Os04g0278000

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Revision as of 11:02, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os04g0278000| Description = Similar to PRLI-interacting factor G (Fragment)| Version = NM_001058891.1 GI:115457511 GeneID:4335358| Length = 3198...")
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Gene Name

Os04g0278000

Description

Similar to PRLI-interacting factor G (Fragment)

Version

NM_001058891.1 GI:115457511 GeneID:4335358

Length

3198 bp

Definition

Oryza sativa Japonica Group Os04g0278000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:11792049..11795246

Sequence Coding Region

11792218..11792889,11794050..11794961

Expression

GEO Profiles:Os04g0278000

Genome Context

<gbrowseImage1> name=NC_008397:11792049..11795246 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:11792049..11795246 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcggacgcggcgcaccacctccgccgccgcagcagcgccgcgctcccccgcggctggtgctgctccttctccgccaccccgcagagccccgaccaccaccgcccgctctccgccgcgtcagcggcaggaggagagggcgtcggcggcggcggcgcgcgcggtaagctcccgcccaagtcgccctcggtctcgctgccgtccttccagagctccccgtcgtctaggctcgcgggcttcatcgacccccgccgcattctctcccccggccgcgtctcccccatagaccccgacggctcgccggcggtggcggctggggcgaattcggaggaggatgcgacgccgaggccgtcggtgccgttcgtggcggtgcgtgaagagcgggaggaggaggaggggagagggctggatctgaagctgtgcctccgtggtagggacgggaggagcgtggcgatggagctggactccgccgtgctctgcgagagcagcgccttcttcgcggccatggcgccgccgccggaggccactgtcggcggcgggagcaagaggattgaggtggatggggtggagaacgtggaggcgttcaaggagaccgtggagctcatgttcgaggccgatcccatgcggtggttcgtcagggccggcgtgtcacgagcaataggcgtgctcgaggtatcttcctctataatgtttgacagaggaatcaaatcatgtttggagtatattgaggcagttccatggaatgagaatgaggaagagaagctgaagaacctctttgctagatgtactttcgatgaagcagtatccaaagatgtactggcaagattaaaaccacaatgccagagcatctcagacgatgttacagttcacctcatccaatctgtcacaagcagcaccaacactggtgcaagaaaagagatgcaatctttagtcaatggtcttctcagtagaagctcagtctatcaaaaagatttgtctgggctaaacaaaggtagcctttaccagatttgttgttcctgtttgaattcactagtggagcattttacggaagacctctgctcggacaaaattgttagagatagtaagcctatgatcgaaagagtcagtaagcaaaccgagaacctcaactggctctttgatattcttgtgaacaatgatatggcagaagaatttgttgagttgtgggctaagcaggaagatctcatcagcatgcatgggcaagcatcagcaatgttcaggtacgaattaagtcggatatcagcgaatgtgtttattgtcctggggaaagggaaagttcagtgccccagcgatttgaggagccaattgttctacggatggtttcggcccatgttaatggattttggttggcttcaaagatgctccaaagggttagatatgagaatgttggaggagaatctcgggcaagcgcttctcactcttccactccagcagcaacagagcctatttgaagaatggttccaatgcttcgcatccaggggcacagagtgcccgaatcttagtagagctttccaggtatggtggagaagatcatttgtcagatcatccctagagtcacgtcgttga</cdnaseq>

Protein Sequence

<aaseq>MADAAHHLRRRSSAALPRGWCCSFSATPQSPDHHRPLSAASAAG GEGVGGGGARGKLPPKSPSVSLPSFQSSPSSRLAGFIDPRRILSPGRVSPIDPDGSPA VAAGANSEEDATPRPSVPFVAVREEREEEEGRGLDLKLCLRGRDGRSVAMELDSAVLC ESSAFFAAMAPPPEATVGGGSKRIEVDGVENVEAFKETVELMFEADPMRWFVRAGVSR AIGVLEVSSSIMFDRGIKSCLEYIEAVPWNENEEEKLKNLFARCTFDEAVSKDVLARL KPQCQSISDDVTVHLIQSVTSSTNTGARKEMQSLVNGLLSRSSVYQKDLSGLNKGSLY QICCSCLNSLVEHFTEDLCSDKIVRDSKPMIERVSKQTENLNWLFDILVNNDMAEEFV ELWAKQEDLISMHGQASAMFRYELSRISANVFIVLGKGKVQCPSDLRSQLFYGWFRPM LMDFGWLQRCSKGLDMRMLEENLGQALLTLPLQQQQSLFEEWFQCFASRGTECPNLSR AFQVWWRRSFVRSSLESRR</aaseq>

Gene Sequence

<dnaseqindica>170..841#2002..2913#gtgagtccaagagctcagtagaataacctcctccttacttgtaccgcgcgagctagcgaaaatcctcctcccatggccgcggcctcctcgactacctcgtcctcctccgcctccaaaccctagatcgccccccacctacctacctacctaccgcacggagacccctcccatggcggacgcggcgcaccacctccgccgccgcagcagcgccgcgctcccccgcggctggtgctgctccttctccgccaccccgcagagccccgaccaccaccgcccgctctccgccgcgtcagcggcaggaggagagggcgtcggcggcggcggcgcgcgcggtaagctcccgcccaagtcgccctcggtctcgctgccgtccttccagagctccccgtcgtctaggctcgcgggcttcatcgacccccgccgcattctctcccccggccgcgtctcccccatagaccccgacggctcgccggcggtggcggctggggcgaattcggaggaggatgcgacgccgaggccgtcggtgccgttcgtggcggtgcgtgaagagcgggaggaggaggaggggagagggctggatctgaagctgtgcctccgtggtagggacgggaggagcgtggcgatggagctggactccgccgtgctctgcgagagcagcgccttcttcgcggccatggcgccgccgccggaggccactgtcggcggcgggagcaagaggattgaggtggatggggtggagaacgtggaggcgttcaaggagaccgtggagctcatgttcgaggccgatcccatgcggtggttcgtcagggccggcgtgtcacgagcaataggcgtgctcgaggtgacaaattgcgcatccttacctttttttttttctgttgctgtttcgttgagtttcgcatcgaggaccatacgcatgtggccatgtagttgtggaaattgcattcttcacgttcgtactgcgggttaatatggttcaatttcgatggttttgtggtagattcgtgaacgtaaacatgtactattaactgtgcagtatgtacatccatgtttttaactgaatttcttaccgatgattgcattttctgtgaaaaccagtgagttggtattaatcttctagtgcctactaaaatctcgttagggatgacaccattttgggagtgcaactcatactagctcagtagttcttttagttgatacgaagatagtggtatgaccaataggatttaatgttcattttatacaacttgtgctgtgatgacagcaattaaatgagactagctaactaattatatcaacaattaaatgaactacctaattaatatatttcatactagggcagcagttttataattattgtaccatgatcgctataaggttatgcctttttctattcaatcagcaattgttgctgtgtgcaattatagtactccacaacgggtcaatggactcataaacttctattgcatgtacacctatagtcgaagccttgaaggatatgaactgaagcacattgagtgtagtaagtacggcataaagtcatcaggaaaatagttctaataataaaaaatggaaattttaggacaattgcaatctttgtcatgcatagttaaggatacccacaacttagattattttgacaatttattttggtgtctttttttgtccttagctgctgatggctaccctgcactgcagactgttagtggtctccagttaaaggtgaggtgtctgttccagggtagctcagcaattgagcacgccattaagagggttcagatgtccatattaatacttgaacattgctatcagagcatgaatagtacatatttactcttagtaccatatttatagtttcttcttgatttaattttatattgtactagttcggctgcacttgatagctgctttgttgaagccagcggctgtacaacgcagacaaacatgcccattatcatctgattatgggtcccataatccttactacatcttgaattgcaggtatcttcctctataatgtttgacagaggaatcaaatcatgtttggagtatattgaggcagttccatggaatgagaatgaggaagagaagctgaagaacctctttgctagatgtactttcgatgaagcagtatccaaagatgtactggcaagattaaaaccacaatgccagagcatctcagacgatgttacagttcacctcatccaatctgtcacaagcagcaccaacactggtgcaagaaaagagatgcaatctttagtcaatggtcttctcagtagaagctcagtctatcaaaaagatttgtctgggctaaacaaaggtagcctttaccagatttgttgttcctgtttgaattcactagtggagcattttacggaagacctctgctcggacaaaattgttagagatagtaagcctatgatcgaaagagtcagtaagcaaaccgagaacctcaactggctctttgatattcttgtgaacaatgatatggcagaagaatttgttgagttgtgggctaagcaggaagatctcatcagcatgcatgggcaagcatcagcaatgttcaggtacgaattaagtcggatatcagcgaatgtgtttattgtcctggggaaagggaaagttcagtgccccagcgatttgaggagccaattgttctacggatggtttcggcccatgttaatggattttggttggcttcaaagatgctccaaagggttagatatgagaatgttggaggagaatctcgggcaagcgcttctcactcttccactccagcagcaacagagcctatttgaagaatggttccaatgcttcgcatccaggggcacagagtgcccgaatcttagtagagctttccaggtatggtggagaagatcatttgtcagatcatccctagagtcacgtcgttgagagttgagttcacttgtctgctgatatataatcttgtgtgtatcaatgtaaaattagagttcttgtattagcttgtagaatattcttcttaataaatctagcttagctgcttccattatatgcaacaatgtaagcataaaactggccaagaaaaaaaaactagaagatatgtagcaatttggatatcgtttgccttgaagatggcatcactgtacatgatcttattcctgggaaaaatatacaaactgcaccagggagtgtgtagcccttcccatgtttcatact</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0278000, RefSeq:Os04g0278000