Os04g0485200

From RiceWiki
Revision as of 11:15, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os04g0485200| Description = UBX domain containing protein| Version = NM_001059666.1 GI:115459061 GeneID:4336208| Length = 4130 bp| Definition =...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os04g0485200

Description

UBX domain containing protein

Version

NM_001059666.1 GI:115459061 GeneID:4336208

Length

4130 bp

Definition

Oryza sativa Japonica Group Os04g0485200, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:24651878..24656007

Sequence Coding Region

24651878..24652072,24653101..24653209,24653310..24653378,24653498..24653571,24653670..24653799
,24654579..24654683,24654788..24654998,24655640..24655643

Expression

GEO Profiles:Os04g0485200

Genome Context

<gbrowseImage1> name=NC_008397:24651878..24656007 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:24651878..24656007 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggaggcagagcacccgcaccagatcacatacaccaccaccaccaccacctccacctcatccctctgcccgcgccgcaggaagagaggagacgacgaggcggcgcaccacctcgtgttccccatggatctcgactcggccgcggcggcggctgcggcggcggcgcaccaccagcagcagcagcagcagaccacgtcccaggacaagctgaaagcattggcttatgagtacggtcatgagttccgagtattttcaagtgtaacatttgagtcaatgactagcaacttgcccgcagcagatcaggaggaagatgatgacttttatgagcttcagcctgctgactatttcaacttggtttcgaacagaataggagaacaatcgaaagttttgaagactcgtaaaatgcgtgaagcagaacttgctgcccaacgagcaaagataaaaaaggcagtaatgagggtgcgattccctgatggatacatacttgaggccgattttcatccgtcagaaacagttcaaagtctgatggattttctgaagaaagtaatctctagaccagacctgccattctatctctatacagttccaccaaagaagcggataaaagacacttcactggatttctacacaattggttttgttcctggggctaatgtctacttctcttatgatctgccggaaggctcagagttaaatacagacagtgtaaaatcaggaccttatctccgtgaagaaattcggatgttggatggactaccaattgtccaagaacctgtgcaccaaccaattgattctactatgaactcttcttctgctcatcaatctgatgtgtctcaatcagattttgcaccgccagcaaacaagaaaccagctaaaccaaagtggttcaaaaggtga</cdnaseq>

Protein Sequence

<aaseq>MEAEHPHQITYTTTTTTSTSSLCPRRRKRGDDEAAHHLVFPMDL DSAAAAAAAAAHHQQQQQQTTSQDKLKALAYEYGHEFRVFSSVTFESMTSNLPAADQE EDDDFYELQPADYFNLVSNRIGEQSKVLKTRKMREAELAAQRAKIKKAVMRVRFPDGY ILEADFHPSETVQSLMDFLKKVISRPDLPFYLYTVPPKKRIKDTSLDFYTIGFVPGAN VYFSYDLPEGSELNTDSVKSGPYLREEIRMLDGLPIVQEPVHQPIDSTMNSSSAHQSD VSQSDFAPPANKKPAKPKWFKR</aaseq>

Gene Sequence

<dnaseqindica>1..195#1224..1332#1433..1501#1621..1694#1793..1922#2702..2806#2911..3121#3763..3766#atggaggcagagcacccgcaccagatcacatacaccaccaccaccaccacctccacctcatccctctgcccgcgccgcaggaagagaggagacgacgaggcggcgcaccacctcgtgttccccatggatctcgactcggccgcggcggcggctgcggcggcggcgcaccaccagcagcagcagcagcagaccacggttcgtccgtctctttccccgtctccccccttttcttgcgtttcttggatgaaattaatctgctgcttcatcgctggacatatgctctgcgagttcttgttctcgggtttgggggtgttggggggggggggatttcttgggaaggcttgtgtgcgaggatttgtgcctggggttcaggagaggaggaggaggcgcctctctggattctttgctttggtgggttagcgagggtttctgactttcttcgtggccgtggttggttggcgccgaatgcgtggtgcgagaattcttaggcggttcttgttgtgtgtgcgtggaaagagagattctttgcttgcgtgtgcagtgatcgggtgatttgggaggaatccatggttttctttgacctaggtgttaccgccatggattggatagaggatgttcccattataagctggaatcatgaggaatgaaccttcgtggggaaacactagtgcaatttagcttcccttttttctttgtcgtgagtagttccttgcaagtgtttctcagcgattgaaatgaaagattagcagttcagcccttgcgtagttagcattgttagcattttagataaatgctggctgtgtctgtgtggacatcaatggccaggagatgtttggttgccattatcagcttcatctacacaaagttatttcttttgttgcgatatcttgttcatccttcgtacggttggcagagaaacagtactgtatctcgggaaaggtttggagggatgctgtcaggagttctgcaaagtagcgtaatagcttaaaactacatggcattcacttgttcttggcagcacttgtacttggttctgtttttcctgttgagagatgttcgattattggcaatttcatctcatacccatgtgcatttgataacctcctaatagatatttgtggcttcatcataaacaaaacaataattatagcaattcttgcttcacatgaacctttttgcaaaaaattacattgaagtctaacagatgcattttctgtcaatagtcccaggacaagctgaaagcattggcttatgagtacggtcatgagttccgagtattttcaagtgtaacatttgagtcaatgactagcaacttgcccgcagcagatcagggtacaatatatctcttgcttttatgagttccgaggttttctttacaaaaatctctctatctttatggttgtgctctgatgctaaaacatggttcatgcagaggaagatgatgacttttatgagcttcagcctgctgactatttcaacttggtttcgaacagaataggaggttaattatattgacacttactattgtttgggaactttagcatctgtgtagtactgtccaaattgtactacttttcttttttattgtagcactatctaaaacaatgaaactgactgcagaacaatcgaaagttttgaagactcgtaaaatgcgtgaagcagaacttgctgcccaacgagcaaagataaaaaaggtaagatataattcacactgctcttctctgtatttagtgtttctttctgaatctaatttggtataatatctatttttccacaaccttcttaactgtaggcagtaatgagggtgcgattccctgatggatacatacttgaggccgattttcatccgtcagaaacagttcaaagtctgatggattttctgaagaaagtaatctctagaccagacctgccattctatctctgtaagtccacttgcttgggagttactgatgtattagcttcaacagtagggtttcacctcctctttgcccccttaattacccacctttgtttatcctatcaacaacgatctcggcttacagttagtgtaatttcatctgtttcagtttacagttagctttggttttcataaagactaatgagaatacttgtatctatgataagaactatttatctgtttcatttgcaatcaaatatgttggcaatcatgatatcggaaataactaacctcccttaagtagttccatcattatagttacatgcgagtaaaatttaagtgcatccttttgtgtaaagggttttacaatcaaccaccttttacagagtaatacaagttaataagcaaaattgggtacaacattcagaacacctatttgatgagttcatatgacaacatgacagtagctcaaacaggacaagttttctcatcgtgttctcgttgcccaaacttggattagacactatctgttgttatgtcaaaggaatatcgtcagtcaccaagttgattctgtctggtgatagctttgacaaatgtttgagttaaaatatgccacatgtaacctgtatgtgaaaacatagctttaggtttaacttctacagttttttgggtaagcatcatattcatctgtcattctttgagcacagatcatttgagtgacatctccatagattctctgcattcatatcatagagatgtaccagttataatttcgtaatactccatcatttgattccactacagatacagttccaccaaagaagcggataaaagacacttcactggatttctacacaattggttttgttcctggggctaatgtctacttctcttatgatctgccggaaggtatgtttgtcctaaataagtaataactagtaccaggttttgttcctggggaactcattagacattcccattcgtttttgttttttttattgaatcacatgcaggctcagagttaaatacagacagtgtaaaatcaggaccttatctccgtgaagaaattcggatgttggatggactaccaattgtccaagaacctgtgcaccaaccaattgattctactatgaactcttcttctgctcatcaatctgatgtgtctcaatcagattttgcaccgccagcaaacaagaaaccagctaaaccaaagtggttcaaaaggtagactttcttttagtgacatactgttatgaaagagtgaattcattgctaagctatgctactacggtgctacttcttttttggttcaaatttatctgttttctcacttctcttggggagcaaaactaaattattgccctggcaataatttatacatatctgaattctctgtttaattagaataagaacctacatggagacacctgtgaacttatcgcttgctttagggtgctagaaggtaaatcatggtgatcttgcagcaatgaatttgctatttctccagcagtaacaaaaacccctcttcaagtagcatcgttgcatgagcaacaagcctaatttatatatgttgtctgaaccacctgtcgcagcttctaacatatcatcacttcaagatgcattaccatgttcatcatgaaattttgttgatttttcattttcactcttgaccaattgtacatatcaatgtatttatgtttaaaaaagtcagtttcagtttcaacctgtgcatgcattttgctgtataccactgaagttgttctttgtaacactgctgctttcttggacattactgctatagcaatctttgctgcaccgtgcattttacttgatagattcatcatttatgtatggatgccttgcaggtgatgatgaggtgagacagtcagggcgccaagaatgcaccaccagaggacgactctaatgtagggggatagagagtgaaagcatgacaataatgggttgctgttggctttcttgatggatggatacacattgtaaaatgaaactttccaaagaaatttcacgagtgctgcagaatgattttttgcgtctgatagcactgcattacactgtacactccgttgctaacaaagcctcccttttcctgagtgcatatggctgggggtgtttggttgattgcttcactttgtcacgccacacttcagtcatgccacagtttgtagatgtgtgtttgtttcaatgccacagttgtgtcatgccacacttttct</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0485200, RefSeq:Os04g0485200