Os04g0412300

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Revision as of 11:08, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os04g0412300| Description = Glycoside hydrolase, family 17 protein| Version = NM_001059274.1 GI:115458277 GeneID:4335780| Length = 4610 bp| Def...")
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Gene Name

Os04g0412300

Description

Glycoside hydrolase, family 17 protein

Version

NM_001059274.1 GI:115458277 GeneID:4335780

Length

4610 bp

Definition

Oryza sativa Japonica Group Os04g0412300, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:20395454..20400063

Sequence Coding Region

20395596..20395683,20397926..20398962,20399350..20399406

Expression

GEO Profiles:Os04g0412300

Genome Context

<gbrowseImage1> name=NC_008397:20395454..20400063 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:20395454..20400063 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcggcaggggagcaaccgggaactgggtcgccgccgcagccgtcgacccgcctcttcctcctcgtcctcgcagtcatcctcacagatcaagtgctagcggcatcagctcaaggcatgtcaatcgggatcaactacgggcagatcgcggacaacctcccttctccgaccagggtctcgggtctcctccggtcaatgcagatcagcaaggtgaagctctacgacgccgaccagaacgtcctgagcgcgttcctcgacacgggcgtggagttcgtcgtcggcatcggcaacgagaacgtgtcggcgatggtggacccggcggcggcgcaggcgtgggtgcagcagcacgtccgcccctacctcccgagcgcgcgcatcacctgcatcaccgtcgggaacgaggtgttcaagggcaacgacaccgcgctcaaggccaacctcctgccggcgatgcagtccgtgtacaacgccgtcgtcgcgctcgggctgcagggccaggtgaacgtcacgacggcgcactccctggacatcatgggcagctcctaccctccctccgccggcgcgttccggcccgacgccgtgccgtacatccagccgctgctcaacttcctgtccatggcggggtccccgttcctgatcaactgctacccgtacttcgcctacaaggccgacccgggcagcgtgccgctggagtacgtcctcttccagcccaacgccggcgtgaccgacccaaacacgaagctcaactacgacaacatgctgtacgcccagatcgactcagtgtacgccgcgatgcaggcgctgggccacaccgacgtcgacgtgaagatctccgagaccgggtggccgtccaggggcgaccccgacgaggccggcgcgacgccggagtacgccgggatctacatcggcaacctcctgcggaggatcgagatgaagcaggggacgccgctgaggccgtcgtcgcccatcgacgtctacgtctttgcgctgttcaacgagaacctcaagccggggccggcatccgagcggaactacgggctgttctaccccgacggcacgccggtctacgacgtcggcctgcgcgggtatctcccgccgatggacgaatcgaaaagcgcgcgaaaggcggtttcagtgttagctctcatcgccattgcatcgatcactctcatcttatcctga</cdnaseq>

Protein Sequence

<aaseq>MAAGEQPGTGSPPQPSTRLFLLVLAVILTDQVLAASAQGMSIGI NYGQIADNLPSPTRVSGLLRSMQISKVKLYDADQNVLSAFLDTGVEFVVGIGNENVSA MVDPAAAQAWVQQHVRPYLPSARITCITVGNEVFKGNDTALKANLLPAMQSVYNAVVA LGLQGQVNVTTAHSLDIMGSSYPPSAGAFRPDAVPYIQPLLNFLSMAGSPFLINCYPY FAYKADPGSVPLEYVLFQPNAGVTDPNTKLNYDNMLYAQIDSVYAAMQALGHTDVDVK ISETGWPSRGDPDEAGATPEYAGIYIGNLLRRIEMKQGTPLRPSSPIDVYVFALFNEN LKPGPASERNYGLFYPDGTPVYDVGLRGYLPPMDESKSARKAVSVLALIAIASITLIL S</aaseq>

Gene Sequence

<dnaseqindica>143..230#2473..3509#3897..3953#gatccgcgcgctgctaccaccacaaacattctaccgcgggacacacactcgtctttaccacacaacacgagcacgcgcgcgagagagaaagggggagataagagcagtttgacttcgagcttcaaccacagccgagtgatccatggcggcaggggagcaaccgggaactgggtcgccgccgcagccgtcgacccgcctcttcctcctcgtcctcgcagtcatcctcacaggtgagctctggtgcaatctgggaatcggattcctcattttcacatttcactcctccctgaactgcaagtctgaatttacatgttacagtatacagtttaccaatcaatttagcatctcggggtatttactgaggtgcgcctgaactgttgaataatagtatctattaaattacgacataagctgtcagcgtaggctcagaccgtgaaacttatattgctgacaggatatagaagaaatgatcaaactaaagaaactctaagcctgttgtgaaatggttttgaatataaaggaactctgagcttacagcatgtctgaactcagaatgaaggttaatgttactggttgaactagctgtacatacatatgatcctttgcatgaagctccctgaccgtttgagtttgaccttcgtagctaactggtgtctcagacaatctctgtgtctgtttaagcataaattatttgcacggaattattttttgttccattttccatttcttcacatcgcttattttttaatggaaattatgattgatactgcctttccattagttcagtgcatatttaattctgttctgacttctgaaagttcttttttttattaatggtaaatatatttatgtattttgcctcaataaggaatacttcattaggctatactgattattttcccaaaacaatatgggaccacctatacatttggcgacaaattttctcctaaaaatttgacagatgtaattgtaatacaatcgtagtgtaattacactgtaacttatatgtaattacactgtaacttgcatgtaactacagtgtaacttgtacgtaagtttcatgtaattttgaatcattatatctattacaagatttgttttgctggggaagaaaaaaaatcacggcacatacatatgtataaggatttgttcccacaacctccattttaccgaaataacatattacagagagatttttgaaagttacatacaagttacactatagttacagtgtaattacatgcaagttacagtgtaattacactacgactgtactgtaattacatctgtcaaatttttgggagaaaatttgtcgacaaatatatagcaaaatcgaacaatattgcaattcacattgcaagctattgtgaatggtggttattagatgtccttgctgatataatcttacctaaatttttaacgcatatccagtgagattacatggtcccccttgtgctccatggcgtaaggcaggctacccactaagatggcatcaccccaaatcccaatactaaatccgagccttttagcttatttgcctaagaaacgagtctatttgtcactttttccttctccttttcgcctcaatttgacgtgcatctgatctggttctgagctgtgatgactttctccgtaaagcttgtctgcgacagtggtttgcttaactcgcagttgccagctaaatctgatgaactttttgatcacttgtggccataggaagagaaattttataaatcatgatcctctaccctggaactctgaaaggtgtttgataacgtaagttgtttttttattgacttgattcttggtgggacacccgaatcacatgctcacatgtggaccagacttctcatcagatcatgtaattaagtaattaactagaattgtgtaccattgatcagaggtgcagctaagatttctcgtaactttagttacttttcaaatctcctagattccttcaccaatgatctgttctggtgcaatttgggtcatttgtggaccacatgatgtatgttgtcttctttctgatcagatgatcaaaaccaagtcatgaagttatgtctatatatagcgaaactgttttagggcaaacagtccatttgtggtgaaaactgaacactaatgtcaaaagcctcctggaaagtgaaagggtttacacaaagttgttttcctcttttaccctctcaacaaaatgcattgtccattgtcataaaaatattgttcttttacttttcaatatgcatttttaccatttgttttgtgttgttagttatctatctagaaaaactttacgaagtataatattatgaaaaaatttcttatgcccaacttattattcatatgattttcattcattcagaccttcacgttggcattaactcgtatgttttctgtgactagagtagtacaatcatgcatcttaggttaatatagaaaacatattgattttgatctgatctgtaacaattgcagatcaagtgctagcggcatcagctcaaggcatgtcaatcgggatcaactacgggcagatcgcggacaacctcccttctccgaccagggtctcgggtctcctccggtcaatgcagatcagcaaggtgaagctctacgacgccgaccagaacgtcctgagcgcgttcctcgacacgggcgtggagttcgtcgtcggcatcggcaacgagaacgtgtcggcgatggtggacccggcggcggcgcaggcgtgggtgcagcagcacgtccgcccctacctcccgagcgcgcgcatcacctgcatcaccgtcgggaacgaggtgttcaagggcaacgacaccgcgctcaaggccaacctcctgccggcgatgcagtccgtgtacaacgccgtcgtcgcgctcgggctgcagggccaggtgaacgtcacgacggcgcactccctggacatcatgggcagctcctaccctccctccgccggcgcgttccggcccgacgccgtgccgtacatccagccgctgctcaacttcctgtccatggcggggtccccgttcctgatcaactgctacccgtacttcgcctacaaggccgacccgggcagcgtgccgctggagtacgtcctcttccagcccaacgccggcgtgaccgacccaaacacgaagctcaactacgacaacatgctgtacgcccagatcgactcagtgtacgccgcgatgcaggcgctgggccacaccgacgtcgacgtgaagatctccgagaccgggtggccgtccaggggcgaccccgacgaggccggcgcgacgccggagtacgccgggatctacatcggcaacctcctgcggaggatcgagatgaagcaggggacgccgctgaggccgtcgtcgcccatcgacgtctacgtctttgcgctgttcaacgagaacctcaagccggggccggcatccgagcggaactacgggctgttctaccccgacggcacgccggtctacgacgtcggcctgcgcgggtatctcccgccgatggacgaatcgaaaagcgcgcgaaaggtaggcggtgtgaactgtgaactcgatcgtttttttctccttcaaaatctgcaaaactgttacaaactttctgctgcatgtcacgcatcatatagataaaagaatttagatcaggtgaccgtgctgctttcatataatactttatcaaacgtttggcaactagctaatcacatggcctaagcaggaatagaactccccactaaatcggtgtcgaaagtaattgatgactttgacgcatctgctttagttttgccgcgaaagcgtgaagtgtccgttctatgaatgtgcaaatgaaacatcagagatagtacatcctccttttgcatctctaatttacaagagacctgactagtaacgactaacgaccgtgacatttgtccttggcaggcggtttcagtgttagctctcatcgccattgcatcgatcactctcatcttatcctgagagtatatacttttgtccagttcagtaaagtagagtaaaggtgcagcatctcttgctgctgaagattcccatagaagaaagcaaggtaagatagttggaagacaaccagcatttttatctatgtagttttttttttgagtgaatttatctatgtagtggattcttcatgtagtaaaatagcttgttttggattaagaaatagagaaaattcttcaaatttggaagatctagtaaattctgatactatagtagtttgccatattagtaggaattaatcacctatatgctcatgccacatactagtatgctcaaagattaacctaatattacattactccagggatgcttcgggagcacaagatcattcagatttcagaacgataggatcgcccatgcatttagtgtgtctttttatttttatttgatactagcatttaggggctaaatttggcacagatagtgatgtagaagtagaaactaacgaaagcttcgagatgatacaagtccagatctgtaatatacgaccttggtttgatacaattcttgttgattaatttcttattgatacattttgatttgtttatgcaaactgtatattgtatatatcagtgggacaatcatcggtacataagttcagagagatatttgtagtattgt</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0412300, RefSeq:Os04g0412300