Os04g0221600

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Revision as of 11:00, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os04g0221600| Description = Zinc finger, FYVE/PHD-type domain containing protein| Version = NM_001058804.1 GI:115457337 GeneID:4335199| Length =...")
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Gene Name

Os04g0221600

Description

Zinc finger, FYVE/PHD-type domain containing protein

Version

NM_001058804.1 GI:115457337 GeneID:4335199

Length

8838 bp

Definition

Oryza sativa Japonica Group Os04g0221600, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:8109840..8118677

Sequence Coding Region

8110148..8110495,8111285..8111407,8111489..8111559,8111632..8111884,8112137..8112292
,8112378..8112832,8112911..8113294,8113382..8113451,8117145..8117464
,8117555..8118299

Expression

GEO Profiles:Os04g0221600

Genome Context

<gbrowseImage1> name=NC_008397:8109840..8118677 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:8109840..8118677 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgaaggggggccgcttgcaccgtctggagcggccgcccgccgcccacatcaccaccgccgcagccgccaccacgcccgctccggcgcccgccgatgattggggggatggctcgtggacggtggactgctcgtgcggcatcacgtacgacgacggggaggagatggtgagctgcgacgagtgcaacgtctgggtgcacacgcggtgcgcccgctacgtccgcggcgtgcacatctctttctcttgccacaactgcaaggccaagcgcgccccctcctccgccgacgaggctgaggtcgccgagctcctggccgagctgcccacccaccgcccacggccgttgtaccgccgatgggctgaagtccctctcccctcccgtgtccatgtccacgggcttccaggcggtacagacaccgccctattccgcagcgccgcaccctcccctgtattctcgtccgccctatggcgctgtgctgggtacgtacccaagagattcggcttccgctactgcgaattcccctactgggctgatgacaaggacggtgccaacgctctatttgcgctggctagagagaagcgcaaggaaaaggcagagactaggttccctctccgccttggagccatacacaaggacaagaattatgtcaggacgctgagcatttgcggcgataaggtggatggcgttgagcactctgtggacgatgacgcaaagaggacatctccaccaagtgatgcaaagaagagaggaacatccattagcattgtagagcctgatacttgggacaatggttgtgagaagaaaagggattttgatgtgccagctagtgaggatcagcatgccaaaacaaacatggtaaattctgatttgcacgtgcttgttgaagctaagaagaagagggcttcatcctcagaacgaagtggggataagaagtgctctgcctcgaaggaaattactgggatgctaaagaaatatgaacctaaggagtccaagcgattggtgatatcctcaggagttgcaacaacggcagctgtagcagagcaagaagtgcactcacgatttgtgaagggtagcgtgtatgaaggactagacgggaatcaaaatgtaggtttacagactggagtaagatcgaatggagttgtgaaaagggatgatgccaaacgatcaaatggagatgtccagagcgatgctgctcctgagaaaatgaatgagggtctggatcttcagaagcaatcaaatcaaacttcaaatcttctggttgttggtggtgtaccggatttacagactaaccagtcagaatcattgactatcaagaaggaagcatctacagatgatcatgagagaaccgaggctatccagtttgtaagtgatgagcataaaagtggaaaacaagatactgcaatgttatcaacccttcagaggcattcgtccaagttagcatctgacttagtttatcaacatccaaagtctgaaacacaaaatccgatgcacacaataccagagcatccaaactcaagtttagaaccatcatcagaagaaactactgttcgtttggtaaagaaggatcagacaaggttggtctcatccgctgacagcgaaaatgattttgcaaaaaaatctgagagttcccaggatcgcacaagatcctctgataaagttcaattgaaaggctttgttccgtctgcgccaaaatcatctcaaggaagtagaacatatgtatcttctgccaaaaatagatttatagtgccaaaggagcagttgcaaaagacatcaactgaaggaaacgctccaccagggtcattacaaggtgaagtggcacccttacattctcgtaataaggcaatgcctttgagcttttaccaaagaaaggacaagatccaccaccgctctattcatatcacacaggacacttccaatagttcagcatcggctgagctgcaatctactgaaacaacagcttcattgagcgatgaacagcttgcattgttattacatcaacaattgaacagctcccccagagtaccaagggtgccacgttgtcatcaagcatctaccatgcagatgctacatccaactggagctagtgtgttctcaaaacggtcttcagcacatggaggaagggatcaagcactggtcttaaagaagaggaacaaagatgatgcatggagagataatgatgagaccaagaagacaggaaaggtgtctagtgttgaacggaggcatagagatagtagcacagaacgtgtccttgctgcaaaagactcatgcaaatttactgaaaatatagaatcagaacagagaaatcgtggcatttgttcaactggagccacctctggcgtaggaaatgatgctccaatagatagaggtgtttcacatgatttacctgggttgattgaggaaatcattagcaaaaatacaaacataacatatggtgaactgtgcaacgctattcgccagcattggggggatttaagtaaacccaacgtggaaaacaatgcataccccaactatttacatgctgttaacgattgtcttaggaacaggaatgactgggctcaccttgttgaccaggctgcaatgatgaatccaaacaagcgccggaaggtagaggaaagtgactctttgtcagcagatgtactggcaaccgagaagacaaataaagaggctaaaaggggtccagaagacacaaatgctgaatcacaccatgaaattctgccaaggggcaaacgcaaggctcggaaatgcaggcgtcttgaactgaaagggaggagagtcaacgatacgaggaagagatctagctttgattcggcctctgatgatgatgataccaccttgtcggattccagtagtgacagaaatgacacccctatggataagagcctagaagatagttttgttatagctaagaatgcagattcaagttcatag</cdnaseq>

Protein Sequence

<aaseq>MKGGRLHRLERPPAAHITTAAAATTPAPAPADDWGDGSWTVDCS CGITYDDGEEMVSCDECNVWVHTRCARYVRGVHISFSCHNCKAKRAPSSADEAEVAEL LAELPTHRPRPLYRRWAEVPLPSRVHVHGLPGGTDTALFRSAAPSPVFSSALWRCAGY VPKRFGFRYCEFPYWADDKDGANALFALAREKRKEKAETRFPLRLGAIHKDKNYVRTL SICGDKVDGVEHSVDDDAKRTSPPSDAKKRGTSISIVEPDTWDNGCEKKRDFDVPASE DQHAKTNMVNSDLHVLVEAKKKRASSSERSGDKKCSASKEITGMLKKYEPKESKRLVI SSGVATTAAVAEQEVHSRFVKGSVYEGLDGNQNVGLQTGVRSNGVVKRDDAKRSNGDV QSDAAPEKMNEGLDLQKQSNQTSNLLVVGGVPDLQTNQSESLTIKKEASTDDHERTEA IQFVSDEHKSGKQDTAMLSTLQRHSSKLASDLVYQHPKSETQNPMHTIPEHPNSSLEP SSEETTVRLVKKDQTRLVSSADSENDFAKKSESSQDRTRSSDKVQLKGFVPSAPKSSQ GSRTYVSSAKNRFIVPKEQLQKTSTEGNAPPGSLQGEVAPLHSRNKAMPLSFYQRKDK IHHRSIHITQDTSNSSASAELQSTETTASLSDEQLALLLHQQLNSSPRVPRVPRCHQA STMQMLHPTGASVFSKRSSAHGGRDQALVLKKRNKDDAWRDNDETKKTGKVSSVERRH RDSSTERVLAAKDSCKFTENIESEQRNRGICSTGATSGVGNDAPIDRGVSHDLPGLIE EIISKNTNITYGELCNAIRQHWGDLSKPNVENNAYPNYLHAVNDCLRNRNDWAHLVDQ AAMMNPNKRRKVEESDSLSADVLATEKTNKEAKRGPEDTNAESHHEILPRGKRKARKC RRLELKGRRVNDTRKRSSFDSASDDDDTTLSDSSSDRNDTPMDKSLEDSFVIAKNADS SS</aaseq>

Gene Sequence

<dnaseqindica>8183..8530#7271..7393#7119..7189#6794..7046#6386..6541#5846..6300#5384..5767#5227..5296#1214..1533#379..1123#cccctccgcgtcgccgccgtcctctgccgccgccgtcgtccgtgtctcctgtattcctcctcccctttgtgtgggagattgtctgcccaatctctggaatcgacaaggtttggtggtggcaacccgctccggcggctgcctctcgtctctccaccaccccgtcccgccgattttccgcctcgacctggtggtgcagtgctcgattcggcagttcggggcttaccgagggcgcagggtgtcgatgtgcagcccgaggaatcgcatgtaagtatgatttggttacagcaccggttgcatccttgcctcgcttcacccgctcttttgcttgcttagatccgaaggggagtcgaaattagggtttccctctactcgccgccgatgaaggggggccgcttgcaccgtctggagcggccgcccgccgcccacatcaccaccgccgcagccgccaccacgcccgctccggcgcccgccgatgattggggggatggctcgtggacggtggactgctcgtgcggcatcacgtacgacgacggggaggagatggtgagctgcgacgagtgcaacgtctgggtgcacacgcggtgcgcccgctacgtccgcggcgtgcacatctctttctcttgccacaactgcaaggccaagcgcgccccctcctccgccgacgaggctgaggtcgccgagctcctggccgagctgcccacccaccgcccacggccgttgtaccgccgatgggctgaagtccctctcccctcccgtgtccatgtccacgggcttccaggcggtacagacaccgccctattccgcagcgccgcaccctcccctgtattctcgtccgccctatggcgctgtgctgggtacgtacccaagagattcggcttccgctactgcgaattcccctactgggctgatgacaaggacggtgccaacgctctatttgcgctggctagagagaagcgcaaggaaaaggcagagactaggttccctctccgccttggagccatacacaaggacaagaattatgtcaggacgctgagcatttgcggcgataaggtggatggcgttgagcactctgtggacgatgacgcaaagaggacatctccaccaagtgatgcaaagaagagaggtgaataatttggtcaatgcttgttatttatttaattactgcaaaatgaagattcttattagtcatgagttgttggtttgtctattttaggaacatccattagcattgtagagcctgatacttgggacaatggttgtgagaagaaaagggattttgatgtgccagctagtgaggatcagcatgccaaaacaaacatggtaaattctgatttgcacgtgcttgttgaagctaagaagaagagggcttcatcctcagaacgaagtggggataagaagtgctctgcctcgaaggaaattactgggatgctaaagaaatatgaacctaaggagtccaagcgattggtgatatcctcaggagttgcaacaacggcagctgtagcagagcaagaagtgcactcacgatttgtgaaggtagaagttagtgttttctatattcaaactgcttatttcatataatttggattgcactggttcctgacaattagcctactattgattttaatgttcatagttaacctcaccaagttagccatttttctttcatcctaaacttttaaataccacttatcagaaccacattgtattggaactgctaaataggttgatagataagctaccatttgtgcatagtatgggtagaatttcttaatgctggaagcctggaaatggattggaatatggcaatccttttgagctgcataatcttttatccgtacatcagtaaatagtaaatacagtttgaaaaaactactctacaggattagaatcgatcagaaatttcattttcatacatacaacttgctcaatttggtctttgaaagtaacaaaattgtgtttcctcataaaaattttaagggagcaacttggttaaagagacgcatcaataccatggttaagtaaccaagcaagagttagttttatatcctgaattctttatccagcactaaaagttcccatgttcccctttgttaaaacctacattcaatttgctactcctcacggcgcttaagtaaaattttatcccctttgtaacctatttagggtttttggagcagttaggtaagtcgtgcaaagttgtgcccttccttgtagactcctttccattcgttgacgctgatgccaacttgtggctctctcttccttctctccacccctaagatgggagacactcctagttatgcttcccattttgccaatatccatcagatagcgaagctaacctgcagcaacttaactggatctggcacataggcgtagctggtgactggtcgtgcagctctacccacctcacttgagtgcgccaggtggaggtgagtgtgtgtgcatgatacccacccattctactctgtttgtatgtaatttcttgtatgcaagcaatttgatttcactccccacagtagcacaaagggtataaacttggtcagataaactaagcaaggaaactattagaagggcacatgttacagcattccgtttagcaattggatttggccatgtagcagtctatttgatctgcctggtctatcaccaagaagttttaaccttatgccaaagtaattccatgccccaagtaacctatgcctgtattgtcatggaacctgttcattttgagcaggagagatgcatggcagtgagctgcacctgccaatgggtggaggagcagagtggcaaagtcaccagcagacccttgcatggcgaaggtgcaaaccaggcgtgcaccaggtgggggagagcgaagggatggttgaggagtagataaagggcattttttccatttctcaaaaaaactgacaaggccaaaatgccaaacacactaacggtgagttgaactaacagaggtgacctataagggaagtgaaatttcaagtgcatggaaagtaatagtaaattttgagtggcatataaggaaacatgggaactttaagtggcaaggattttttctctttttgtttctgcttttgcctctgtagttcatcattttttttaaatgataacaaaatggtccaaccactatcatatcctcttggtgttagccatgatttaggtatgtttctttgcttacgctttcaagctgtctttttggcctttgtagtttacaaggcagtagtttctaagccacacggccacaggttcaatcataactaactatagtccacaaaagctataaaaaactacttaaatctgaatctggcttattagtacaagagtggcttatagctttgtgaagcccaatagaaagtctgtcttctgggttagacttttctggccgttaataaggataatagaatgggcctctgagttgaactatatcttgctgttcatcaccagtgcttctaccgatcaccaatgaacttcactgctagttagatcacctgttaaattcagttacctctgaaaagcagggaagatccattggggatgcggtgacggtacaaaaacaccaaccctgcccatagacagaagcctaaggacatttcctagcacagccacctctcccgccagatggatagcacatattctttgtgctcctccatgtgaataggaaggttcgtgtggttgcattctgtgtaggtgctgaagggctaggggttttgtgcgtgttgagatgggttgttattgggctgggctaaaattgtgtcctggaatagtatatgtgtatttttcatcttatactttaaatgagataatagtcctatgcatactgttaatgttttagaactgtatcagcatcaaatgcatgacttgggactattgaagctttgtaggctcatatcctccgctagtaatcccatctctcaaaaaattgattccatccttgggctaactctagcttagacggggcaggctggtggctttaggtgccacatgggtgcagcgacttgagatttggatgagactttgaagaaatggctattgggtaggtgtggcaagtatggctcttgactattgtaggtgttggctctgtggaggacctggagtgagtggatttgtaatatcccatgtggcccatatatggttttggtggcattagtccaacatggagaatttatattggttgggaccagcaaccgggtacataaacccacatgttccgaccattaatgcttttacatgagcgatctgaagacaagtgtaatcagatccttttagctatgtatgaactgcttcagtttgtgttggaaaattaataaagggtttcaatttgaatgaaaatattgacacatttagtatgagtaatgattacaaatttacaactttacgagtagttttttctaatatttagaatgggtgcagttgataagtactaccactagtcacagtttgaaatagattattgactgggtctattttagtggattatctacaccattacagatataaattaaatatattgataaataaaattaacaaatactagcttagaacaagggatccaagcaatgcagtagaagaaagtttttagtaaaacatatttttagaggtgtggaattaataatcagcgacaataatatgatgaagtagatgaaaaaaacagagtcttattatgagattttcccaactcagaatagatgtgaagaaacttcatattactttttttttctgctatgttttttttttcttttggtgaaattttgtcatgtccgaaattaattagtaaatgcataaaaggttttctttttgttcattacacattgattcatgattattttgtctacattttgtctctggctacaatgccttttggtatgaaaaagaatggtgcataattatctgacagaaaatcttgtttcttttggcatgtgaattagtattaagattctgaacttctgatacatcactgccatatgaaggcatatggtttataaattttaggttctgacgattgtaatgtaagacagatttatagtttcaagatagacaattttgtgttactaatggaacttctaagaatatttagatatgttcatttcaagaagttaattctttcaatttctgatggcttatcattagtcctgtttctgtttattttttatctatctattgagtaagcttaattactgcaatagttttagtatgtattttaatacattctataatgtgcagggtagcgtgtatgaaggactagacgggaatcaaaatgtaggtttacagactggagtaagatcgaatggaggtaacttaagttcctctggtatgttttgattaatatgaaaaccccttgaaactcactagtgtgacttatgcttggaacattacacagttgtgaaaagggatgatgccaaacgatcaaatggagatgtccagagcgatgctgctcctgagaaaatgaatgagggtctggatcttcagaagcaatcaaatcaaacttcaaatcttctggttgttggtggtgtaccggatttacagactaaccagtcagaatcattgactatcaagaaggaagcatctacagatgatcatgagagaaccgaggctatccagtttgtaagtgatgagcataaaagtggaaaacaagatactgcaatgttatcaacccttcagaggcattcgtccaagttagcatctgacttagtttatcaacatccaaagtctgaaacacaaaatccgatgcacacaataccagagcatccaaactcaagtttaggtaatgtgaaagtttgtacagcatcttctggtcctaactctaccacttttgatttatcttgctctttgctatccacagaaccatcatcagaagaaactactgttcgtttggtaaagaaggatcagacaaggttggtctcatccgctgacagcgaaaatgattttgcaaaaaaatctgagagttcccaggatcgcacaagatcctctgataaagttcaattgaaaggctttgttccgtctgcgccaaaatcatctcaaggaagtagaacatatgtatcttctgccaaaaatagatttatagtgccaaaggagcagttgcaaaagacatcaactgaaggaaacgctccaccagggtcattacaaggtgaagtggcacccttacattctcgtaataaggcaatgcctttgagcttttaccaaagaaaggacaagatccaccaccgctctattcatatcacacaggacacttccaatagttcagcatcggctgagctgcaatctactgaaacaacagcttcattgagcgatgaacaggtacggacacaataagttctccaataatttatatgtatgctgataaaattttatttttttctcatggtttcttgattttctgtagcttgcattgttattacatcaacaattgaacagctcccccagagtaccaagggtgccacgttgtcatcaagcatctaccatgcagatgctacatccaactggagctagtgtgttctcaaaacggtcttcagcacatggaggaagggatcaagcactggtaagatcactattacttcctccgtttcacaatgtaagactttctaacattgatcacattcatatagatgttaatgaatctaaacatatatgtgtatctagattcattaacatcaatatgaatgtgggcaatgctagaaagtcttacattatgaaacggagggagtactaccaaaggtcatcttttctatttctatttcaatatttcttccatctttatgtgaaaacttatgaagcttccctgtaagtgcaggtcttaaagaagaggaacaaagatgatgcatggagagataatgatgagaccaagaagacaggaaaggtgtctagtgttgaacggaggcatagagatagtagcacagaacgtgtccttgctgcaaaagactcatgcaaatttactgaaaatatagaatcagaacagagaaatcgtggcatttgttcaactggagccacctctggcgtaggaaatgatgctccaatagatagaggtgtttcacatgatttacctggtatgtaactcataccatctggttttattcagtatagaagtcaataagggtgccttattattctatctgcagggttgattgaggaaatcattagcaaaaatacaaacataacatatggtgaactgtgcaacgctattcgccaggtatgttttatttcaatttcatgtatatttattctgtatgtttcataatttgtgctaattttattattatgtttctttcagcattggggggatttaagtaaacccaacgtggaaaacaatgcataccccaactatttacatgctgttaacgattgtcttaggaacaggaatgactgggctcaccttgttgaccaggctgcaatggtgagatctcgactttcatcctttccttttcattttgtcgacagttgtaattccttctgagtattgtggttacatgaactgatttgtgcctccttagagcttagatgatggttgatttcattttatatcttttagcatgtgtggttgagtcacttggtacattcaatgctatttgctaaatacagttgcatcttcaaataaaattttctgcttgctcatggcatgtaattcttaggtgccagctaaaggcgtatgcttgtcttctggggatcttagtgaactaataaaattttcttcatacagttttattcatttgaataaagaaaaccttttaggtcgttttgctatgcattttgtacaaatgtaccctctcaaaaatttattccatgaatggacccctggctcagcactagcctcaaaggagttgtactgtaatgtctcagccattcttataggtgctgagttgtcggctgcactaacatgacagtcagatcagcagcacgtcagtgccagtgagcttggtgttgacatgcacaaggtcaactccggacctcctggtgctgatctgtcagaatgctgcaatcttggcactggtcgtgtgccaaaaactcagcaccagttagttattcgaatgacccaagttattcctgtcaacctattaaacttattattaactacctggttttgcatactcgtaactaaggaaaccacctgcattcagctctatgcaaacattgggagttctgtttggtttgatggttaaaagttatttaacttgttttgtttcagatgaatccaaacaagcgccggaaggtagaggaaagtgactctttgtcagcagatgtactggcaaccgagaagacaaataaagaggctaaaaggggtccagaagacacaaatgctgaatcacaccatgaaattctgccaaggggcaaacgcaaggctcggaaatgcaggcgtcttgaactgaaagggaggagagtcaacgatacgaggaagagatctagctttgattcggcctctgatgatgatgataccaccttgtcggattccagtagtgacagaaatgacacccctatggataagagcctagaagatagttttgttatagctaagaatgcagattcaagttcatagaggtggttcaatgcagtgctgctggcaatacattcgaatggagttggtgaagaaagtcagatttagcgaccgcagatcggttcacttgtaagttgtaacagtagtgtaacatagttaatccttttctcgcctaactgtaatgcaggtagatttgttgaagtagcgtatcatgtaagcaatttgcaatttgtagcgtctgatgattgcgcccaaaataacaagcattatgtgtatcagcgtatctagttattttgtggcggattggttggtaacctaagcaaaaaatgtctacgaaactgcaattgaac</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0221600, RefSeq:Os04g0221600