Os04g0538100

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Revision as of 11:20, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os04g0538100| Description = The start codon is not identified.| Version = NM_001059965.1 GI:115459659 GeneID:4336525| Length = 1832 bp| Definit...")
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Gene Name

Os04g0538100

Description

The start codon is not identified.

Version

NM_001059965.1 GI:115459659 GeneID:4336525

Length

1832 bp

Definition

Oryza sativa Japonica Group Os04g0538100, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:27316461..27318292

Sequence Coding Region

27316672..27316845,27316934..27317446,27317818..27318291

Expression

GEO Profiles:Os04g0538100

Genome Context

<gbrowseImage1> name=NC_008397:27316461..27318292 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:27316461..27318292 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>gctttcaagatcatgactgacccatttgtgggatcattgacatttgttcgcatatactctgggaagctggttgctggttcatatgttctcaatgcaaacaaagataagaaggaaagaatcggaaggcttctagagatgcatgcgaacagtaaggaagatataacagttgctgtggcaggtgacatagtagctcttgctggtctcaaagatacaattactggtgaaactcttagtgacccagataagcctgttgtgcttgaacgcatggaatttcctgatcctgtcattaaagttgctattgaaccaaagaccaaagctgatgctgacaaaatggcaaccggactaatcaagcttgctcaagaagacccatcattccacttctctagagatgaggagaccaaccagactgttattgaaggaatgggagaattgcaccttgacatcattgttgacagattaaagagagaattcagggttgaagcaaatgttggagctccgcaagtcaactaccgtgaaagtatttccaagatttcagaagtacaatacgttcacaagaaacagtctggtggatctgggcaatttgcggacattattgtgcgattcgagcctttggaggctggaagtgggtatgaattcaagagtgaaataaagggaggggcagttccaaaagaatatgtaccaggcgtgatgaagggaattgaggaaagcttgcccaatggtgtccttgctggttaccctgttgtggacctccgagcggtgctggttgatggctcataccatgatgttgattcaagtgtcctggcattccaaattgcagccagaggtgcattccgtgaaggattgaggaaggctggtccaagactcctggaacctataatgaaagttgaggtgataacccctgaggagcatttgggtgatgttattggtgatttgaactccagaagaggacaggtcaatagcttcggggataaacctggtggcctgaaggttgtcgatgctttcgtgccacttgcggagatgttccagtacgtcagcacgctgagaggaatgaccaaggggcgcgcgtcttacacgatgcagctcgccaagttcgacgtcgtcccacagcacatccagaacgagctctctgcggcgaaacaggaggaagctagtactgcttaa</cdnaseq>

Protein Sequence

<aaseq>AFKIMTDPFVGSLTFVRIYSGKLVAGSYVLNANKDKKERIGRLL EMHANSKEDITVAVAGDIVALAGLKDTITGETLSDPDKPVVLERMEFPDPVIKVAIEP KTKADADKMATGLIKLAQEDPSFHFSRDEETNQTVIEGMGELHLDIIVDRLKREFRVE ANVGAPQVNYRESISKISEVQYVHKKQSGGSGQFADIIVRFEPLEAGSGYEFKSEIKG GAVPKEYVPGVMKGIEESLPNGVLAGYPVVDLRAVLVDGSYHDVDSSVLAFQIAARGA FREGLRKAGPRLLEPIMKVEVITPEEHLGDVIGDLNSRRGQVNSFGDKPGGLKVVDAF VPLAEMFQYVSTLRGMTKGRASYTMQLAKFDVVPQHIQNELSAAKQEEASTA</aaseq>

Gene Sequence

<dnaseqindica>1448..1621#847..1359#2..475#agctttcaagatcatgactgacccatttgtgggatcattgacatttgttcgcatatactctgggaagctggttgctggttcatatgttctcaatgcaaacaaagataagaaggaaagaatcggaaggcttctagagatgcatgcgaacagtaaggaagatataacagttgctgtggcaggtgacatagtagctcttgctggtctcaaagatacaattactggtgaaactcttagtgacccagataagcctgttgtgcttgaacgcatggaatttcctgatcctgtcattaaagttgctattgaaccaaagaccaaagctgatgctgacaaaatggcaaccggactaatcaagcttgctcaagaagacccatcattccacttctctagagatgaggagaccaaccagactgttattgaaggaatgggagaattgcaccttgacatcattgttgacagattaaagagagaattcagggtaagtattctgattagctttattgtttctgtacatgccccactcccccacgtaattactctacattcatgcgcaaatcatattgaacggttgttattgtgcttataaaccacaccatttcctatgtgcttagattttcccttttcctcagctaagctaagagaaactacctgataagatagtaaaatgttcttttggttagcttatttatttatgttctatgacttaatagctcggttcttcaattatgccacttatctcaccaaataatcttattaaagtcctaggaatagaagcattccactagttttttgtattcataattgcacccaagagttttaacttgagctcttaaatatgcaactgcacaggttgaagcaaatgttggagctccgcaagtcaactaccgtgaaagtatttccaagatttcagaagtacaatacgttcacaagaaacagtctggtggatctgggcaatttgcggacattattgtgcgattcgagcctttggaggctggaagtgggtatgaattcaagagtgaaataaagggaggggcagttccaaaagaatatgtaccaggcgtgatgaagggaattgaggaaagcttgcccaatggtgtccttgctggttaccctgttgtggacctccgagcggtgctggttgatggctcataccatgatgttgattcaagtgtcctggcattccaaattgcagccagaggtgcattccgtgaaggattgaggaaggctggtccaagactcctggaacctataatgaaagttgaggtgataacccctgaggagcatttgggtgatgttattggtgatttgaactccagaagaggacaggtcaatagcttcggggataaacctggtggcctgaaggtagcacaaaatatatcctttccctttattagccatacagttgaaatgtggcctgagacttacagtggtatattattatttgatgcaggttgtcgatgctttcgtgccacttgcggagatgttccagtacgtcagcacgctgagaggaatgaccaaggggcgcgcgtcttacacgatgcagctcgccaagttcgacgtcgtcccacagcacatccagaacgagctctctgcggcgaaacaggaggaagctagtactgcttaattttttttccagattttggtagatatactaaacggcgacaccggagcaggtggataataggacatccaagtgtatgtagctttgtagcgtcaagcccctcggggagatattgtttgccattgttttggacctgataatggccttgtcaagttcttttcttctttttgaagactgccttgttaaggttttcagaagagaaagcggtacctat</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0538100, RefSeq:Os04g0538100