Os04g0201900

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Revision as of 10:59, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os04g0201900| Description = Curculin-like (mannose-binding) lectin domain containing protein| Version = NM_001058760.2 GI:297602231 GeneID:433514...")
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Gene Name

Os04g0201900

Description

Curculin-like (mannose-binding) lectin domain containing protein

Version

NM_001058760.2 GI:297602231 GeneID:4335148

Length

4301 bp

Definition

Oryza sativa Japonica Group Os04g0201900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:6931873..6936173

Sequence Coding Region

6931873..6932068,6932662..6935066,6936021..6936173

Expression

GEO Profiles:Os04g0201900

Genome Context

<gbrowseImage1> name=NC_008397:6931873..6936173 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:6931873..6936173 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcatcgccggcggcgcgcgccgatccgccggaacggagccgccggccgcggcgacggcaaggggagggaggccacgggcgaggggcttcaactcgcagcggcagcaagccggcaactgccaactggtctgcaaagagtactggttcagtgctactgtccccaacttgtgcacaaactcagaagaacatcacattgggctccactttggcaccccagagtcctgcctcttcatggctatcaccctctggcgacttcgcatttggcttccgacctgtagagggcaacacctccttctacctcatcgccgtctggttcaacaagattagcgataagacagttgtctggtatgccaaaaatactgaccaagatccatcgatagtagaagtgccatctgattcttttctccaactcactaatgatggtgcactctcactgaaagaccggtctggtcaggagggctggaatccccaggttaccagtgtggcatatgctagcatgcgcgacaccggcaattttgtgctccttggtgcagacggcacgacaaagtggcagacctttgacatgccgtcagacaccatcttgcctactcaggtgataccttgcaacaagactcgcaacaagtcactccgtgcccgactcgacatcaatgactactccagtggtcggtttctccttgatgtgcaaactgatggaaaccttgccctgtatcttgttgctgttccctctggatccaaataccagcaatattggtccactgacacgactggaaatggctcagagttggtattcagtgagactgggaaggtatactttgcactgacagatggtacacagatcaacatctcatcaggtgcaggaattggatcaatggcagactacttccatcgcgccacactggaccctgacggtgttttccggcaatatgtgtacccgaagaaagcgaatgcaggcatcctaggtggtgagacatggacagcagtgagcatgcagccccagaatatctgccatgccatagtttcagatgttggcagtggcgtctgtgggttcaacagttactgcacctttgatggcaccaggaatcagattgcaagctgccaatgcccaccatggtacaagttcttcgatgagcagaagaagtacaaagggtgtaagcaagactttcaaccgcatagctgcgacttggatgaggcaacggcacttgctcagtttgagctgagaccaatttatggtgtggattggccactgtctgactatgagaaatatgagcccataggacaagatgattgtggaaggctgtgtgtgatcgactgcttctgcgccatggcggtgtacaatcagagcaccagcacttgctggaagaagaagctccctttgtcaaatgggaatatggctgactatgtccagaggaccgttcttctcaaggtgccaagtagcaatagttcgcaatccatgatcagtacaagctccaacaaatggaagaggaacaggaagcactgggtcctagggagttctttgattcttggaacctccatattggtgaactttgcactcatctccattttcctttttggtacttactgtagaatagccacaaaaaagaatatcccattgtcacaagcatcaagtaaatcccaactacccttgaagaccttcacttacaaagagctggagaaggcaacggctggcttccatgagattctaggtgccggtgcctctggtgttgtgtacaagggccagttggaggatgaactcaagaccaacattgcagtgaaaaagattgacaagctccaaccagaaaccgagaaggagttcatggtagaagtcgagaccattgggcagacattccacaagaatttggttagattgcttggtttctgtaatgaaggagccgaaagactgctagtttatgagttcatgaccaatggccctctcaaccgtcttttgttcgacaatagtcgcccacattggaacacccgagttcatatcgcgcttggggtggcaagaggtttgctctacttacatgacgaatgtagcaagcaaatcatccattgtgacataaagccgcagaatatccttcttgatgacaaccttgtggccaagatttcagactttggcctagcaaagcttcttttgacaaaccaaacaaggacaaacaccggtattcggggtactcgaggttatgttgcacctgagtggttcaagaacattgggatctctaccaaggttgatgtttatagcttcggagtgatactactagagcttgtttgctgtaggaggaatgtcgagctagaggttgtcgatgaggaacagacgatagtgacttactgggccaatgactgctaccggtctgggaggattgatttgctggtagagggcgatgatgaggcgatctacaatattaagaaggtggaaagatttgtgacagtggcattgtggtgccttcaggaggacccaagcatgcgacctaacatgctaaaggtgacacaaatgcttgatggtgcagttgcaatccccagtcctcctgatccctgttccttcatcagctcacttccatacgcttctaaatgtggatacgactttttgaagaactacgaagattgcactctaatgactcggcaacaacctgatgatgtgaaaggaaaaggaccaatgtttgttgagacatacatacaacaacagctgaacgaaaagcaagtggcaaactccaccaaaggtgtagccaagttgaatgttgatgcaggtttcaaatag</cdnaseq>

Protein Sequence

<aaseq>MASPAARADPPERSRRPRRRQGEGGHGRGASTRSGSKPATANWS AKSTGSVLLSPTCAQTQKNITLGSTLAPQSPASSWLSPSGDFAFGFRPVEGNTSFYLI AVWFNKISDKTVVWYAKNTDQDPSIVEVPSDSFLQLTNDGALSLKDRSGQEGWNPQVT SVAYASMRDTGNFVLLGADGTTKWQTFDMPSDTILPTQVIPCNKTRNKSLRARLDIND YSSGRFLLDVQTDGNLALYLVAVPSGSKYQQYWSTDTTGNGSELVFSETGKVYFALTD GTQINISSGAGIGSMADYFHRATLDPDGVFRQYVYPKKANAGILGGETWTAVSMQPQN ICHAIVSDVGSGVCGFNSYCTFDGTRNQIASCQCPPWYKFFDEQKKYKGCKQDFQPHS CDLDEATALAQFELRPIYGVDWPLSDYEKYEPIGQDDCGRLCVIDCFCAMAVYNQSTS TCWKKKLPLSNGNMADYVQRTVLLKVPSSNSSQSMISTSSNKWKRNRKHWVLGSSLIL GTSILVNFALISIFLFGTYCRIATKKNIPLSQASSKSQLPLKTFTYKELEKATAGFHE ILGAGASGVVYKGQLEDELKTNIAVKKIDKLQPETEKEFMVEVETIGQTFHKNLVRLL GFCNEGAERLLVYEFMTNGPLNRLLFDNSRPHWNTRVHIALGVARGLLYLHDECSKQI IHCDIKPQNILLDDNLVAKISDFGLAKLLLTNQTRTNTGIRGTRGYVAPEWFKNIGIS TKVDVYSFGVILLELVCCRRNVELEVVDEEQTIVTYWANDCYRSGRIDLLVEGDDEAI YNIKKVERFVTVALWCLQEDPSMRPNMLKVTQMLDGAVAIPSPPDPCSFISSLPYASK CGYDFLKNYEDCTLMTRQQPDDVKGKGPMFVETYIQQQLNEKQVANSTKGVAKLNVDA GFK</aaseq>

Gene Sequence

<dnaseqindica>4106..4301#1108..3512#1..153#atggcatcgccggcggcgcgcgccgatccgccggaacggagccgccggccgcggcgacggcaaggggagggaggccacgggcgaggggcttcaactcgcagcggcagcaagccggcaactgccaactggtctgcaaagagtactggttcagtggtgattcctgattccctcctgttaatttactcagtgaattggatgccaacagtggagtcgttaggtcgagaatgcatacgatttgtttgatgaattgcttgtagagcccaatagtttgacacttcgattcgttactgttttcagttcagttcagtaaactgtgattcagttcaagttcgttatatgatagaaatatcccaggactagtgagtccaaatacagctacttattgttcatcatgtagaattgaagtgacctagggaacttccgaacttataaaatcggaccaaaatattactctttacactgtatttgacataatctatgcaaaagcatgcctgaaatttatcgcatactaagctgttttagtacaaacatttgttactcagacctgatactgatagtcattatgcaattggcaaaagattcagagacacatgtcacacattttttctgcttcatttttttttagaggagttcaatgtatgcaaacatttcttctgccctgaagtgtagggtagaaaaacattttctcggcaatctatagctagttaacacctgtcaagcctgtctacttcagcaagaatgtcgacgacagcaaatcctccccgtggtgctactaatggccagaattgactagcttgatgccttggtctatttggtctcactagctgttacctgttgtttttgtctggacaagaatttctacggatttactgctatcgtgacacgaattccctattgctgctttctgcgtggcaaattccagtaagtgcttgattagtcaagtatatgtagaattccatggtgacgaagacctttccatgacaagtgttaggatagctctataactacacaagtttggcagctcaccagctgttatcaggggtaggaagcaagagcctgaagcaaagaacaatggttgctctgctactctttcccatgctgttgcagctactgtccccaacttgtgcacaaactcagaagaacatcacattgggctccactttggcaccccagagtcctgcctcttcatggctatcaccctctggcgacttcgcatttggcttccgacctgtagagggcaacacctccttctacctcatcgccgtctggttcaacaagattagcgataagacagttgtctggtatgccaaaaatactgaccaagatccatcgatagtagaagtgccatctgattcttttctccaactcactaatgatggtgcactctcactgaaagaccggtctggtcaggagggctggaatccccaggttaccagtgtggcatatgctagcatgcgcgacaccggcaattttgtgctccttggtgcagacggcacgacaaagtggcagacctttgacatgccgtcagacaccatcttgcctactcaggtgataccttgcaacaagactcgcaacaagtcactccgtgcccgactcgacatcaatgactactccagtggtcggtttctccttgatgtgcaaactgatggaaaccttgccctgtatcttgttgctgttccctctggatccaaataccagcaatattggtccactgacacgactggaaatggctcagagttggtattcagtgagactgggaaggtatactttgcactgacagatggtacacagatcaacatctcatcaggtgcaggaattggatcaatggcagactacttccatcgcgccacactggaccctgacggtgttttccggcaatatgtgtacccgaagaaagcgaatgcaggcatcctaggtggtgagacatggacagcagtgagcatgcagccccagaatatctgccatgccatagtttcagatgttggcagtggcgtctgtgggttcaacagttactgcacctttgatggcaccaggaatcagattgcaagctgccaatgcccaccatggtacaagttcttcgatgagcagaagaagtacaaagggtgtaagcaagactttcaaccgcatagctgcgacttggatgaggcaacggcacttgctcagtttgagctgagaccaatttatggtgtggattggccactgtctgactatgagaaatatgagcccataggacaagatgattgtggaaggctgtgtgtgatcgactgcttctgcgccatggcggtgtacaatcagagcaccagcacttgctggaagaagaagctccctttgtcaaatgggaatatggctgactatgtccagaggaccgttcttctcaaggtgccaagtagcaatagttcgcaatccatgatcagtacaagctccaacaaatggaagaggaacaggaagcactgggtcctagggagttctttgattcttggaacctccatattggtgaactttgcactcatctccattttcctttttggtacttactgtagaatagccacaaaaaagaatatcccattgtcacaagcatcaagtaaatcccaactacccttgaagaccttcacttacaaagagctggagaaggcaacggctggcttccatgagattctaggtgccggtgcctctggtgttgtgtacaagggccagttggaggatgaactcaagaccaacattgcagtgaaaaagattgacaagctccaaccagaaaccgagaaggagttcatggtagaagtcgagaccattgggcagacattccacaagaatttggttagattgcttggtttctgtaatgaaggagccgaaagactgctagtttatgagttcatgaccaatggccctctcaaccgtcttttgttcgacaatagtcgcccacattggaacacccgagttcatatcgcgcttggggtggcaagaggtttgctctacttacatgacgaatgtagcaagcaaatcatccattgtgacataaagccgcagaatatccttcttgatgacaaccttgtggccaagatttcagactttggcctagcaaagcttcttttgacaaaccaaacaaggacaaacaccggtattcggggtactcgaggttatgttgcacctgagtggttcaagaacattgggatctctaccaaggttgatgtttatagcttcggagtgatactactagagcttgtttgctgtaggaggaatgtcgagctagaggttgtcgatgaggaacagacgatagtgacttactgggccaatgactgctaccggtctgggaggattgatttgctggtagagggcgatgatgaggcgatctacaatattaagaaggtggaaagatttgtgacagtggcattgtggtgccttcaggaggacccaagcatgcgacctaacatgctaaaggtgacacaaatgcttgatggtgcagttgcaatccccagtcctcctgatccctgttccttcatcagctcacttccatagtatctcttgcatggtcaaataagttttcatatgcgtcaaaacaataagcatttggtgaatagctttagctatattcagaaggcaaatagttattaatttggcattgtactgtagcaacttttagatctcccatgtgtagctataattgagtgggatacacaactggtccatctctttgagctagatatttatctatatctgttatgtaataaaaaaaggaattatagctatacattcaactaatatttcctagtagaattatagcttctaaaataattcatcgaataatacaatgaatatcttttaatccatattttggaaatgagaagagaaaatagaagatgacaaacgtagtaggagacttcttttttgtgtgtttggaatgtaataaacgtgttactgagacagtagttatagtgtatgagggttgttctggatcgatggcaaaacatatcctaacaatgttttgatagattgcaaagtaaatatgataagttcagtttgaaccgagcggttgccatcggaaaccagttgaacaaaatttttctaaacttttttttactcttttttcaacttgacttgtttgttcaagcgcttctaaatgtggatacgactttttgaagaactacgaagattgcactctaatgactcggcaacaacctgatgatgtgaaaggaaaaggaccaatgtttgttgagacatacatacaacaacagctgaacgaaaagcaagtggcaaactccaccaaaggtgtagccaagttgaatgttgatgcaggtttcaaatag</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0201900, RefSeq:Os04g0201900