Os04g0391000

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Revision as of 11:07, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os04g0391000| Description = Conserved hypothetical protein| Version = NM_001059179.2 GI:297602618 GeneID:4335680| Length = 5212 bp| Definition ...")
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Gene Name

Os04g0391000

Description

Conserved hypothetical protein

Version

NM_001059179.2 GI:297602618 GeneID:4335680

Length

5212 bp

Definition

Oryza sativa Japonica Group Os04g0391000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:19261732..19266943

Sequence Coding Region

19261732..19261896,19262492..19262617,19262721..19262831,19263046..19263794,19264149..19264282
,19264710..19264855,19265281..19265451,19266092..19266943

Expression

GEO Profiles:Os04g0391000

Genome Context

<gbrowseImage1> name=NC_008397:19261732..19266943 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:19261732..19266943 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgaggcgccgaaacctaatcatcacctccgactccgactccgacgacggcggcggcggcggcggcgcggccaccgcctccacccccgcgtccgcctcggcgtccgcctccttcccgagcgtaagcggcggcggctgcggcgatggctggccctcgccgcaaaaccctaggtcagtccccgttcagttcccctccccgtcctcgcctcccccttcccctcccatagagatttccgatgaggaggaggcggaggcggaggtggtggtggaggaggaggaggtggtggtggtggaggacgaggaggaggagtatgaggaggtggaggagatcgaggaccccgatggggactcccccttcgtcgacgcccccgagcacatctcccctccgccgccccctccgcctccggcgcgaacgccgatgccgacgccgacgccgaccccgaccccgaccccgacccgaccccccgttcccgtgtgggctgcccctcttccggcccgaaccccaactcctactccatctgcgccgccccgagccgcggcgccatcccctgcgggaaccccgtcgccgtccccgattccgccgtcgagcaccccggtgtctgcgctgagcgggccgctgcggcaggtggacgagttcctgagggggctcgggctgcggctgcgcccggagtggctcgagtcctgcgccgccggggtacccgggttctacggcctcggcggcgtggaggcgatggccaggcggtgcttcgagcagttcctcttcgccgacatgaacgcgtgcggcgcgggcgtgctcccggagggcgttgggagcatgcacaacgccgtcctcgatggccccctcgtgctgcaggttgatgagattgtcaacctgtcagctcctttaagggaaagatatcgtgatgcacatgcggggcccaaaagatgtttaaagttatcaatgacagatgggatccaacgcatatatggaatggaatacaggccgatcaaagacctggaagttcttgcccctgctggttttaagattgttataagaaatgtgcacataaggagaggcctttttatgctggtgcccgaggtcattgagattcttgggggtgttgatgatgaactggatgaagcacgtaataggcttgtttctgaagtaaacaaaccgccacgtggcaaaaggaaacaaggtggattaccattgtcttcgagagccactctagcagcctggccaacaaatgccaatgctacaaatgatgccgagcaaggagcctcagtgccaagaacagtgaatacccctcatccaaccagattaggtaatgcttcccatgcttctcaggttggtagaactacacaacctatggtggacaatcttatccctcatgttgtagtaagcaatgcccaagagcaaagccgacatatccaagaaatcaccatgcagggccaacctacttctcttaataggcacaataaagaagcttctgcatcatatagatataatgcccaatgcagcattagtggaactacacgagctatggcagacgaacatgttttagtaagcaatgcccaagagcaaagcccgcatatccaggaaatcaccatgcaggaccaatctacttctcttaatgggcgcaataaagaagcttctgcatctacttcttatagatataatgcccaatgcagcattagtggaactacacgagctatggcagatgaacgtgttgacccttcctttgttggtaataacgtacatgaacaaatgcaacgtgttcaaggtatcaccatgcaggaccacattagtgcttctagtgagagcaaaagggaactttctgtgactaccccttctggatatgattcccgacttgcgccacatggtgttggcaatactggcacaagaagtggggaagccacacgatcttcaaatgtggatgatgggatcaataacattgggcatccgatcagtctatgtggcgaaaatgaaaagccttttacttacatattcaacatgttagctgattggggtgttcaacaggatacagtaccttatattcaaggaaaaattaagggtttgatcacttctgtcaaacggtttcaatacaagcaatccatgcaatacgatctttatgtctacatagatgatggtagttttattacagaggcctttgttgaccgtgatattgtacagaacatgattggcctttccgctgaggagcttgcagctgctctttcttctggtggcccagcacaagccaatataagaaaaactatgaaagcatttgagcatttcctggtgaactttgagggcacaatccttattgagctcaacagagattcttctgttcctattgtacgtgagatgaataaaggttgttcaagttcggatgcgtggcagctgcttcggagggtgaaaacattttctggtcagggctacatgcggagcctggattttatggacaccactccatga</cdnaseq>

Protein Sequence

<aaseq>MRRRNLIITSDSDSDDGGGGGGAATASTPASASASASFPSVSGG GCGDGWPSPQNPRSVPVQFPSPSSPPPSPPIEISDEEEAEAEVVVEEEEVVVVEDEEE EYEEVEEIEDPDGDSPFVDAPEHISPPPPPPPPARTPMPTPTPTPTPTPTRPPVPVWA APLPARTPTPTPSAPPRAAAPSPAGTPSPSPIPPSSTPVSALSGPLRQVDEFLRGLGL RLRPEWLESCAAGVPGFYGLGGVEAMARRCFEQFLFADMNACGAGVLPEGVGSMHNAV LDGPLVLQVDEIVNLSAPLRERYRDAHAGPKRCLKLSMTDGIQRIYGMEYRPIKDLEV LAPAGFKIVIRNVHIRRGLFMLVPEVIEILGGVDDELDEARNRLVSEVNKPPRGKRKQ GGLPLSSRATLAAWPTNANATNDAEQGASVPRTVNTPHPTRLGNASHASQVGRTTQPM VDNLIPHVVVSNAQEQSRHIQEITMQGQPTSLNRHNKEASASYRYNAQCSISGTTRAM ADEHVLVSNAQEQSPHIQEITMQDQSTSLNGRNKEASASTSYRYNAQCSISGTTRAMA DERVDPSFVGNNVHEQMQRVQGITMQDHISASSESKRELSVTTPSGYDSRLAPHGVGN TGTRSGEATRSSNVDDGINNIGHPISLCGENEKPFTYIFNMLADWGVQQDTVPYIQGK IKGLITSVKRFQYKQSMQYDLYVYIDDGSFITEAFVDRDIVQNMIGLSAEELAAALSS GGPAQANIRKTMKAFEHFLVNFEGTILIELNRDSSVPIVREMNKGCSSSDAWQLLRRV KTFSGQGYMRSLDFMDTTP</aaseq>

Gene Sequence

<dnaseqindica>5048..5212#4327..4452#4113..4223#3150..3898#2662..2795#2089..2234#1493..1663#1..852#atgaggcgccgaaacctaatcatcacctccgactccgactccgacgacggcggcggcggcggcggcgcggccaccgcctccacccccgcgtccgcctcggcgtccgcctccttcccgagcgtaagcggcggcggctgcggcgatggctggccctcgccgcaaaaccctaggtcagtccccgttcagttcccctccccgtcctcgcctcccccttcccctcccatagagatttccgatgaggaggaggcggaggcggaggtggtggtggaggaggaggaggtggtggtggtggaggacgaggaggaggagtatgaggaggtggaggagatcgaggaccccgatggggactcccccttcgtcgacgcccccgagcacatctcccctccgccgccccctccgcctccggcgcgaacgccgatgccgacgccgacgccgaccccgaccccgaccccgacccgaccccccgttcccgtgtgggctgcccctcttccggcccgaaccccaactcctactccatctgcgccgccccgagccgcggcgccatcccctgcgggaaccccgtcgccgtccccgattccgccgtcgagcaccccggtgtctgcgctgagcgggccgctgcggcaggtggacgagttcctgagggggctcgggctgcggctgcgcccggagtggctcgagtcctgcgccgccggggtacccgggttctacggcctcggcggcgtggaggcgatggccaggcggtgcttcgagcagttcctcttcgccgacatgaacgcgtgcggcgcgggcgtgctcccggagggcgttgggagcatgcacaacgccgtcctcgatggccccctcgtgctgcaggttataccattttctctttacttagaatgcgtggttaaattttttggtcatacttttgttactgagctctaggttccctatacctgtactgctgtggtgccgcctagtgtggcatgcttggtgtgatctgcggaattttggaaggcacttaagatcaaatatctgctagtattttcagggaataaatatgtgcttcaagcttgagcccgtcgatgtttacttgtttcagttcggtagttcatgattcatctgacactcaatagaatggaaagctgtggttttcttcttttgtatatcaactcatcaagtgtgccatgagtgctgaatttcgtagcacaaatggtaccgcgccgaaataaacatgattttgatagcacagtaaattgcttattctgaaaagtagttgtcagttcctgtgtatttctttcctagcactgatgcctttatacgtcttgtaagttcaatttccaatctccatacaggcatacactagctcatgccatattcaataattttttaactttagcatacactaattgtacattgttgtagttttgcatttttttttgtgataatgtgttctggggttttccttttgttctttttttcctatggtttaactgactcttgagtttgtaaggttgatgagattgtcaacctgtcagctcctttaagggaaagatatcgtgatgcacatgcggggcccaaaagatgtttaaagttatcaatgacagatgggatccaacgcatatatggaatggaatacaggccgatcaaagacctggaagttcttgcccctgctggttttaaggtcattgctttctctgttcctttttcttcagaacatttgtattttgcgttcattttattagtttacatttaaaaattatcagtgaatttttttttcacacaacatagttagatttatccattagcattcaatatagcaaactaattatcacaaaactctggtttttccctcctagatagtagcttccatggtcactggtgctctgttagactccctgccttttcaatttacttttctcttaagaaatggtttctggagacaggcttctacaattaaacgataaatgcttatcaatctatgtaaacaatttgattgcgaacaaactattgactaagtgataatacaaaatagtgtgactggaagagacattttttccatttgctattttttgtatcaacagctcataacttgtcaacacatctcagattgttataagaaatgtgcacataaggagaggcctttttatgctggtgcccgaggtcattgagattcttgggggtgttgatgatgaactggatgaagcacgtaataggcttgtttctgaagtaaacaaaccgccacgtggcaaaaggtatatgttgtgcattagtgaattgagcagatttacatacatgacatttaattgcaacacatgcttcaaacttggattttaagcaatgacttgagagttatttttgcgaatatcctagtagttggataaatcatatcattcaaatgcaaatgtgcctgtttaggatctgtggtagtggcctttctgtggtaatggtgggagccatatgctgggaggtcctttatgaacaacggaactttctttgccttccatttcttttcaatttcatggaatttatttagcttctaagtttaaacaaaacaaatactcaatgttcacatctatccagtcagttgcatgccagaaattttgtttttcaatgtgtatataacatttcttgacaggacactgcttgtttgttcacaagtcacaactcttcatgctgcaggaaacaaggtggattaccattgtcttcgagagccactctagcagcctggccaacaaatgccaatgctacaaatgatgccgagcaaggagcctcagtgccaagaacagtgaatacccctcatccaaccagattaggtactatatagatttcattgatagattgattgtgtggcgaactagcttttgttcttagaaagaatggaaactgaattataaattagtagtaattgttttgctggaacacagagcattgctataacgtggccgtttttttaatccattggctttcaatgctaagttaggctagtttgtccacaattgctgcaacaagcactctcagtagactacctgccagatttttttcgttctccattcatgtggtaacgacgaaccgagtttagccaaattaaatgggattaacattgcaactcctcagttttatataatattcttcatcatgttttgtgatctcaaaatttcaatgcgcaggtaatgcttcccatgcttctcaggttggtagaactacacaacctatggtggacaatcttatccctcatgttgtagtaagcaatgcccaagagcaaagccgacatatccaagaaatcaccatgcagggccaacctacttctcttaataggcacaataaagaagcttctgcatcatatagatataatgcccaatgcagcattagtggaactacacgagctatggcagacgaacatgttttagtaagcaatgcccaagagcaaagcccgcatatccaggaaatcaccatgcaggaccaatctacttctcttaatgggcgcaataaagaagcttctgcatctacttcttatagatataatgcccaatgcagcattagtggaactacacgagctatggcagatgaacgtgttgacccttcctttgttggtaataacgtacatgaacaaatgcaacgtgttcaaggtatcaccatgcaggaccacattagtgcttctagtgagagcaaaagggaactttctgtgactaccccttctggatatgattcccgacttgcgccacatggtgttggcaatactggcacaagaagtggggaagccacacgatcttcaaatgtggatgatgggatcaataacattgggcatccgatcagtctatgtggcgaaaatgaaaagccttttacttacatattcaacatgttagctgattggggtgttcaacaggatacagtaccttatattcaaggaaaaattaaggtttgcttgcttcttagtacattagttgctcatttccaaatggttttgtttaccaaaaactttttaggagtacttcaactgcatcagttccatatttccagtttgaccaaactagttttcaatggctcaagaatgttggaacattctcttgcacacattatttttttaataatatatggaaatgagtaaacgttgattgatataactgctacagggtttgatcacttctgtcaaacggtttcaatacaagcaatccatgcaatacgatctttatgtctacatagatgatggtagttttattacagaggcctttgttgaccgtgatgtaagtaaatctatttgtattagtaatttatcctagtgtgcttacttgtgattgccatcttaccttattgcatcatcatgtgttctgccattctgtttgatagattgtacagaacatgattggcctttccgctgaggagcttgcagctgctctttcttctggtggcccagcacaagccaatataagaaaaactatgaaagcatttgagcatttcctggtgaactttgaggtcattcttgctctcatattattgtacctgttttcattgtgagtttgtgacgtttctgcattggtaaaaccttgcattctaatggcaggcactcagcaaccatactagttgagtaccatgtccaaaagtgaatacataatctttctttatcctagtggaacaggaatagactactgtgttgaagtaaaagattcttcatttttccttgttcagataacataggcaggcatagcgatagacattagccaattgaaattcaaagaatggtaataaaaatagcaggctatagaatttagatgaataatttagagtatttttaagaaacattttgctgtttaaggaaagtaataccagcacagagaacctatttgacattgcatattcttgaagcagccaaatttgatgatattatagctcgtaaatattgaagcacataagcccgacatgctattttgattataaacccttgcaaacttgcgtggttcatattattgctacatcaataacgtttcattacatggaattttagttcaattttgtttgtagcattctgaaatatgaaatgtgttttgagctctacttcccttgattgcagggcacaatccttattgagctcaacagagattcttctgttcctattgtacgtgagatgaataaaggttgttcaagttcggatgcgtggcagctgcttcggagggtgaaaacattttctggtcagggctacatgcggagcctggattttatggacaccactccatga</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0391000, RefSeq:Os04g0391000