggactttacaagatattaacaatcaggagcggggatttgagtatgaagacggtaacaatgaggcagtggtagaggacaggtttgaatgggactcagacaatgataatgttattgagaccaacagcaggggatctggtggttatattaattttcttgttgacactacaaggaggggcagatataactctggtggttatattgattttcttggatttcacccttacaaggaggttatcttcttgagtgattcgttgagaagaggattggcctaccacttaaatagctcaaagattcaagacttgggcagcctccgtccaacaaattatggaacagaggtgggcattcagccatttatacaaaagttttttccatactcaccttggatgggacggtttccagaagacaattaatttcatctggaagattacgatgtattgcatatgaagcattggtgctcaggacaagctgtgaggtgcaacttgagagttcgtaccagctgagtttctcaagttgttcattctatccagtaagaaattatttgatgttagactacaggacatgggacctgtctgctgttactgttgcatgagctcctgccattttctgcttccgtatgcttgctacaatggaagtttagatgttacaaatcaacaattatggtcagtctcatgaagaagaacgtcccattcatgatgggcgataagtcccatactcaatgttggaggcatgccatgaagcccttcggccggacctgccgaaaccatagtaccatcaaggattcaagccaaagccgtcaagaccacttgggcgaaaccctatggcgaaagccataagcgaaggtggcgaagactgtaaagccgtcaagaccagttgggcgaagccctatggcgaaagccataagcgaagatggaaagccgcgtcggtaccccgcaagtaaaggcttctcgggcgaaggcatctcgggcgaagggcgtatgacgaaccacaaagactttgccatgacgagttcggcatcaaggaggcccaacaggcggcccccgacctttaaggccccttcgccaagaggcccatatatgcaaatgacactgcgtacccatgtaaatgtcccttttataagggcaaccatgtaaaatcccctgtaaacctaaacctagaaggtgtaagcctgtgctaaggctataaatagacccacagggccatgtagtggggggatcccaaaaattttatcaatcaatacatttattgcttttcc</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0113000, RefSeq:Os04g0113000