Os04g0201000

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Revision as of 10:59, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os04g0201000| Description = Conserved hypothetical protein| Version = NM_001186859.1 GI:297722848 GeneID:9272060| Length = 3393 bp| Definition ...")
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Gene Name

Os04g0201000

Description

Conserved hypothetical protein

Version

NM_001186859.1 GI:297722848 GeneID:9272060

Length

3393 bp

Definition

Oryza sativa Japonica Group Os04g0201000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:6883162..6886554

Sequence Coding Region

6883162..6885489,6885511..6886296,6886546..6886554

Expression

GEO Profiles:Os04g0201000

Genome Context

<gbrowseImage1> name=NC_008397:6883162..6886554 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:6883162..6886554 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggacgaggtaattaccgcagagaatgttgctgaggctgttgatagtataattgacaaactaaagaaatcagatgtatcaaatgtggtctattttgatggttgggaaggattgggtgtatctgctgtcctcagagctgttgccgaacggcttacactgggccagatcacggacccagaattgaggtttgaaaagataatccacattgattgctcgaggtggaaaagcataagggaaatgcagaggaaaattgcagagaaactagagatgacccaagcaaaagatcttattgatgagcaggatgaggctgatgatatcaatggaaaagatgaaagctccagagacgtgatcaatgatgttggaatagctgttaatgatgtcctaatgagtggaagatttcttgtggtttttcataatgggagtgataatgaaataaaagatgtaactaattttggtctgcctctatatcagctgtataagggaaacaaaatattgtggaccttcaggggcaggtttcggctgagtaccaaaattcaggacaaggtgcaaaaggcagatgtttttcttgctgccgaattccataacaaaatatatgggatggagttccaggatcaaagccattggtgggatatattgtgtgaggaggcggcagaaattgcttccaacacatgttccggagtagccaagctgcaccctacaacaattgccaaatgttggttgtatatatcgaaacttaattttgttggcagagacatcattgactatgactgggcagttcatgcttcaaactattgggaatgggagattgctgatgctctacaacaagagatgtggcaagaatgggacgaccctggactttaccacatgatgcggaacactgacaactggatttcaacaagtcacctgatttcaagtaattatgggttcctggctgcctcagcagtggctcaaacagtgtcatcatttttcttggcagaacaccaaattgacacagaatcaaaagacacggtggaactagtagaatatttttttaagtcaaagctcaaccctgcacatcttttacaaaattataatgacatgtttcaacatgcagagaaccttagagtgctaaaacttagcctctgtacctttagatttgcttcacctcctttcctctgttgccgcggattgagattccttgggcttgataactgccttgatctgaacattgatgctggagaggaggttcagtcttggaactgttttcatggtttgtgggtgctagacctacagtacacacagtgggttttctccccacagatgattgaggaaatgaacaatgtcagggagctcaatgttaagggagtgaaactgcacaacttgagacatatttggaaacggcagcataacaagatacagaagcttcgtgtaatcaagacgattgatcaagactatacggcaaccaaagatgaaaaggatccattcacattcacattctcaggtatggaaaagatggagattctagacttgtcaggtaactctaccatgcaagcttttcctgacctgtccaaggcaacatgtctgaagactgtcactcttgatggttgtgttgggttggattctgtcagtgatagcaaccttccggtatcacttgaggaattcagcttagttgcagcatcagaacagtatccaaaggcagcaaatattacaaaaatctcattatctggatgttgccggttaaaaaagctaatcttgagtggactgccaaaacttgaggaattggatctttccggcacaatattggaaaaacttgacctggatgccatgcaggcagaaaaacttaatcgtcttcttctgtttggttgtctgcatctttgtgcaataaagtggtcagatgttacaaaaccacaattggatgagttacatgtagatacagttggagtacatctggaaggcaaacgacaaaatagcttgtcacctgtccaggatgatgataaattattccaatcacatgttgttatcatggatcctaggcttcttcggtttctacagttgtttgcaatgcaaagtcaccatgtgcatttctgcatgtcacctgtttttgttaattattgcaaagatgaaggacaaagtaagcagtgcagtagtgaacaaataaggaatgcccatgttgatcgaacagttgcagggaatatgtgcagtgatatatttgacagagttgttgcacttagtgttgcccctgtgatttgtccttgcccgcctctgcctttagagtcaaagtgcaacagaagctgcaaggtagagatcagaaacagaaaacaattgcaggggaatgacaatatcttgggaaatttcatagacattgtacactctctaaacgtgcatgatgactcttggatgactagtattcctggatcaaattggggtcggattaagtggtgctgtattgagagatgccccaagttacattctgtattcaaactcagagaccatgaccaaatcgtagctttctcttggctagagaccttctgggcatcacatctccaaacagcccactgcatttggagcatggaagtcaagcatgtaaatgttgattccttcaagaaactgcagtatatacatctggattcctgtcctaggctcatccatgtacttcccttgtccaacaacttaccaagcttggagaccattcagatcctgtactgcaccagcctcatatatgttttccctttgaacacagcaaactccaaggggacagtaagcaatgatgctattgatttcccaaagctgaagcacgtccacctgcatgagcttcccagcttgaaagggatatgtgaggcaaaaataatgtcagctcccatgctggaggccatcatgatcaggggctgctgtagtcttagacacctgcctgacgtccaaggattgcatgaaccaagacccatagtatactgtgagaaggattggtgggataacctagtgtggcctcagaaagaaggtggctatgatcagtcattgctctacaagcggcagtcagcgcaatactataagaaggccttgcccaaaggctctattctcaggtcaaatctatccacatacctctataagccaataagcaaaaaatattctatagatttgcatggctag</cdnaseq>

Protein Sequence

<aaseq>MDEVITAENVAEAVDSIIDKLKKSDVSNVVYFDGWEGLGVSAVL RAVAERLTLGQITDPELRFEKIIHIDCSRWKSIREMQRKIAEKLEMTQAKDLIDEQDE ADDINGKDESSRDVINDVGIAVNDVLMSGRFLVVFHNGSDNEIKDVTNFGLPLYQLYK GNKILWTFRGRFRLSTKIQDKVQKADVFLAAEFHNKIYGMEFQDQSHWWDILCEEAAE IASNTCSGVAKLHPTTIAKCWLYISKLNFVGRDIIDYDWAVHASNYWEWEIADALQQE MWQEWDDPGLYHMMRNTDNWISTSHLISSNYGFLAASAVAQTVSSFFLAEHQIDTESK DTVELVEYFFKSKLNPAHLLQNYNDMFQHAENLRVLKLSLCTFRFASPPFLCCRGLRF LGLDNCLDLNIDAGEEVQSWNCFHGLWVLDLQYTQWVFSPQMIEEMNNVRELNVKGVK LHNLRHIWKRQHNKIQKLRVIKTIDQDYTATKDEKDPFTFTFSGMEKMEILDLSGNST MQAFPDLSKATCLKTVTLDGCVGLDSVSDSNLPVSLEEFSLVAASEQYPKAANITKIS LSGCCRLKKLILSGLPKLEELDLSGTILEKLDLDAMQAEKLNRLLLFGCLHLCAIKWS DVTKPQLDELHVDTVGVHLEGKRQNSLSPVQDDDKLFQSHVVIMDPRLLRFLQLFAMQ SHHVHFCMSPVFVNYCKDEGQSKQCSSEQIRNAHVDRTVAGNMCSDIFDRVVALSVAP VICPCPPLPLESKCNRSCKVEIRNRKQLQGNDNILGNFIDIVHSLNVHDDSWMTSIPG SNWGRIKWCCIERCPKLHSVFKLRDHDQIVAFSWLETFWASHLQTAHCIWSMEVKHVN VDSFKKLQYIHLDSCPRLIHVLPLSNNLPSLETIQILYCTSLIYVFPLNTANSKGTVS NDAIDFPKLKHVHLHELPSLKGICEAKIMSAPMLEAIMIRGCCSLRHLPDVQGLHEPR PIVYCEKDWWDNLVWPQKEGGYDQSLLYKRQSAQYYKKALPKGSILRSNLSTYLYKPI SKKYSIDLHG</aaseq>

Gene Sequence

<dnaseqindica>1066..3393#259..1044#1..9#atggacgaggtgggggacggtggctgcggcaacaagtctccacatcaccagcctcgcctacatcggcatacctagtttggtgacagctcaaagtggagtagcaaataaggatttccccccctctaaatatatagtttcatttttttttctctgaatatagtgttcatttgatttttcttcttctagacagtcgtgttactttgtacgcaacccagctgagctgagctaacctcagttaattactgttaaccactgcaggtaattaccgcagagaatgttgctgaggctgttgatagtataattgacaaactaaagaaatcagatgtatcaaatgtggtctattttgatggttgggaaggattgggtgtatctgctgtcctcagagctgttgccgaacggcttacactgggccagatcacggacccagaattgaggtttgaaaagataatccacattgattgctcgaggtggaaaagcataagggaaatgcagaggaaaattgcagagaaactagagatgacccaagcaaaagatcttattgatgagcaggatgaggctgatgatatcaatggaaaagatgaaagctccagagacgtgatcaatgatgttggaatagctgttaatgatgtcctaatgagtggaagatttcttgtggtttttcataatgggagtgataatgaaataaaagatgtaactaattttggtctgcctctatatcagctgtataagggaaacaaaatattgtggaccttcaggggcaggtttcggctgagtaccaaaattcaggacaaggtgcaaaaggcagatgtttttcttgctgccgaattccataacaaaatatatgggatggagttccaggatcaaagccattggtgggatatattgtgtgaggaggcggcagaaattgcttccaacacatgttccggagtagccaagctgcaccctacaacaattgccaaatgttggttgtatatatcgaaacttaattttgttggcagagacatcattgactatgactgggcagttcatgcttcaaactattgggtgtgtgatgggatcattcaggaatgggagattgctgatgctctacaacaagagatgtggcaagaatgggacgaccctggactttaccacatgatgcggaacactgacaactggatttcaacaagtcacctgatttcaagtaattatgggttcctggctgcctcagcagtggctcaaacagtgtcatcatttttcttggcagaacaccaaattgacacagaatcaaaagacacggtggaactagtagaatatttttttaagtcaaagctcaaccctgcacatcttttacaaaattataatgacatgtttcaacatgcagagaaccttagagtgctaaaacttagcctctgtacctttagatttgcttcacctcctttcctctgttgccgcggattgagattccttgggcttgataactgccttgatctgaacattgatgctggagaggaggttcagtcttggaactgttttcatggtttgtgggtgctagacctacagtacacacagtgggttttctccccacagatgattgaggaaatgaacaatgtcagggagctcaatgttaagggagtgaaactgcacaacttgagacatatttggaaacggcagcataacaagatacagaagcttcgtgtaatcaagacgattgatcaagactatacggcaaccaaagatgaaaaggatccattcacattcacattctcaggtatggaaaagatggagattctagacttgtcaggtaactctaccatgcaagcttttcctgacctgtccaaggcaacatgtctgaagactgtcactcttgatggttgtgttgggttggattctgtcagtgatagcaaccttccggtatcacttgaggaattcagcttagttgcagcatcagaacagtatccaaaggcagcaaatattacaaaaatctcattatctggatgttgccggttaaaaaagctaatcttgagtggactgccaaaacttgaggaattggatctttccggcacaatattggaaaaacttgacctggatgccatgcaggcagaaaaacttaatcgtcttcttctgtttggttgtctgcatctttgtgcaataaagtggtcagatgttacaaaaccacaattggatgagttacatgtagatacagttggagtacatctggaaggcaaacgacaaaatagcttgtcacctgtccaggatgatgataaattattccaatcacatgttgttatcatggatcctaggcttcttcggtttctacagttgtttgcaatgcaaagtcaccatgtgcatttctgcatgtcacctgtttttgttaattattgcaaagatgaaggacaaagtaagcagtgcagtagtgaacaaataaggaatgcccatgttgatcgaacagttgcagggaatatgtgcagtgatatatttgacagagttgttgcacttagtgttgcccctgtgatttgtccttgcccgcctctgcctttagagtcaaagtgcaacagaagctgcaaggtagagatcagaaacagaaaacaattgcaggggaatgacaatatcttgggaaatttcatagacattgtacactctctaaacgtgcatgatgactcttggatgactagtattcctggatcaaattggggtcggattaagtggtgctgtattgagagatgccccaagttacattctgtattcaaactcagagaccatgaccaaatcgtagctttctcttggctagagaccttctgggcatcacatctccaaacagcccactgcatttggagcatggaagtcaagcatgtaaatgttgattccttcaagaaactgcagtatatacatctggattcctgtcctaggctcatccatgtacttcccttgtccaacaacttaccaagcttggagaccattcagatcctgtactgcaccagcctcatatatgttttccctttgaacacagcaaactccaaggggacagtaagcaatgatgctattgatttcccaaagctgaagcacgtccacctgcatgagcttcccagcttgaaagggatatgtgaggcaaaaataatgtcagctcccatgctggaggccatcatgatcaggggctgctgtagtcttagacacctgcctgacgtccaaggattgcatgaaccaagacccatagtatactgtgagaaggattggtgggataacctagtgtggcctcagaaagaaggtggctatgatcagtcattgctctacaagcggcagtcagcgcaatactataagaaggccttgcccaaaggctctattctcaggtcaaatctatccacatacctctataagccaataagcaaaaaatattctatagatttgcatggctag</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0201000, RefSeq:Os04g0201000