Os04g0348400

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Revision as of 11:05, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os04g0348400| Description = U box domain containing protein| Version = NM_001059057.2 GI:297602508 GeneID:4335543| Length = 3049 bp| Definition...")
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Gene Name

Os04g0348400

Description

U box domain containing protein

Version

NM_001059057.2 GI:297602508 GeneID:4335543

Length

3049 bp

Definition

Oryza sativa Japonica Group Os04g0348400, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:16611764..16614812

Sequence Coding Region

16611764..16612849,16614519..16614812

Expression

GEO Profiles:Os04g0348400

Genome Context

<gbrowseImage1> name=NC_008397:16611764..16614812 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:16611764..16614812 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcgaagccggcgccggcgccggcggccggggcgcgggaggacgaggacgcgccggcgctgcggaggcgcctgcgcaggctcgtggcggcggccaccgccggcgccgcctcggagtccgtgctcgacgaggccgccgcggcgctcgcggcgctgcgggatgcggaggtcggcgtcgggaggaagggcgtcggaggaggagaggaggcggccgccgccgccgtcccggcgctgttcctgtgcccgatctcgtccgggatcatgagggaccccgtcgtcatcgagtccggacagacctatgatcgtcgttccattcaggagtggtttagtgcaggaaaccagatatgcccgcagactcaacaagtgctctcacacacaattgtcattcctaaccaccttgttcgtaccatgatctcacagtggtgcacagaaaatgggctcactctgccagaaattgagaaccaagaacaagatcatgttaccaacagtgaggagaaaacatttgatgaaatatttgtcaaaataacttcctcagcaaacagtggtggacggaagcaagcaatcaaggatcttcggcttcttacaaaacgtaacagcgaattcagagctgttttaggacagagaccagattccatcgcacagatgatcttggcacggtccaccccaggattacagaatgatccacaggtattggaggacatggtgactataattctcaacttttcaatccatgatagcaataagaagatcattggagatgattcagaagccatccaatttctcatatgggcactgaaatcgggagatatggggagccgtagcaactctgcagctgccatctttactctgtcagctctcgactcaaacaaggagaagattggcaagttaggggcaatggatcctttgattgatctccttgaacatggcagcatcatagcgaagaaagatgcggcatctgcgattttcaatctttgtctgctccatgagaacaggtcaatagccgcaaggagcggaattgtcgatgtggcgatgagagccatcgatgatcagtcccttgttgaggagtccttagctatacttgctttgctatcaagaaatcaagagatggtggagatcatcaccgagttcaacggtaccgcttccatgctccgttcgataagggagagtgagtgcaagcgcagcaaagagaacgcgatggtagttctcttcgctatatgtacatacaacaggacaaagctgaaggaggtcgaggcagatgagagcataaacggctccctcacttttctcgcacaaactggcactcaaagggcaaggaggaaagcttctgggatccttgagaagatgaagaggacgatgcacaataggcattgttcatgttag</cdnaseq>

Protein Sequence

<aaseq>MAKPAPAPAAGAREDEDAPALRRRLRRLVAAATAGAASESVLDE AAAALAALRDAEVGVGRKGVGGGEEAAAAAVPALFLCPISSGIMRDPVVIESGQTYDR RSIQEWFSAGNQICPQTQQVLSHTIVIPNHLVRTMISQWCTENGLTLPEIENQEQDHV TNSEEKTFDEIFVKITSSANSGGRKQAIKDLRLLTKRNSEFRAVLGQRPDSIAQMILA RSTPGLQNDPQVLEDMVTIILNFSIHDSNKKIIGDDSEAIQFLIWALKSGDMGSRSNS AAAIFTLSALDSNKEKIGKLGAMDPLIDLLEHGSIIAKKDAASAIFNLCLLHENRSIA ARSGIVDVAMRAIDDQSLVEESLAILALLSRNQEMVEIITEFNGTASMLRSIRESECK RSKENAMVVLFAICTYNRTKLKEVEADESINGSLTFLAQTGTQRARRKASGILEKMKR TMHNRHCSC</aaseq>

Gene Sequence

<dnaseqindica>1964..3049#1..294#atggcgaagccggcgccggcgccggcggccggggcgcgggaggacgaggacgcgccggcgctgcggaggcgcctgcgcaggctcgtggcggcggccaccgccggcgccgcctcggagtccgtgctcgacgaggccgccgcggcgctcgcggcgctgcgggatgcggaggtcggcgtcgggaggaagggcgtcggaggaggagaggaggcggccgccgccgccgtcccggcgctgttcctgtgcccgatctcgtccgggatcatgagggaccccgtcgtcatcgagtccggacaggtgagtccgccgccgagcacctcacctcacctccattaattctttgcttcatttcatctttttttttttggggggggggggtgggggggggttccttcgttcgattgactgcgccgtcggtgccaacaatcctgcggctcacctcgtaaacgcggtcaatttctgctctcgatcggctatcacccaccaagcattcttccattcagttcttgggcagcagcacaaacgtcgtggtcgttcttgcgttagttcgattcaaccaaccgcgccgcatttggtgaacgattaacgcactgttcgtccctcggaatccgtgtacgtggttcgtcctgtgtgaaatcgatggtactttttttcccgccgggagtacatcaaacatgattgctgccgattcttgctccaatcagtgcgaagatgtgccgtgtttggggcttccaaattgttaggttcttttgtctgtttaccactgtttgtggttacagcaaatttgttagttggaagctattgaatatgtggtggtcaacagaagagctgtttgtagctgtacttgacaatgccttgagtaggtaaagctgcagagcaactgcaattgtcacatttggtacatttagaggtccctaatattaggatcttaattatatttgtttagtacagtttgttgctagtacaggaaattgaaagcggtactctctcggcgaatgtttgattcatgattgatggtagatctgcgtggatatggagggattagtacctgtaatccgcatctccaattttagaatagttttaattcgttctttggagtatgtgaatcgaagagtttcaattttcacatttaattgctgttgtgatgggattcccgtaaaagattcggatgttttaaagatggatttggttccatttaaaccctgtaattgtcacataatggagttggtttgctttctttacatgcgaaacgtgtgaattgaatggttattgaggcaaaaaaatttatgtctagtacttgtttggtaagtattagttacggtattatcttatatattcactccacaacatgcagaattacctaaaggtttagcatggtttccgttgcttcatgcataaatgaatgagatatgtatgttttaaacactgaaattttcataagtggatggagcactttgcatgcgttctaaaaaccaaatttggccattgtattgaccaatatttgttagtatgaaaattttatgaaattatatagtatggcattggtacttatatgaagttgcagtaatggcatactgattgtactggaattaataatattatgacatacatttggatcgtgtagtgtgaagtctggatcttgtatattattttggctagtcagttccatgctattggtgtgttttctgtcactacttgcctttatgagtaccgaggtgaatttttactgtttaaatatgctgatatgatgaggttctctaggaatatggagcaaaatagtaagtcaacaaatatggtaaggaaatagctacgtataacttgacaacattgggggaaaatcaccagagttaataaacaagtggatggtttcaaagtgttaggtttaaatttgacatcgccacattaacaactagaacaagaacctagagacgttatccaactgatctttatttcttgttccatgcagacctatgatcgtcgttccattcaggagtggtttagtgcaggaaaccagatatgcccgcagactcaacaagtgctctcacacacaattgtcattcctaaccaccttgttcgtaccatgatctcacagtggtgcacagaaaatgggctcactctgccagaaattgagaaccaagaacaagatcatgttaccaacagtgaggagaaaacatttgatgaaatatttgtcaaaataacttcctcagcaaacagtggtggacggaagcaagcaatcaaggatcttcggcttcttacaaaacgtaacagcgaattcagagctgttttaggacagagaccagattccatcgcacagatgatcttggcacggtccaccccaggattacagaatgatccacaggtattggaggacatggtgactataattctcaacttttcaatccatgatagcaataagaagatcattggagatgattcagaagccatccaatttctcatatgggcactgaaatcgggagatatggggagccgtagcaactctgcagctgccatctttactctgtcagctctcgactcaaacaaggagaagattggcaagttaggggcaatggatcctttgattgatctccttgaacatggcagcatcatagcgaagaaagatgcggcatctgcgattttcaatctttgtctgctccatgagaacaggtcaatagccgcaaggagcggaattgtcgatgtggcgatgagagccatcgatgatcagtcccttgttgaggagtccttagctatacttgctttgctatcaagaaatcaagagatggtggagatcatcaccgagttcaacggtaccgcttccatgctccgttcgataagggagagtgagtgcaagcgcagcaaagagaacgcgatggtagttctcttcgctatatgtacatacaacaggacaaagctgaaggaggtcgaggcagatgagagcataaacggctccctcacttttctcgcacaaactggcactcaaagggcaaggaggaaagcttctgggatccttgagaagatgaagaggacgatgcacaataggcattgttcatgttag</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0348400, RefSeq:Os04g0348400