Os04g0558400

From RiceWiki
Revision as of 11:22, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os04g0558400| Description = Acyl-CoA thioesterase family protein| Version = NM_001060068.1 GI:115459865 GeneID:4336637| Length = 6415 bp| Defin...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os04g0558400

Description

Acyl-CoA thioesterase family protein

Version

NM_001060068.1 GI:115459865 GeneID:4336637

Length

6415 bp

Definition

Oryza sativa Japonica Group Os04g0558400, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:28382650..28389064

Sequence Coding Region

28382789..28382804,28382880..28382972,28383671..28383738,28384204..28384285,28384420..28384466
,28384576..28384701,28385080..28385155,28385664..28385753,28386149..28386261
,28387203..28387265,28387337..28387392,28387729..28387821,28388085..28388141
,28388218..28388319,28388405..28388453,28388545..28388613,28388713..28388799

Expression

GEO Profiles:Os04g0558400

Genome Context

<gbrowseImage1> name=NC_008397:28382650..28389064 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:28382650..28389064 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggatcgggaagaagtgacggagttcctcggccaggtgcccctcctgcagtgcctccccagctcctccatccgcaggatcgccgacgccgtcctggtgaagcgctacgaacctggtggttacgttgctcgtgaaggtgaccctgtagatggcctttacatcatattggatgggcaggctgaggtttcagctcctgcaaacacagaagaagaaaaccgccctgactatgtgttaaataagtatgactactttggttatggaaccaatagttctgtgcatcaagtaaatgttattgcagtatcaaagctgacctgcttcgtattgccaaatcaatatggacacttgttgcaaccaaagaccatttggagtgcagaagagacacctgagaaccattctttgctagaacaaattttgcacttagagccattggaggtcgatatcttccgtgggtttactttgccaggagctccgacttttaggcaagtttttggaggacagttgataggacaggcactagcagcagcatccaagaccgttgactgcctaaaagcggtgcacagtttgcacgcaattttccttatcgcaggagacaagaatttgccaataatatatcaggttcatcgggcgcgcgatggaacaagctttgccaccagaaaagtggaggcaaagcaaaagggccttgtcattttcaccttgattgcttcattccagaaagacgaattagggtttgagcatcaagctgcaatcatgcctgatgttcctcctccagaagagctcctgaatctggaagagatacgggaaagaagacttactgatcctcgcttcccaatgcaatataggaactcagctgccaagaaaaagttcgtaccttggcccatagaaatgaggttttgtgaagattcagcatctcaacataaaccaagcttaaattattggtttagagccagaggaaaactttctgatgatccagcactgcataggtgtgttgtagcatatgcttcggatctactatattctggtgtcagcctaaatcctcatagggagaagggtctgaagacatactcactcagtcttgatcactcgatttggttccacaagcctgtgaaagctgatgattggcttttatatgtgatcgacagcccatctgcacacggtgggcggggttttgttacagggcgaatgttcaaccgacaaggagagctcgtcatgtcgttgacccaagaggcgctgattaggagggcgaagacgccaggacaaccgtcacaaaccccaaggccaaagctttga</cdnaseq>

Protein Sequence

<aaseq>MDREEVTEFLGQVPLLQCLPSSSIRRIADAVLVKRYEPGGYVAR EGDPVDGLYIILDGQAEVSAPANTEEENRPDYVLNKYDYFGYGTNSSVHQVNVIAVSK LTCFVLPNQYGHLLQPKTIWSAEETPENHSLLEQILHLEPLEVDIFRGFTLPGAPTFR QVFGGQLIGQALAAASKTVDCLKAVHSLHAIFLIAGDKNLPIIYQVHRARDGTSFATR KVEAKQKGLVIFTLIASFQKDELGFEHQAAIMPDVPPPEELLNLEEIRERRLTDPRFP MQYRNSAAKKKFVPWPIEMRFCEDSASQHKPSLNYWFRARGKLSDDPALHRCVVAYAS DLLYSGVSLNPHREKGLKTYSLSLDHSIWFHKPVKADDWLLYVIDSPSAHGGRGFVTG RMFNRQGELVMSLTQEALIRRAKTPGQPSQTPRPKL</aaseq>

Gene Sequence

<dnaseqindica>140..155#231..323#1022..1089#1555..1636#1771..1817#1927..2052#2431..2506#3015..3104#3500..3612#4554..4616#4688..4743#5080..5172#5436..5492#5569..5670#5756..5804#5896..5964#6064..6150#atctccttcgctttaaattttgtggtagatttttgtctccttcgctctccacgctaccgcctcgccgtgccggagcccgggcgttccccgccgccgagaacctccgcctccgcctccatctcctccgccgccgccgcagatggatcgggaagaaggtaaagcagcgcagagcccgccgaatttaggagcgctcctggctaatccgaggggtggttgccattggtgtgcagtgacggagttcctcggccaggtgcccctcctgcagtgcctccccagctcctccatccgcaggatcgccgacgccgtcctggtgaagcgctacggtgagtagcacacggtccccatcactgtatcactcgctctagtttttgcgaccttcgattggttggtggttatggtgaacgtggcggcggcggattcctgatgctcgttggtgggagatttttttttagattagtaaattagcggtattctccaattgcgtacccgatttttgtggagctcgctggctatgtttgatttgctgctgtgtatgtatatgtataggtttaatcaacttgcttaaaaaggtgactattagaggcttagagcatcaccccctataatagggtgcttccattcaacgcccaagctagctactataagattcattttttttagaacaataacaatgttatagattttctttatagatcatggggaactggggatatcattggcaatagtacacattgatttgacatgtaatgcttgagagaaaattggtatcagttcaataacgaagatcaggcatccaaatccttgcaagcgaggactcaagcctgggtgttcacctacgcctgccacctacctcacttcctctcactgatttagtgatttttagttctcaacgcatgtttggcattatcccctttctagagaagtgttgtttctttttttggtactgaaagtgaatgtggtttcaagttggaatcaagctgattacatgtctgttcgttgtgatacttttcgaattttgcagaacctggtggttacgttgctcgtgaaggtgaccctgtagatggcctttacatcatattggatgggcaggtatgaattggagtatattatttctttgcttagcatttattggcttttatgattaccatactttgggaacaaatatgcaagctgtcatttagccagttgtcagccggattcattgactagtactgtttgtggctgttccaactaccacgctggaacaattgatgaattgttctttaaaaaaatattcggtcatattttgcagcaatgatcatttatgctgggacttggggtgaaggatcagtttgtactttgtagtttcacactttcagagtatcattgttgtcctgatagccagttcctttgctcctgccataactgaatgatataatccaactgttctactctcatgtttttttttgttattatcatagtttatatgatcagttacattatccttgtgatctactgatgaagcagaggccatggaattctcagtattaattctccatctgcattatattgcaggctgaggtttcagctcctgcaaacacagaagaagaaaaccgccctgactatgtgttaaataagtatgactactttggttatggtaagaactatcattacatgacttctgatttttatagtagttcctttttttttatcaagtatataaaccattttttataagatacggagcagctctgtttgcgtactattctaatattctgcattgttttgtaggaaccaatagttctgtgcatcaagtaaatgttattgcagtatcaaaggttccttgttcatgtttctatttttaataacagtataagctgatggtgtccctactgtaataataaatatcttctggcttcagcttattgttagtatcctattttgcagctgacctgcttcgtattgccaaatcaatatggacacttgttgcaaccaaagaccatttggagtgcagaagagacacctgagaaccattctttgctagaacaaattttgcacttagagccattggaggtaagtctaaatgtgttgtgatgtttctgttttgtaaaggtatatatcactttacagtatgattactgtgctgaaaaattatcaggtatcctagttcgtaagatcttatgacttatatactacatacgctaattttgtagctctaccattctttttaccaccaacagcgtgttaagtatcacccattagaggttaacctgatttagattattaatagatcaggctttcatttacatcatctaaaagagacaatttaaggtggatttgcagtttcatatttacacctcctatttataagtggaaagggcaaaatattttgtcacagcaagtcaaatttaagtctgtaaactttctcactgtaatcattatcttttttaggtcgatatcttccgtgggtttactttgccaggagctccgacttttaggcaagtttttggaggacagttgataggacaggcatgttccaactaaaatatcttactttctattatcaatatctgctggatgtttgtatttcaccacttcctttttctgttatgttgcaacattcatatttaagtagaagtgcatgaatccatttgtgaaaaataaaagataaaaaagggagcttctttaacatgcttctgaatcatttttttgctgctttttggaaaacttttggactttcctcgttgatcacagagggccagtttttgtaatagcatggatgtaagtgccaaaggaggaaaaaacattgtaaaggcggttcacataggacagcattattttgctcaaacatgttttcttcaatggtatattaatcttctgattaaattgttaaattgtttgtccatgaaaattgtttttccactactcattctcatgcactcccaaaagaaagttcaaacactagaaagagtacacacatccatgtcaaagattttcactatgtctgaactttgtttgttattggaccctcatgtaggcactagcagcagcatccaagaccgttgactgcctaaaagcggtgcacagtttgcacgcaattttccttatcgcaggagacaagaattgtaagttctctaagcttgtgtagtagttctcttctcaatcaagttgaatttaaactactccaacaaaaaatgcaattttgggaaccactagtctatcatatcacgaagaggtgacctaagaagaaaccaatgccaacaaaatgtaactttgataaccactagtctattagatcaagaaaggatggtttaagacaaagctttactctgccttccaaattatgcattgtccctgacttagaaatgagcagtggattaatttgtgcaaacttttttatgagtctatcttttgagctgtcatcttagtaagctgcaaataattatgcagtgtaattttatttatttgaaaaaaagaataaatctgatcatgtctgtttctgttttgtcctctgttgtagtgccaataatatatcaggttcatcgggcgcgcgatggaacaagctttgccaccagaaaagtggaggcaaagcaaaagggccttgtcattttcaccttgattgcttcattccaggtgtttatccttctggtacccagttttgtgaacaatgtacagcctcaggaaaattttggcatattagtattgatcaagcatttgattctctcgatggcttccattttgggcctgtttggttctcttccattgctagccttgccaattttttggcaatggcaagatttggcaagccaaaaaaattggtggaggtggctgttttgagtgataccaaaatttttagactaggctagtgcttaagttaaccaaaccaaaaaaaattggcaatgacaaatttgtggcttcattcctacaaaccaaatgagcgacatttttgtagcagtgcattatttggtaaggttgggtttggcaaagaagcaaacaagctcaactccctcccatcataaatatttggtgtttaggacaagaattattaaaacttttgaaacttcgaccatgaatagcttctcaaatgcttagtttaaaaacaaaaaatgggtatagacagatttatttttaaaaataatatcttaatatcatgaacttactagatttggtaagcctattctaatataaaactgatagttaaagttttaaatgtttgacaatcttgtcctaaacgtcaaatatttatgaccatagggagtaaaattttaactacacttttaacaatatattacagtaaaggtagtggtcaaaactgtgttgtggagaccacatcattgtttataaactttttttgtgactagagggaccagtagaatgttctttttgcaatattcaatattcatactgaacgctgtcaacgataacgaactgtttgaactcttgttaaatcctgaggaaatgtgtattttcatgtttatactactttatacattaagccaaaaggttcgtgagactaaatctgccagcagaagaatagatggtatctaacttctgcatgatcaattatgttgcagaaagacgaattagggtttgagcatcaagctgcaatcatgcctgatgttcctcctccagaagaggtaattttttttcctttcctgtaatgtatatgggaaagaagaattgataattaataggtaatcaaatgcagctcctgaatctggaagagatacgggaaagaagacttactgatcctcgcttcccaatgtaattttcatgacttccaaccatatatttgatgatgatagtttcctagctaatgcagttctcagatgattcatctttaatcttcagaataaacttcttttatgttattgagaaagcattatatttgtcaccatttatttctcggacactatatttgtcaccattactcagatgaatctagcatctggtattacataaattagaaattatctggtagtatttctcacgtttagtaaatcaagcattctatcttcttaagcttcaattataactgtatttggttcgtgccacagtcgcatgccacctggcaaagtcttgactgttagtcatctgcaggcaatataggaactcagctgccaagaaaaagttcgtaccttggcccatagaaatgaggttttgtgaagattcagcatctcaacataaaccaaggtatgtacacactgtgttttctttcagtgcagcctgctcataccttctctcctcccctagttggtgataactgataagtttaccacgaaattcttgtgtactttcatattcacgattctaaattccactgtgaaaacatccaattttaattccattgtgcaagaatttatcgcatttcctgctacattgcaatttaatacattgttctgattcattagtgcatctattccattatctaaaaaaatgtatccaatttctttcagcttaaattattggtttagagccagaggaaaactttctgatgatccagcactgcataggtttgccatctaatcactataccgtgtttcttgtattatagatgattgggcacgacattaaaccatggtattacaggtgtgttgtagcatatgcttcggatctactatattctggtgtcagcctaaatcctcatagggagaagggtctgaagacatactcactcagtcttgatcactcgtatgtttcagcaaaccgcacccagtactgcgattttaattaatacaactcgctagtaaaccgtttgtttgttactgttctgcaggatttggttccacaagcctgtgaaagctgatgattggcttttatatgtggtaagccattgatttttacctctcaaatgatacacaaaactaaatttctgcttgaggttcttatggcaacaccttcccttaataaacacagatcgacagcccatctgcacacggtgggcggggttttgttacagggcgaatgttcaaccgacaaggagaggtatatgccttcgttgtttcaaagcttagttcagttctgcattgcttctgtgatggaaatgtttatcaacttactatgatgtcttcgcaactgctttagctcgtcatgtcgttgacccaagaggcgctgattaggagggcgaagacgccaggacaaccgtcacaaaccccaaggccaaagctttgagaggtgcagaagagcagtattatcgtttcatttttggcactttcacagttattttccttttcaatggaagtctataacacgtagacgtgaagccgaagtatagcatactgcatatatgtagcaagaaaaaacgatggtaaaactggttctgtaattcacgaacagcttactgacataccacgtatgtattggatcgggaaaaataagcgaagaacttggtatcgctttttttttatctcaataaagccttcaattatttcaattt</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0558400, RefSeq:Os04g0558400