Os04g0496400

From RiceWiki
Revision as of 11:16, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os04g0496400| Description = RNA-binding region RNP-1 (RNA recognition motif) domain containing protein| Version = NM_001059735.1 GI:115459199 Gen...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os04g0496400

Description

RNA-binding region RNP-1 (RNA recognition motif) domain containing protein

Version

NM_001059735.1 GI:115459199 GeneID:4336279

Length

5366 bp

Definition

Oryza sativa Japonica Group Os04g0496400, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:25232963..25238328

Sequence Coding Region

25233113..25233197,25233884..25234012,25234106..25234329,25234707..25234916,25235006..25235098
,25235208..25235246,25235350..25235439,25235523..25235625,25235697..25235777
,25236238..25236314,25236465..25236545,25237474..25237565,25237845..25237971

Expression

GEO Profiles:Os04g0496400

Genome Context

<gbrowseImage1> name=NC_008397:25232963..25238328 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:25232963..25238328 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggagggcggcggcgaggtgggctggtacgtgctcggcccgaaccaggagcacgtcggcccctacgcgctctccgagctgcgagaacattttgctaatgggtacatcagtgagagctcaatgctctgggcagaagggaggagtgaatggatgccattgtcgtcgattcctgacctacttgcggtggtcacaaaaaaggatcaacctgatgaaggaattgaagatgatttcgataaatttcaaaaggaggttatagaagctgaggcagaggtggaagcctcgacagacaaggctgcagataacgacataaaccaagaacatggggccgatgatcctgatgaccggccagcaaccccaccagatggcgaggacgaatttactgatgatgatggtactgtttacaagtgggatcgtgtcctgagggcatgggttcctcaagatgacctagaaggcaaaaatgacaactatgaagttgaagacatgacttttgcacatgaggaagaagttttccaagcaccagatattgctggttcaaccacattagaagaaaacaatgtttctgccgaaattgaaatcaaagaaccaacaaaggtagaaaagagagcagataagaagcggaagtcttctgagaagccagccgataaaaaggaagctaacaaacctccagatagttggtttgatctcaaagttaacacacatgtctacgttactggtttgcctgatgatgtcacagctgaggagattgtggaggtattttccaaatgtggaattataaaggaggacccagagacaagaaaaccccgagtaaaaatctatactgacagagaaacaggcagaaagaaaggtgatgcgctagtgacctacctcaaggagccttctgtagcactagcaattcaactgttggatgggacatcatttcgccctggtggtaagactctaatgtctgttagcccggccaaatttgagcagaaaggtgatgttttcatttctaagaagacagataagcaaaagaaaaggaaaaccaagaaagttgaggataaaattctaggatggggtggacatgatgacaagaaggtgacgattacaactacagttattttgaggcatatgttcactcctgctgaattgcgagccgatgaaactcttcttcccgagcttgaggcagatgttagagaagaatgcatgaagcttggtccagttgataatgtcaaggtctgtgaaaatcatccagagggtgttattttggtgaaattcaaagaccggaaagatggtatcaaatgcatagagaagatgaatggaagatggtttggtgggaatcaaatccaggcgagtgaagatgacggttctatcaaccatgctctgatccgtgattatgatgcagaggtgtcaaggcttgatcgatttggagaagagttagaagagtccacatag</cdnaseq>

Protein Sequence

<aaseq>MEGGGEVGWYVLGPNQEHVGPYALSELREHFANGYISESSMLWA EGRSEWMPLSSIPDLLAVVTKKDQPDEGIEDDFDKFQKEVIEAEAEVEASTDKAADND INQEHGADDPDDRPATPPDGEDEFTDDDGTVYKWDRVLRAWVPQDDLEGKNDNYEVED MTFAHEEEVFQAPDIAGSTTLEENNVSAEIEIKEPTKVEKRADKKRKSSEKPADKKEA NKPPDSWFDLKVNTHVYVTGLPDDVTAEEIVEVFSKCGIIKEDPETRKPRVKIYTDRE TGRKKGDALVTYLKEPSVALAIQLLDGTSFRPGGKTLMSVSPAKFEQKGDVFISKKTD KQKKRKTKKVEDKILGWGGHDDKKVTITTTVILRHMFTPAELRADETLLPELEADVRE ECMKLGPVDNVKVCENHPEGVILVKFKDRKDGIKCIEKMNGRWFGGNQIQASEDDGSI NHALIRDYDAEVSRLDRFGEELEEST</aaseq>

Gene Sequence

<dnaseqindica>151..235#922..1050#1144..1367#1745..1954#2044..2136#2246..2284#2388..2477#2561..2663#2735..2815#3276..3352#3503..3583#4512..4603#4883..5009#ggaaaccccagcctccaaaccgcgcccccaaattccccctcttccgcctctccggccgccgcgtcgtacacaacctcgcgccggtgagcggcggcgccgacgaagcaggactccctccgcccagccccattctcccgcgtggggggatccatggagggcggcggcgaggtgggctggtacgtgctcggcccgaaccaggagcacgtcggcccctacgcgctctccgagctgcgaggtatcctcctcttcctcccctggacacccacccttttccgccctatcgactagtgcgaatgggggcgtgcccccaccttctcgtagaatctctagaaactttcggagcctttgctccaatctgcaaggcccccctagcccttgtctggcgttcgctgtgtgtattatcgactattagtcatgatgttgaacatgtagtaaggcgaggcgaatcctagcttcgggtactgttggattggggcgtgttacaatgagatggtggtttaccgttttgagctgtgaatggatgttcccatggatttgggtgtaatgttgttagtagctgatcaacagtatcgagtctgatatttgaggtgatatgtggtgtgtgtttgtcatatcacgggaaaaccagttagttgttttttctgtcggttgcgtggtcaccactattccgtatagttttttactcggaagctgggcagaggcagtaggtgcatatcggaggagctgttcgttgaggcagattgttggagctagggttaaggtcatgcaataaattgttcatgtttgtgtggcaatatattgtcgcagttaacctcttactcttgtttttccttctgaagatgaccttgattaatctggaataatgtttcatttcctatctttgttgtgatctgtacatgtggaattttgctccatctgcagaacattttgctaatgggtacatcagtgagagctcaatgctctgggcagaagggaggagtgaatggatgccattgtcgtcgattcctgacctacttgcggtggtcacaaaaaaggatcaacctgatgaaggttactgatttctaccttctgttttaaggaaataatacagaatacacttcacgtgatctcctgacattttctttaatctttctgatgccccaggaattgaagatgatttcgataaatttcaaaaggaggttatagaagctgaggcagaggtggaagcctcgacagacaaggctgcagataacgacataaaccaagaacatggggccgatgatcctgatgaccggccagcaaccccaccagatggcgaggacgaatttactgatgatgatggtactgtttacaagtgggatcgtgtcctgagggcatgggttcctcaagtgagtgcttccaacctcctgttcttaggttcatttactcatgacttttgtttttggtagttctgattttgcctgagatattaattagatattgtgttttgttctaattaatactgtaaattgtggttcatcagggagtcacatttgtttcttcttggttgcttctagtgttaatactgtcaatgcttgtgctatagcgtagataatttttaaaaagaatccatattgcaggaggagtgtgcttcctttcaggatataaatgctttcccttcttcgtcctgtttaataatctcgcttacaagtatttataagttaatctaatttcttgtgtcatcaacatttgaaagttaatatgatttctactgtttctttcgcaggatgacctagaaggcaaaaatgacaactatgaagttgaagacatgacttttgcacatgaggaagaagttttccaagcaccagatattgctggttcaaccacattagaagaaaacaatgtttctgccgaaattgaaatcaaagaaccaacaaaggtagaaaagagagcagataagaagcggaagtcttctgagaagccagccgataaaaaggtatatacaagtaatttttgtctaagtgcttgactagttttccataagctaattctttgaaactgttaactttctttttatatatgtaggaagctaacaaacctccagatagttggtttgatctcaaagttaacacacatgtctacgttactggtttgcctgatgatgtcacagctgaggaggtaagttgcttatatctttaaaagcactttgtatgctttgaatgacctatttaacacattcatgattatgtaaatagtgtctggttttgatggtgaatttcttttgcagattgtggaggtattttccaaatgtggaattataaaggaggtatatttatttttgagttgcagaggcaacttctatccttgaattctgatgcagactgttcttcgcttctgatgatttcacatctaaatttttggtgacataggacccagagacaagaaaaccccgagtaaaaatctatactgacagagaaacaggcagaaagaaaggtgatgcgctagtgacctacctcaaggtagtcccttgtaaagctcatctgattagaagctctcgttatgctcggttatcatgtgcgttctttggttttctattattcaggagccttctgtagcactagcaattcaactgttggatgggacatcatttcgccctggtggtaagactctaatgtctgttagcccggccaaatttgagcagaaaggtaagcagagtatttgtcagaaacagataagctatgcagaagatgttactgatgctgtcaatctgcttcaggtgatgttttcatttctaagaagacagataagcaaaagaaaaggaaaaccaagaaagttgaggataaaattctaggatggggtaagttctattttttatggttattttgaatttgtgatgtgctgcaaattacactatgtgatgggttttggttgtcaatattcgatgtagatgcagccctatcgtagtctatgcaaaatgtttttcatgcttcattatgaacttattgtctgagccttggaagcctattaccaattctaatttgctaatggaaggttatatccccactgcttgcttgcatcattttttttaatcttttcattttatgaaggaatactgaagagagacacagaacattatgttacagaacaccataaactgttttttgtattcaggatgttgattaagcattatgccattgtataatgagcacatgctttggtagtcatgcaaggaaaatattttatcatcagccgaacatgagctttgaatgatataacttgttttatttctttgtattgtaacacttttctgctattaggtggacatgatgacaagaaggtgacgattacaactacagttattttgaggcatatgttcactcctgctgaattgcgagtaagtaactgaagcatgctttgacgtatgccagaagtgtgcccttctgatacaatttcttaattgtttgattagtcccatggatttcattatgcatagcaacttcttatgttttatttggattgaggaagaaaatcttgatcatttcaggccgatgaaactcttcttcccgagcttgaggcagatgttagagaagaatgcatgaagcttggtccagttgataatgtcaaggtaatcattaacttcgcctttctttgtttgtcttgccatcatacaagagctggagtgtaaaatggaactgcttgtgtgtagcatgttttggatccattatgcatgtataactctcttgtaattccactccaaatgcttaccagacttccttttagctgcttcctttttcatctagtcctgatgtgtacaggagcaacatggaatgcagtagttcctagctgcagtttctgatatggtttcctatatcacttttggagtttagcctctgtacaacactatgactaaatgcataggaggtaattgcatctgcattctacagaaaggctgctgctggcatgagaaatgctctccattaaaaggccttacaaaaataaggatgggaaaaggttactcaattgatgagtgaggcatgctgagtaactaaggtgatcaaccttgccatgggccggtgcgtcggatttcatggggccatccttatatggtactctctccgtcccaaaatataagcatttctagctacgaatctggacattagctagaaatgcttatattttgggacggagggagtaccttgcttacactagggaacaaattgaatgcccaacacatgtatatgtaataactcttatggttcttaaataactcgagatcattgctctatggggctactattaccattccaggcctggtaggacttccatcacaaaaggttgagttgaacttagccagaaatttgggttggctgggccttccgtttatcacaaatttaacttggctctaaaactggatcctgttaatattccttttaagttttcatattattgttgactatctataaactcagtgaactggtcctaaccaccaggaaattgtttttgtccttttcaaccatcccacttacgttcaacgcacatgtttctgcttgcaggtctgtgaaaatcatccagagggtgttattttggtgaaattcaaagaccggaaagatggtatcaaatgcatagagaagatgaatggaagatggtaggcttcaacataatatcagttagctcaccttggtttctgatgcgttgatgttccagtaaaatagtgtgtttaatctgcataaaccttgagtttgccaaatgctcagttatatcaattttagatgttcacagaaactatttgtttgaatgtgagtgctttgagtaggatagtactcttgggtgttggaattgtgcatgcttgcttttcaacctatcgaagaattagaatttgtggatcattcgttttatcaattgttcttgatttgttccttcgcaggtttggtgggaatcaaatccaggcgagtgaagatgacggttctatcaaccatgctctgatccgtgattatgatgcagaggtgtcaaggcttgatcgatttggagaagagttagaagagtccacatagcacgtcgataaactggcgattaatattactctgcagctgatggtcgatcaactggcgtttaatattgctctgtagctgatggtcgatcaactggcgatcattaatgctagctgatagcatgagagtacaaagttttacagttagctctttgcgtaggttggatcttccatttgccatgttaatcttatcaaaactgcttctgggttttaccttctatcaccaccagtacgtgtacattatatagattaaactttttttttcctgattaacatgttcgttttgacatattaacttctacttctaggcttgtagcaacttgctatcctccttggtatgcataaatccacactgatgata</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0496400, RefSeq:Os04g0496400