Os04g0373400

From RiceWiki
Revision as of 11:05, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os04g0373400| Description = Multi antimicrobial extrusion protein MatE family protein| Version = NM_001059108.2 GI:297602569 GeneID:4335602| Len...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os04g0373400

Description

Multi antimicrobial extrusion protein MatE family protein

Version

NM_001059108.2 GI:297602569 GeneID:4335602

Length

3803 bp

Definition

Oryza sativa Japonica Group Os04g0373400, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:18233933..18237735

Sequence Coding Region

18234041..18234301,18234787..18235335

Expression

GEO Profiles:Os04g0373400

Genome Context

<gbrowseImage1> name=NC_008397:18233933..18237735 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:18233933..18237735 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcggcgccaccaagcatggaggagcctcttcttggaggcggcaatggcgaggagaagaaaggagggagctcgaggctagcggtggtggccgaggtgaggaagcagctgtacctcgccgggccgctcatcgccgggtggctgctgcagaacgtggtgcagatgatctccgtcatgttcgtcggccacctcggcgagctcgagctctccagcgcctccatcgccacctccttcgccggcgtcaccggcttcagcctcctggctggcatggcgagcagcctggacacgctgtgcgggcaggcgttcggggcgaagcagcaccggctcgtgggcgtgtacaagcagcgcgccatggtggtgctcggcctcgccagcgtgtgcgtcgccgcggtctgggcctacaccggcgagctcctcctgctgttcgggcaggacccggagatcgcggcggcggcggggagctacatccggtggatgatcccggcgctgctggcgtacgggcccctgcagtgccacgtccggttcctgcagacgcagaacgccgtgatgccggtgatgctcagctccggcgccgccgcggcgtgccacctgccggtgtgctggctgctggtgtacggcgccgggctcggcagcaagggcgccgcgctcgccaacgccgtcgcctacctcgccaacgccgccgccctggccgcctacgtcaggctgtcgccagcgtgccggagcacgtggacggggttctcgtcggaggcgttccacgacttggtcggcttcatgaggctcgctgttccttctgctctcatggtctggtaa</cdnaseq>

Protein Sequence

<aaseq>MAAPPSMEEPLLGGGNGEEKKGGSSRLAVVAEVRKQLYLAGPLI AGWLLQNVVQMISVMFVGHLGELELSSASIATSFAGVTGFSLLAGMASSLDTLCGQAF GAKQHRLVGVYKQRAMVVLGLASVCVAAVWAYTGELLLLFGQDPEIAAAAGSYIRWMI PALLAYGPLQCHVRFLQTQNAVMPVMLSSGAAAACHLPVCWLLVYGAGLGSKGAALAN AVAYLANAAALAAYVRLSPACRSTWTGFSSEAFHDLVGFMRLAVPSALMVW</aaseq>

Gene Sequence

<dnaseqindica>109..369#855..1403#tcacaaccttcagtaagtagttcacctcatctgtaattgtaaacacactcatctttctgtttgaagttgagaagcagagcaagaagctaagcttgggggggcgtggccatggcggcgccaccaagcatggaggagcctcttcttggaggcggcaatggcgaggagaagaaaggagggagctcgaggctagcggtggtggccgaggtgaggaagcagctgtacctcgccgggccgctcatcgccgggtggctgctgcagaacgtggtgcagatgatctccgtcatgttcgtcggccacctcggcgagctcgagctctccagcgcctccatcgccacctccttcgccggcgtcaccggcttcagcctcctggtacacacaccagcccttcctcaaatatacggttcttcagaaagtaactcgagatatctaaactttacactaagttttttggagtatctgaagatatcaaattttatatttcaaaatttggtacttcttaataccttctataaaattacctaacatcgaaacctaatattcattcctgacatgatattgaattcgctccccatcttggtacgtgttcgatctgttcatcatccatggtatgatggcatgatatcttgagaaagtaccttgaagcacttaaattttacactaaaatttttatttcctcaatatacttaatacatggagttatcaaattttatattcgaaatcttctcgataccttgagctcaaagatgataaaattacccatccccaaaacctcatcttcattcccaacaacataatattgaatttcgttgacatcttggtacgtgttcgatccggttcatcgtcaattggtataggctggcatggcgagcagcctggacacgctgtgcgggcaggcgttcggggcgaagcagcaccggctcgtgggcgtgtacaagcagcgcgccatggtggtgctcggcctcgccagcgtgtgcgtcgccgcggtctgggcctacaccggcgagctcctcctgctgttcgggcaggacccggagatcgcggcggcggcggggagctacatccggtggatgatcccggcgctgctggcgtacgggcccctgcagtgccacgtccggttcctgcagacgcagaacgccgtgatgccggtgatgctcagctccggcgccgccgcggcgtgccacctgccggtgtgctggctgctggtgtacggcgccgggctcggcagcaagggcgccgcgctcgccaacgccgtcgcctacctcgccaacgccgccgccctggccgcctacgtcaggctgtcgccagcgtgccggagcacgtggacggggttctcgtcggaggcgttccacgacttggtcggcttcatgaggctcgctgttccttctgctctcatggtctggtaagtttcttttacttaaaaaaataaattttatagtactttttttttattacacgatagatgtacacgcgcacacaacactcaacacgcaacacacacacacaaaaggagagattcggaggtagagatgttcttcaaactatttttaagaaggaattgtaagcaggttgggggctaaacatgggacctcagaattgaaaccacacatcccttaccaattaccactgtattatcaagtgcatctctaagcacataacaccatactcacgaaattttatagtacttgagaaaatacctatggatatcaaaattttggactgaaaaatttagtaacaggagatatcaggttttataggagtattagaaaatatgatacattttggtaccttgttaagaacggtaaaattactctaagaaaactattgtgctagtcactctgagttcaggtaaatttcgttgtctcatgtcgaatttagctgaaatttgcatgttttgtagcttggagtggtggtcgtttgagctccttgtgctgctctccggactactcccaaatccgaagctggaagcatcagtattgtccatttggtgagtgatgttttcatgatttggtcacacattctgcatccagtttgcctcctctgatcgtgtaccactgaatttcctgcagcctgaactcgggttccttggcattcatgatccctttcggccttggttcagccataaggtcagatatattgatcaaatcaaacaccttatcataaacattgctttcaatttattgtttttcttttcatcaaaacaactgttcatgaacttttacaatgacaaattaacgacatcacaatgccctgttcttcgtgatctctctcagcacccgggtctcgaatgagctcggcgccggtcgacccgaggcggcccgtctggccagccgtgtggtgatggcgctgggtctcgtcgtcggcgtcgcgatcgggctcgccatgatcctggtgcgccatctatggggttacgcgtacagcaacgaggaggaggtggtccagtacgtcgcgaagatgatgcccattcttgccgtctcgttcctcttcgatgacctgcagtgtgttctgtcaggtcagatgatcgatgctcgatctcaaccaaaaaaattgaaaacaaaatgcatgtgattgagagactattgtctgagttttttcacgcgttaatcggttcttttcatatccatctatttatgattgatttgtatatatggttgttaacaaacatattatccccaagaaaatgactgacagtgagggattcttcaggtgttgcaagaggctgtgggtggcaaaagattggtgccattgttaaccttggagcgtactacctcgtcggaattccagcggcgctgtgtttcgccttcgtctaccatcttggtggcatggtaattctactgctcacataagagaaagcattacctcaattctgtcaacattttggttggctatttcttagatatgggacctggaatataagttttcatataatctttggccgtgtatattcacttatggatacagaggcttgattactatccattatctaaaagaaatcggtctctgttttgagcagaagaaattgacctctgaacaatatatatgcttccaaacttgcagggactgtggttagggataatgtgtgcactcatcgttcagatgctgttgcttctagccataacagtgtgcactaattgggagaaagaagtaagcaaaatcattcagaacttcttgcatgcgtcacatgtatactgttattttttctgtcagcttgtcattacggtttcttgatgatgtggcctgtttttgtcttgtgtctttccataggctctgaaggccaaggagagagttttcagttcgtccttgcccgcagacatgacatgataatacaatgtacacgatccaagaaccaagatgaagatcgatggacgattttgtttggcaatagtggccaagaaattctacgagacaatgggaaattacagcttgagaaattaagaccgtcatctctatgttttgatgacacaattaatagtcgccaaaacaaggaactatctgcaaggaagagttcagacagcgagaaatctgcttttggtggattttttgtcagacgaagaaataaaatgttatggactagagacgctgcattggatacaataatgaattgaaatgttcagttaactatatgtaatggatgttaggatttcgacaatgacactattttggctctactattgattagatgattaattatattgtaagtattatgtgacatgcgccattgagtcatgattcatgataccttttctcctaaacgaaatacatcttcttttgcttgtaaatatgcaaatataaagttttttttttct</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0373400, RefSeq:Os04g0373400