Os04g0405600

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Revision as of 11:08, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os04g0405600| Description = Protein of unknown function DUF1350 family protein| Version = NM_001059246.2 GI:297602665 GeneID:4335751| Length = 6...")
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Gene Name

Os04g0405600

Description

Protein of unknown function DUF1350 family protein

Version

NM_001059246.2 GI:297602665 GeneID:4335751

Length

6373 bp

Definition

Oryza sativa Japonica Group Os04g0405600, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:20145649..20152021

Sequence Coding Region

20145908..20146002,20146400..20146508,20146688..20146858,20148475..20148624,20149181..20149288
,20150141..20150196,20150477..20150540,20150614..20150722,20151236..20151360
,20151460..20151529,20151610..20151896

Expression

GEO Profiles:Os04g0405600

Genome Context

<gbrowseImage1> name=NC_008397:20145649..20152021 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:20145649..20152021 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgataagggttgtgtctccgccgcctccgtccaccgtgcagctgcgcggcggcggcggcaccccggggccctcctcctcctccgcggtctgccgtttctggggttcccgaagaggaagtagagttgcggcgacgagtagttggggttgggggaagagtaggaggaggaggcgcgccgccatctcatgctgctctgctgaggaaggggaggggccccgggtcgccacgccgtcggctcccccggcgccgtccgagggatcgatacagctctactcgcagatcgagagggtgatcacggaggcggcgaagcagtcccgggagggctggggttcgaccggagattggaccgagatcgagggagcgtgggtgctgaagcctaaatcacaggagccctcgttcgttgttcacttcgttggtgggatttttgttggagctgctcctcagatcacttatcgtttcttccttgaacgacttgcagacaagggagctttggtgatcgcaacgccatatgctagcggctttgatcatttcttcatcgcagatgaagttcaatttaagtttgacaggtgcttaagaaacatggttgaacctgtaaatgaccttcccacatttggtgttgggcattctttgggatctgtgatccaccttctcattggatcaagatacgctgtgcagcgaagtggaaatatattgatggcctttaacaataaggaagcaagcttggcagttccattattttcgcctgtaattgttcccatggcacagagttttgggccaatattttcccagttgacatcatatccaacacttcgttttggggcggaagcagccattaagcaacttgagaatcttagccctcctgttgttaagcagctcctgccattagttcagcaacttcctccactgtatatggatttagtaaaaggccgagaagaattcgttccaaagccagaagagacacgtcggctggtaaaatcctactatgggatttctcgaaacctcttgataaagttcaaagatgatcaaattgatgaaacatctattcttgcgcaagtactaagctccgaatctgccattagctcactgcttgacatgtcaattcggtcacttcctggagatcatggactaccgttacagcaggtacttcctgatgttccaccagcaatggccgatgcagtaaacagaggaggtgaactcctgacaaatctagcaacagggacaccatgggaggctgttgctaaggaggtaggcactgggggtgcacagtactgcacagtcctgtccgcaaatctacagttcagttttacaagaaatgttcatttggtagcaacggaaggtctatag</cdnaseq>

Protein Sequence

<aaseq>MIRVVSPPPPSTVQLRGGGGTPGPSSSSAVCRFWGSRRGSRVAA TSSWGWGKSRRRRRAAISCCSAEEGEGPRVATPSAPPAPSEGSIQLYSQIERVITEAA KQSREGWGSTGDWTEIEGAWVLKPKSQEPSFVVHFVGGIFVGAAPQITYRFFLERLAD KGALVIATPYASGFDHFFIADEVQFKFDRCLRNMVEPVNDLPTFGVGHSLGSVIHLLI GSRYAVQRSGNILMAFNNKEASLAVPLFSPVIVPMAQSFGPIFSQLTSYPTLRFGAEA AIKQLENLSPPVVKQLLPLVQQLPPLYMDLVKGREEFVPKPEETRRLVKSYYGISRNL LIKFKDDQIDETSILAQVLSSESAISSLLDMSIRSLPGDHGLPLQQVLPDVPPAMADA VNRGGELLTNLATGTPWEAVAKEVGTGGAQYCTVLSANLQFSFTRNVHLVATEGL</aaseq>

Gene Sequence

<dnaseqindica>6020..6114#5514..5622#5164..5334#3398..3547#2734..2841#1826..1881#1482..1545#1300..1408#662..786#493..562#126..412#ggtgcgcgtgatagctctactctcgcggtcgctgtgggcgcggggcgggttggcgaagcggagacggcacgcgcggagtccgtacggccgcagcgaggcgacgtggtggcgtcgagtcggcggcgatgataagggttgtgtctccgccgcctccgtccaccgtgcagctgcgcggcggcggcggcaccccggggccctcctcctcctccgcggtctgccgtttctggggttcccgaagaggaagtagagttgcggcgacgagtagttggggttgggggaagagtaggaggaggaggcgcgccgccatctcatgctgctctgctgaggaaggggaggggccccgggtcgccacgccgtcggctcccccggcgccgtccgagggatcgatacagctctactcgcagatcgagaggtaggcgatggctaattccgtgcctgcgaaatctctctcctagattgataacatcttttgttgttgcggccggcgaacagggtgatcacggaggcggcgaagcagtcccgggagggctggggttcgaccggagattggaccgagatcgaggtgcgcttcggtgattgcgacctcaattgagagtgcaaaattttcctgctactgttgttgatgcagagtgattttacttactactggttgttctgatagggagcgtgggtgctgaagcctaaatcacaggagccctcgttcgttgttcacttcgttggtgggatttttgttggagctgctcctcagatcacttatcgtttcttccttgaacgacttgcagacaagtatgtggacaagcaatgcccaatgacccaaaattatctgtgtgcaacagtctaattctgctcaaagactgaaacagcgcggcatttgatttgttcgtaacgctggagagttgactatagttctatacccgaaatgcaacctttgaaaatttagccctccctttgttgtgtgtttaactagtgcatcattgcttgaccatgaatctagagaataagagctttggtgtgtaatttgtcattattaactgcaaggcacctctttatgtggttctaagcaagacacgcatgttcaatctatcaaaaagttagtgaaacaacaatcatttttaaagtttgtcctttgataatattacaagcaatgaactgcatcttcatttcaagaaaatgatacagtacttcttagctctagctctacacggtttacactgctattatgatttcctatagagctatctttctacatattccacttctctagcagacatgtattttatcagtctatttgaaatttaggggagctttggtgatcgcaacgccatatgctagcggctttgatcatttcttcatcgcagatgaagttcaatttaagtttgacaggtgcttaagaaacatggttgaacctgtaagttgttatttttcacataacaattaactccaatattgtccaatatactaagcaaacattttttttccaggtaaatgaccttcccacatttggtgttgggcattctttgggatctgtgatccaccttctcattggtacgagattataagtgcatatttcggccttgtttagttccaaactttttcttcaaacttccaacttttccatcacatcaaaactttcctacacacataaacttccaacttttccgtcacatcgttccaatttcaaccaaacttccaattttagcgtaaactaaacacacccttcatttatcttctgggctatgaagtattctttatgtaagattaaatttgtgcttgttcagttagcggtgtaatatgttgttttatcactgatgtttgcttctattaggatcaagatacgctgtgcagcgaagtggaaatatattgatggcctttaacaataaggtatgttttttgcgtgttatctcccctccttgttaacactagtaacaatcccatgctttgcaatgggcttatttaattgaggatatatccataccattaggatggatgggaccgtggatcgagtaaagcaccggaagactaactgcttgttcttttttcccctggtttttccttcttttttttcttctttttaggaggcagagattacatttcctggtttttgggacagatatggggaggacagagttgtttttttcgttaactaatcgtcttttcttttcctggttttcttcttttttttctcagttggttagtttttggcacttttttttctctttttttagcgctttttatacgtgagattggaaggggaggaaggaggatgactgtcctttcgaagtagtagagaaaattgcatggcttagggaagacacatacatataggtaaagaccatactagtacactgtagatgaccagggatccatactttattgctttagtttgtatctcttgataagataagtggataactggacattcctcattgagtagatatttaaatttggtaatccatagtaatgcaactttcagagtgaagtaagaacttttgtacgcttcaatctacatggagcgggtacatcagctgcgaagcatgtgatgcggctctgttagtttggtacaaaaatcgtagtgtcataagacacttgcatttagatgttaggacggaatgatgttatctattgtaaccagagcgaaaagaatttttgttccgttcaatctattaattcttttaaaagctactagtagaatattacttgtagtttttcttcttctttctttttcttttgcaggaagcaagcttggcagttccattattttcgcctgtaattgttcccatggcacagagttttgggccaatattttcccagttgacatcatatccaacacttcgttttggggtacgatgtgtttctgaattccattgccaaattgttacgatgattttttatattttatgacaaagtctgttgcttgaatggtctgcaactgttccacatggtggtattattttcttttcatccctgcactgtcattctcatttggacatctcctgtttctggagacgtactatctttcttagtatgtatcacaagtggaacttatggtgttaggtgtaggtgtaagtgacaaagtcggtatctgttcactattctaaaaataggaagttcccaactctaatagaatgttcgagttttatgttggcgagcccctcttcaattttaaactcagtaagcacatagaatttaccaccttgtttcatgttagttacaaagaatttttcctcagatagcaataatatgaaatagaaatggacatggatcattccaactattacacttgaatattgctactgatgccatgtcactctcccaaatacaaatcacatgtttcctatgtgttgattatatgccacttccctcttaagctaagatgattataatccttgcaaaacaggcggaagcagccattaagcaacttgagaatcttagccctcctgttgttaagcagctcctgccattagttcagcaacttcctccactgtatatggatttagtaaaaggccgagaagaattcgttccaaagccagaagagacacgtcggctggtaagttagcttattcgtctctttcaatgcttcagatgcttgcataggatatatgttaacctttcatctacaattgctgtgctgctgttgtaatattatatagaagtgctaaaaagtcaactctaaaacgatgtttttttttcttctatactttctattttaaactaaccaatactaaccactgggttaataaatttgaatagcctctgatatcatatgacataggatgcatccccaactcccccatcaatatcatttattggtgactagcagaatcttctatgcaattcatcacattgcactttttgaaaggatcatcaggcaatggatcatggtggattccccttgcatattttgaggatataggcagagatgtgcccaaatagaagtatacaaaccaaatgaaatcactaattctccagagctgttaaagtattttcaccatcagttctatactaagggtgtgttcaggtgtgcaggatggaaacccatcctgcacgtaaaacggagcggccttttaacatgtgattaattaagtattagttatttttttttcaaaatgcatcaatatgaatttttaaaacaacttttgtatataaaatttttgaaaaaaatgcaccgtttagtagtttgaaaagcgtgcgcgcggaaaacgagagaggtgggttgggaaaatggtgtaccgaactcagcctaacatcagttagcattttgagttgaattttctcggttcaatccaagtctacaaatgtcatttttggcgtgattgatgagtatagaaataaccaataatttgggtagtatgtacatatgtatgaaatgttcagtttgaagtctacaacaaactttaaggaaacaaggaattacgatggcagagttattatattttgatctatatatgagtttgttttaacaaaaaggaagacgtgttgaatatatcaaagctcttactggtgttaccataatctaaaattgacctgacagattagtatgatagtgaaatgcttgcaaagaccatttgctgtgtccactctataattcacactgctgatcttacagcattatttcgcccatcttaatcaaccctcgcagcatgtggctctctttaggtttggacaatcatgaaaatatgcaattcattcagtgcgcaaagatgtatgcaggataagctaaataactagagaactgtccagcaatcaaagaaatgttagcaccttttgtttgtgcatttgtggatgagtaggttggaatattattccctgttctgactcttgtatgatgtatgcccaaacataaaacaagttaaaaggagatatccttaatgttactgggacaaagtgagtaatatgcattaccatgctgcttcagacttgggaggagaaaagaaaaacagagagagaaagagctaactaatccatcacgtttaatgtagttggatttcttgtttgtatgtgatactaaaaataaaaaaagatgtaacttatgttataaatggcagcaaatttattatcatgaagcatttttcaaattattgtgttgtggtttttttttaaaaaaaataccactatataatttatttttatgattgttctaatgcattacacttctttctgcaggtaaaatcctactatgggatttctcgaaacctcttgataaagttcaaagatgatcaaattgatgaaacatctattcttgcgcaagtactaagctccgaatctgccattagctcactgcttgacatgtcaattcggtcacttcctggagatcatggactaccgttacagcaggtgattttcgctgaatatattctcagaattaaaggtgctgacaaatgacaaagcctgtcatgtacagcacgtgctgtccatgaataaagctattgttagactaaagatattattttttgagaaagttattgtatccgtctctcttatttcagctaagtaatcacatatttttccttcaggtacttcctgatgttccaccagcaatggccgatgcagtaaacagaggaggtgaactcctgacaaatctagcaacagggacaccatgggaggctgttgctaaggaggtaggtagcactttaggtgcggattcgggcgttctacgagcacaaatctcaaaggatgtcaatacacttgttgacgtaattgtttcatggattgagtcaaattctggtccaagattacttcgttcatgatgacacccccacaaaggtttagcaggttgggaatgccagtaccaaacgtcaagaggattcaactgacgagtattgcaaactgtagattgcatttcaaccccgacatgctagtggtgtatatatatgctgtacatcgtagcgcatgacttgttgaatgtaatctatcttgatggagtattatgaatgtacatttccattaaaaaaatgtacatttggaaggactagaatagagcgatgagtttatgggtttgtggctgctctgatcctgacaggcactgggggtgcacagtactgcacagtcctgtccgcaaatctacagttcagttttacaagaaatgttcatttggtagcaacggaaggtctatagttctccgaggaaactggccgaggtatgcacccgtgcttatcattcttcgtaaaactgtaattatttgttaaaactatccttttacttcagatgggtatttcataagactgctgcaacaacaacagcaacaacagttgattttatcacatatgggctcgacttaccctgatataaagtattgcatgtgtgtatgatatatgtactcaaaacttttcaggtgaataatgtaagctttttgataaagtcatacactattgtt</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0405600, RefSeq:Os04g0405600