Os04g0562000

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Revision as of 11:22, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os04g0562000| Description = Zinc finger, DHHC-type domain containing protein| Version = NM_001060091.1 GI:115459911 GeneID:4336661| Length = 534...")
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Gene Name

Os04g0562000

Description

Zinc finger, DHHC-type domain containing protein

Version

NM_001060091.1 GI:115459911 GeneID:4336661

Length

5346 bp

Definition

Oryza sativa Japonica Group Os04g0562000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:28529613..28534958

Sequence Coding Region

28529799..28529865,28529942..28530056,28531697..28531771,28531854..28531925,28532043..28532177
,28532263..28532320,28532967..28533076,28533789..28533875,28534000..28534083
,28534439..28534504,28534604..28534778

Expression

GEO Profiles:Os04g0562000

Genome Context

<gbrowseImage1> name=NC_008397:28529613..28534958 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:28529613..28534958 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgccacgctgcggagccggaggtccctgcgtgtggatccgggccctatcccagccgcaacgccacgggaggaagccatggcggggcgtgagggtcgtcgtgctgctgctgcacgcgctgttcatcggcgccgtcttcctgctcgatccgacgctccagaggcaaatccacgaggccaagtggtacataattctatatgggttgctggttttacttaccttggtacaatacctatatacagccacttcttctccaggatatttacctgatatgttgacagctggctcaaggatgcatgcaacctttattaatacaacaactctctcaaagcaggccaattccaaaagtggaagcttaaactctgccatgagtcgcagcaaaatagatcagcaaaatccacaatccactacagctttgttactacagcagacgatggatctatatcctcctgggacatccaccagttgtatgcctccattttattttagggatttcacatgctcttactgccggctcatccagcctccacgcaccaagcactgtcatgactgtgataaatgtgtcctccaatttgatcatcattgtgtttggcttggaacatgcattgctaaaaggaactactgcagattttggtggtacatattcgaacaaacagttttaactgtctggactgttgctttctacattcagttcttttatttgggcatcgttgtatcctggtggaagtttgctattggtattgtacttttggtagcattgatattaatcctcgtggtcctgctgcccttgttgatattccatgcttatcttgctcttacgaaccaaacaacatatgaaattgccagaaggaagcggatttcttacctaagggaggttcctagcagggttcatccattcagcaaaggcatttgcagaaatctgtatgatctttgcatctctaaacagaggggattttttctggaagcagtgcccccgctggaggtactacaagccagagctagaccttacacatgccgagatgtaatctcctgccggtgctgttag</cdnaseq>

Protein Sequence

<aaseq>MPRCGAGGPCVWIRALSQPQRHGRKPWRGVRVVVLLLHALFIGA VFLLDPTLQRQIHEAKWYIILYGLLVLLTLVQYLYTATSSPGYLPDMLTAGSRMHATF INTTTLSKQANSKSGSLNSAMSRSKIDQQNPQSTTALLLQQTMDLYPPGTSTSCMPPF YFRDFTCSYCRLIQPPRTKHCHDCDKCVLQFDHHCVWLGTCIAKRNYCRFWWYIFEQT VLTVWTVAFYIQFFYLGIVVSWWKFAIGIVLLVALILILVVLLPLLIFHAYLALTNQT TYEIARRKRISYLREVPSRVHPFSKGICRNLYDLCISKQRGFFLEAVPPLEVLQARAR PYTCRDVISCRCC</aaseq>

Gene Sequence

<dnaseqindica>187..253#330..444#2085..2159#2242..2313#2431..2565#2651..2708#3355..3464#4177..4263#4388..4471#4827..4892#4992..5166#ggtgggcccaggtcgtccccacacgacagcgctccgcctctccttcccgactccaccgaccccccgccgagctttctcgcctcccgcgaagtcgccaccgcgcgctgctcgtccgtcgtcgccgctgcatccgcctcctcctcgtcctccctacggccgtagggtgcggcggcggagggggcgacgatgccacgctgcggagccggaggtccctgcgtgtggatccgggccctatcccagccgcaacgccacggtgcgcgctaccgttgtttggttcgattttggctgtggttccgatttcgctgtgggtcttaccgatttgtgcgcagggaggaagccatggcggggcgtgagggtcgtcgtgctgctgctgcacgcgctgttcatcggcgccgtcttcctgctcgatccgacgctccagaggcaaatccacgaggccaagtggtacgagtacgaccccccccccccccccccttgaaatttctccgaaatgtttccgtcggagttcgtgttattggtttctgtttgagctatatggagtcgatttgctcctagcttcgggtggcaactagggctctttacatgggcaacatttcgtcgggtcgtaattggcaattggcttgtgtcaggtcgcagcctgctttagttgagagcaagcatggtttttatgtatgccttctatctgcaatgccgtctgtgaggatgatgtcgtgaaattactgggctgagagccttccagcatgttataatagtgtaaattgtatttaagtttgatatagaaaaagaaggattgcgtgacatgtttggacaattagcatggtgtcccgcaaatggtgacatgggggctaagggcatattgcttggcactcatttgtttcgttcatcctattcaacacctgaattaatagaagttttaaatggaacaacatgattgccgtatgattttcaccaaatatgttgtctaaaatttgtagtttactatggacatgccagggtaaatctgcttcgaacaatgctgcagtagcattatatcatgaactttataataatattaatggataaagcggcatgttattgaccttgaaaactaaaaacaacatattttgttacttagataacaattcgatattccaaactaagatagtataagccataaagcataccgcatacacctgatggaaactgatggtttttgtttgtaatttagagattgttgtctcagatgttctagtgcacattttatgacttggacaaagtgaccttcataggaactgaataactatgctactagaacataagtgaattataaatgcctattgatcaataattcaatagatacaatgtgttgctcccttccttccttatcaagctaccaaggtattatcggaaccacaaatcactttttactgttaaaagttgatgaaaaacgtgtttatttaaaatattatatagtccatagaccatgtgcatatttctttgttcatcttgttgtccttgagctatatgtgaaaatagagcatcggatcaaaagttgtgcctatatttaaaaaagggaacatgtatgtttaacaaccagtgctgacatgatgatggcatcagcagacctttgcccctttcctataatccacatgcacgtacttcttcttctagcaggtccacgtgtatgtgctcagttctcatgagacccgtgttagccagcttttgaagttttaaaaaccagcagttatgctttattgacacatattttcaatgagggtccactgaatcaatggccagatgtttttttttccttttttgtgagaattcgtgattcttctctcttttcttagcacttctaaaaggcctttgaccaactcttatatgtaatatgtagtttttttttctatttttatcttagcacctctaaaaggcctttcactaactattgtatattatatatactacagctgaatgtcagctgatgctgtccagcctatttggaaactgaaaacactattgtgtcatttctctgtttatatgtatatctagaagaaattccatcacccctctatttaatcttattctacaatctgctttgatggcaggtacataattctatatgggttgctggttttacttaccttggtacaatacctatatacagccacttcttctccagggtaattgatccttgcggatgttgaagttttccctagatgatgacacttatacgttgcgtttacttgactcttgtgctgttagatatttacctgatatgttgacagctggctcaaggatgcatgcaacctttattaatacaacaactctctcaaagtaatgtcttactttatgttgttttgccttatgatatatatgtattttaagtgctgagcctgagtatcgtacaccacttatttatgctaaattaaatgcctttgtgattaagaaaaggcaggccaattccaaaagtggaagcttaaactctgccatgagtcgcagcaaaatagatcagcaaaatccacaatccactacagctttgttactacagcagacgatggatctatatcctcctgggacatccaccaggtacacctgtttatgtttggaatttatgctgctgaagtgtaatattcaatatcttttgtcatgtaatttctgtcctgtgatacagttgtatgcctccattttattttagggatttcacatgctcttactgccggctcatccaggtatctttggttttccaaatttggcatccagagatagtattaactgaatacagtgctccaaaaatatacaaaaacaaagataatttgacttgacataatgtaggtctttcaaggatgtaacaaactaacaatctgcattttgtaggaggtatgcttattatggtgattagtcttgtgttatgccaatgtactgaatgacaggaccagtgtatcttagattatggcatgtgccaatcgccctattttttttgtatctactaagttgaatgttggtctgccaatgtatgacatgaccagttatgactactagcatcctttctcatcagtgtgtccagtcttaagaccccttatgctttccaaagtccaaacgataatgagagtttctctggcttgatttttgagaagtcataaccatcaccagtcacaatctatctaattagaaaaaggtagacactatctgaaaaagagagaaggacacactgaacttcttttccttcatgaacacaccgtgctatgctcgttgttcttctcaattaactttgtaactgctcacatttgtatgcattatccatattttttagttactacaaatttcattcatactagcgtgtctgaagttttttgtcctgtctactaccttttgcagcctccacgcaccaagcactgtcatgactgtgataaatgtgtcctccaatttgatcatcattgtgtttggcttggaacatgcattgctaaaaggaactactgcagattttggtgagttctgaatttatatattgtgcagcttagtttgaacatatgcttctcaggtgcagcataatatcctgtgtggtgtatgtcatgcaatctctacataagcacccgagtgtcctgcttcagttaacatgtgtttattgtgagaaatcaattatttgtgtgctcatccatccattatttctttaggtagtcaatttgtgtcttgtcttaatttttgtactccaagtctctgtggcagaactgtagatcgagaaaacctgtatgaagataccaggttataacggttatatgccttttgcctaattatcaaaccatgccctcacactttcttcatcttgattcttatcaaggatttatttggctgcaattaactgtgcacggaagctgtgctaaatcattgccatgcctttcctttaatattgatctagtaggaattagcaggactgtgtgttcccagcaattcattcaacctatacctcccatcttccatagtccagaattctagaagtctgatgcttgttattgtgttacattttcttgaggaggttggtcagggatcatgttagtcttaattcttaggcatcctaaatggaaaaaaaaaaggagctaacatgcctcattgaaatgtacatataacaatctaatgttgttctattatatgactcatcgaaagtcttggcagctatcctcaggacatattaatgtttttcaggtggtacatattcgaacaaacagttttaactgtctggactgttgctttctacattcagttcttttatttgggcatcgttgtatcctggtatgtattttaccccttttagaccctatatgcacaaagatttttcagttgtgccttttagttggtctccagtttgattcgccagacatctcatctgagtatattggttatttttcatggacaggtggaagtttgctattggtattgtacttttggtagcattgatattaatcctcgtggtcctgctgcccttgttgatattccatgcgtaagcttctagtttatatgcctgacaccaaaatagttgaagatctgaatgtcttatgtgtcataaatacacaaaccaaccgtgatccagggtttactacttcggtatgcacaaagctactgcatgcaggggcgctaggaggggggtgggggctgaaattttggaatgaaaaaagtgaaaactgagcaacttttgactaaatttgaataattcacaaagaaaaacaaatgaaaaagtgaaattttcggacgaagggatgtgaaattttggaaattgcaaaccctaccgtgaaccttctgtacaactcttgctggttctggtagttgtattgatgagcttgtttatatgtctgcagttatcttgctcttacgaaccaaacaacatatgaaattgccagaaggaagcggatttcttacctaaggtattagaatggctgaagattagcaattatgcttgtgtatatgtatttgcttgtcattacaacacaagtaatgaatcattggaattgtgccactttcagggaggttcctagcagggttcatccattcagcaaaggcatttgcagaaatctgtatgatctttgcatctctaaacagaggggattttttctggaagcagtgcccccgctggaggtactacaagccagagctagaccttacacatgccgagatgtaatctcctgccggtgctgttaggagcttggtatatgctctatatctggactcactagtttagtgtaatgcaaataatatggtagctataattagtgtctcatttttcatgtacagtgtatgcgcatttttctcctagaaaatctggattgatcgatatccataccttgatctgagtatgctcaaatctggatttttttttct</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0562000, RefSeq:Os04g0562000