Os04g0480900

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Revision as of 11:14, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os04g0480900| Description = Glycoside hydrolase, family 5 protein| Version = NM_001059640.1 GI:115459009 GeneID:4336181| Length = 4074 bp| Defi...")
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Gene Name

Os04g0480900

Description

Glycoside hydrolase, family 5 protein

Version

NM_001059640.1 GI:115459009 GeneID:4336181

Length

4074 bp

Definition

Oryza sativa Japonica Group Os04g0480900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:24453431..24457504

Sequence Coding Region

24453441..24453848,24455332..24455576,24455689..24456209,24456696..24457186

Expression

GEO Profiles:Os04g0480900

Genome Context

<gbrowseImage1> name=NC_008397:24453431..24457504 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:24453431..24457504 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcttcttcctctccacttctcctgctgctactgctgctcccgctcgccgccgccaccgccaccgcgtcgctcccgccgctgccgctctcgacggcgtcgcggtgggtggtgggcgcggacgggcggcgcgtgaagctggcgtgcgcgaactgggcgtcgcacctggagcccgtggcggcggagggcctgtcgcgccgcggccttggggacatcgcggcgcgcgtggcggcgatggggttaaactgcgtcaggctcacctggccgacctacctcgccaccaacgccacgctggcgaacctgccgctgagagcgtcgctggaacgccttggtatgccggagtccgtggccggcgtccgggtcaacaaccccggactcctcgacctgcccctcatcgatgtgttccaggaagtggtgtcagctttggccaagaacaatataatggttatacttgataaccaaatgacaactccaggatggtgctgcagcgaaaacgacggtaatggcttttttggtgacaagtactttggcccagaagaatggttgaaaggccttagtgcaatggcaacaatgtttaggaacacaaaaaatgttgtgggcatgagtttaagaaacgagctccgaggctccaaaaatgttagtttgtggttcaggtacatgcaactgggtgctgaagttgtgcatgcggcaaaccctggcgttcttgttattttgtcaggcctgaacttcgacaatactctggatttcttggtcccaaatcaaattcagctaacatttactggaaagttagtctttgagcagcactggtatggtttctcagatgatggaaactggggatctcagaaccaaaacgatgcttgtgggatggttgttgattccataaagaaaaaaggactgttcctacttcagcaaggctggccactgtttttctccgagtttgggtttgacatgtctgggacacatgtcgctgacaatcgctatcttacctgcttcttaaccgtggcagctgaaatggatctggactgggctatttgggctctgcaagggagttattatatcagggagggtactctagcttatgatgaatcttatggattgctatcctgggattggtgtacagctagaaaccccagctttattaaaaggattaatgctctgcaatcaccattccaaggtcccgggcttccaaacagtcaacagccttacaatgttatattccatcctctatctgggctttgtgtcttggtgaaatcttcagaggcacttgagttgggtccatgtgataaatcaaatgcttggaattataccaaaggatacgagttaatactcaaacaaactggacaatgcctccaggcgaagtctgttggtgagaatgcaaagcttggcaccagttgcagcaaatccagttcaaagtggaagctactatcaaattcaggaatgcatgtttcaactgaactcaccaataacggaaccagagtatgcttggaggccagtcctgatggaaatatcacgacaaatcagtgcaagtgcctaaccgtagatccgaattgcaatcctgagagtcagtggttcaaaattatattaagcagtaaacacataccaggcggcacctccattttgcagttgccatctcatggtccctggtctccaacatcatctagttaa</cdnaseq>

Protein Sequence

<aaseq>MASSSPLLLLLLLLPLAAATATASLPPLPLSTASRWVVGADGRR VKLACANWASHLEPVAAEGLSRRGLGDIAARVAAMGLNCVRLTWPTYLATNATLANLP LRASLERLGMPESVAGVRVNNPGLLDLPLIDVFQEVVSALAKNNIMVILDNQMTTPGW CCSENDGNGFFGDKYFGPEEWLKGLSAMATMFRNTKNVVGMSLRNELRGSKNVSLWFR YMQLGAEVVHAANPGVLVILSGLNFDNTLDFLVPNQIQLTFTGKLVFEQHWYGFSDDG NWGSQNQNDACGMVVDSIKKKGLFLLQQGWPLFFSEFGFDMSGTHVADNRYLTCFLTV AAEMDLDWAIWALQGSYYIREGTLAYDESYGLLSWDWCTARNPSFIKRINALQSPFQG PGLPNSQQPYNVIFHPLSGLCVLVKSSEALELGPCDKSNAWNYTKGYELILKQTGQCL QAKSVGENAKLGTSCSKSSSKWKLLSNSGMHVSTELTNNGTRVCLEASPDGNITTNQC KCLTVDPNCNPESQWFKIILSSKHIPGGTSILQLPSHGPWSPTSSS</aaseq>

Gene Sequence

<dnaseqindica>11..418#1902..2146#2259..2779#3266..3756#acttgttaccatggcttcttcctctccacttctcctgctgctactgctgctcccgctcgccgccgccaccgccaccgcgtcgctcccgccgctgccgctctcgacggcgtcgcggtgggtggtgggcgcggacgggcggcgcgtgaagctggcgtgcgcgaactgggcgtcgcacctggagcccgtggcggcggagggcctgtcgcgccgcggccttggggacatcgcggcgcgcgtggcggcgatggggttaaactgcgtcaggctcacctggccgacctacctcgccaccaacgccacgctggcgaacctgccgctgagagcgtcgctggaacgccttggtatgccggagtccgtggccggcgtccgggtcaacaaccccggactcctcgacctgcccctcatcgatgtgttccaggtgagcgtctcttcgaataagcaaacacggagtaaatgacaacgttggtttctccaagttgttaagtaaacttattattaatggcagttctaagaaatggctgttttttttttaacaaccaccatgggaaatggaagctgtttctattgttagcgagttcgagtcttcgagatggcgccaaattttaccgtgtcttaccgctagatgctactacctccgtttcagattataagactttctagcattacccacatttatatagatattaatgaatctaagcacacgtatatgtctatattcattaacatatatatgaatgtggacaatgctagaaagtcttataatatgaaacggaggaagcagtattttcgctgatagagtgcaagaaaatactccctccgtccaagagttgtaggagaaattaagtaaaggttaaggtgaaaccactttcatgtaccctggttgaatccccatgccaccatccgattcaccgggatggggaatataactatgagggatggttgaaaacttggaatgtggaaatatactctagaaatgtttatagaaaatattcgtggactaaatttaaacactagaaatgcttatatttgtggacggagggagtagataacgttgtacctagaagaacatttacattttttgttgttgaaagctatgggctcatttaaacatttaagtcagagtccatgtaaattttacatttttctgaagaaatagctattatgatgcataaggcttaattgtggaagcaacagtatgcaatgaatcaattgacttatagctaaaccaactgcaggtcatgtggtttaatttaacaaaaacaacttgctaagaagtcaaaattttgcagattattgattttgaaatcagatgatctcgtcacaatcttttcacaagacttgccaaagaaacctagggtatcctcttttttttttgcttatttaataagaacaatcaatttcaagttgaaggtttaagcataatcaacaatctgatcgtccttttctatttcaggaaaaaccaatggtaattgtttgagtagctttccctttttccttttgtttctcttccaaaccagtttatgtgaagatgacattattcctaatagtcaccaaattgatggtccaagataagggtgccttgaaagtctctagctagataaattctttctttgtaaaatatgttctgacgatagatggcaactggggtcattaggtggtctgcttcctttttttaaaaaaaaaaatccaaaccagggatgtattagttatctctcattttacaatgatgtatctagttagttgacctagtaatctaccaaaacatgtgttcacatactcaggagtatattctgggagagtttacccgtactaaacattaaatgaaataaagtaaacgagatttttgctatcaagtgttgaattctgattatttactccttctgttaaattaataaccataggaagtggtgtcagctttggccaagaacaatataatggttatacttgataaccaaatgacaactccaggatggtgctgcagcgaaaacgacggtaatggcttttttggtgacaagtactttggcccagaagaatggttgaaaggccttagtgcaatggcaacaatgtttaggaacacaaaaaatgttgtgggcatgagtttaagaaacgagctccgaggctccaaaaatgttagtttgtggttcaggtttgttacttacacactgagtcttacttttgcttatagaagtattgaaaaggcttttatgtgtgactcgtatcattggaaaattttcgtttataatctattccaaacttaggtacatgcaactgggtgctgaagttgtgcatgcggcaaaccctggcgttcttgttattttgtcaggcctgaacttcgacaatactctggatttcttggtcccaaatcaaattcagctaacatttactggaaagttagtctttgagcagcactggtatggtttctcagatgatggaaactggggatctcagaaccaaaacgatgcttgtgggatggttgttgattccataaagaaaaaaggactgttcctacttcagcaaggctggccactgtttttctccgagtttgggtttgacatgtctgggacacatgtcgctgacaatcgctatcttacctgcttcttaaccgtggcagctgaaatggatctggactgggctatttgggctctgcaagggagttattatatcagggagggtactctagcttatgatgaatcttatggattgctatcctgggattggtgtacagctagaaaccccagctttattaaaaggattaatgctctgcaatcaccattccaaggtttgtacttaacctatctcagttttattcttacatagcaacgttgttagtaatacaactctcaagatttctggaactgtgctgttgttctacgttttgataatcacattaaaaatggagctctctggtaaaattgaagttataatgaatcctcagttgctgaaccaacagaaaaaacctgtgcatatttcattggttgaattggaccgcttttcagtttttcacctttttgggttgtgttggaacagatttattggaacatatatgaaatcggagcattaactagtatgcacacattggtttagccctcatcatagaataacgtgtcccttgaaaagaaatcacttggatggatacacaggccgatgtgcaagaaagtaagcaaaggggctatgtaacttgtaaaagtccactaaaagtttggtcacaacaatatgcactgtatttccttgagctatacatattaatgaatattccatcctccaggtcccgggcttccaaacagtcaacagccttacaatgttatattccatcctctatctgggctttgtgtcttggtgaaatcttcagaggcacttgagttgggtccatgtgataaatcaaatgcttggaattataccaaaggatacgagttaatactcaaacaaactggacaatgcctccaggcgaagtctgttggtgagaatgcaaagcttggcaccagttgcagcaaatccagttcaaagtggaagctactatcaaattcaggaatgcatgtttcaactgaactcaccaataacggaaccagagtatgcttggaggccagtcctgatggaaatatcacgacaaatcagtgcaagtgcctaaccgtagatccgaattgcaatcctgagagtcagtggttcaaaattatattaagcagtaaacacataccaggcggcacctccattttgcagttgccatctcatggtccctggtctccaacatcatctagttaatcttggactatttcgaaaatatcctgtttgaatttgatcaaggacgaatatgacagagcaagtgtcaagttccagatggttattcaaggcaattggatgactatagtattgcagcttgtaaaataatacacagaacaccgtatgtgtacagtagtagtaccattgatttcttgttttctagagtcctgttgaaatatgtcctatcatatgtgtacaaaaattaagaataaaagaatgtacagataaataccctgctttttctttgatactacagagaataaaagggatatctttttatagttggtgtcatatgttgac</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0480900, RefSeq:Os04g0480900