Os04g0573300

From RiceWiki
Revision as of 11:23, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os04g0573300| Description = Similar to SBT2 protein (Subtilisin-like protease)| Version = NM_001060149.2 GI:297603214 GeneID:4336727| Length = 2...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os04g0573300

Description

Similar to SBT2 protein (Subtilisin-like protease)

Version

NM_001060149.2 GI:297603214 GeneID:4336727

Length

2763 bp

Definition

Oryza sativa Japonica Group Os04g0573300, complete gene.

Source

Oryza sativa Japonica Group 

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:29277214..29279976

Sequence Coding Region

29277479..29279809

Expression

GEO Profiles:Os04g0573300

Genome Context

<gbrowseImage1> name=NC_008397:29277214..29279976 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:29277214..29279976 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggatttttgcaaggcgagatggaaggttccggcgctgtgcctggtgactgttcttctccaagcaagcctctctgcttgcgcgccaactcccaagacttacatcgtgcagatggcggcgtctgagatgccgagctcgttcgatttttaccatgagtggtacgcttccacggtgaagtcggtgagctcttcgcagctggaagatgaagaggatgatgcttccacgaggattatctacaactacgagacggcattccatggcttcgcggctcagctcgacgaggaggaagccgagctgatggccgaggcggacggcgtgctggccgtgatcccggagacggtgttgcagctgcacaccaccaggagcccggacttcctcggcattggcccggaggtcagcaacaggatatggtccgacagcctcgccgaccacgacgtcgtcgtcggcgtgctcgacaccggcatatggccggagagccccagcttcagcgacaagggcctcggccccgtgccggccaagtggaaaggcctctgccagaccggccgcggcttcaccacggcgaactgcaaccgcaagatcgtcggggcgcgcatcttctacaacggctacgaggcctcgtcggggcccatcaacgagacgaccgagctcaagtccccgcgcgaccaggacgggcacggcacgcacaccgccgccaccgccgcgggctcgcccgtgcaggacgccaacctgtacggctacgccggcggcgtcgcccgtggcatggcgccccgcgcccgcgtcgcggcctacaaggtgtgctgggcgggagggtgcttcagctccgacatcctggcggccgtcgatcgcgccgtgtcggacggcgtcgacgtgctctccatctccctcgggggtggcgcctcccggtactacctcgacagcttgtccatagcgtcgttcggggccatgcagatgggcgtgttcgtcgcctgctcggccggcaacgccgggcctgacccgataagcctcaccaacctgtcgccgtggataaccacggtgggcgcgagcaccatggaccgtgacttcccggccacggtgacgctcggcaacggcgcgaacatcaccggcgtctcgctttacaaaggcctgcgaaatctgtcgccgcaggagcagtatccggtggtctacttgggcggcaattccagcatgccggacccccgttctctgtgcctcgaggggacgctgcagccgcacgacgtctccgggaagatagtgatctgtgaccgcggcatcagtcctcgggtgcagaagggtcaggttgtcaaggaagccggcggcatcggcatgatacttgccaacaccgcggcaaacggcgaggagctggtcgccgacagccacctgctgccggccgtggcagtcggcgaggcggaaggcattgccgccaagagctacagcaagagcgccccaaaaccgaccgcgacgctcagcttcggcggaaccaaactcggcatccggccgtcgccggtggtcgccgcgttctcgtcccggggaccaaacatcctgactctggagatcctcaagccggacgtcgtcgcgcccggcgtgaacatcttggccgcatggagcggcgacgccagcccgtcgagcttgtccagcgacagccgtcgcgtcgggttcaacatcctgtcggggacgtccatgtcgtgcccgcacgtcgccggcgtggccgcgctgatcaaggcgagccacccggactggagcccagcacagatcaagtccgcgctgatgaccaccgcgtacgtgcacgacaacacgtaccggccgatgaaggacgcggcgaccggcaaggcgtcgacgccgttcgagcacggagcggggcacatacacccggtgcgagctctcacccctggcctggtctacgacattggccaggccgactacctggagttcctctgcacgcagcacatgacgccgatgcagctcaggaccttcaccaagaactccaacatgacatgcaggcacaccttcagttccgccagcgacctcaactatccggccatctcagtcgtcttcgccgaccagccatccaaggcgctgacggtgcgccgcactgtcacgaacgttggtcctccatcttcgacgtaccatgtcaaggtcaccaagttcaagggcgccgatgtcatcgtcgaaccgaacaccctgcacttcgtaagcacaaaccagaagcttagctataaggttacagtgacaaccaaggccgcccagaaggcaccggagttcggagccctgtcctggagcgacggcgtccacattgtcaggagccctgtcgtcctaacatggctgccaccacagtga</cdnaseq>

Protein Sequence

<aaseq>MDFCKARWKVPALCLVTVLLQASLSACAPTPKTYIVQMAASEMP SSFDFYHEWYASTVKSVSSSQLEDEEDDASTRIIYNYETAFHGFAAQLDEEEAELMAE ADGVLAVIPETVLQLHTTRSPDFLGIGPEVSNRIWSDSLADHDVVVGVLDTGIWPESP SFSDKGLGPVPAKWKGLCQTGRGFTTANCNRKIVGARIFYNGYEASSGPINETTELKS PRDQDGHGTHTAATAAGSPVQDANLYGYAGGVARGMAPRARVAAYKVCWAGGCFSSDI LAAVDRAVSDGVDVLSISLGGGASRYYLDSLSIASFGAMQMGVFVACSAGNAGPDPIS LTNLSPWITTVGASTMDRDFPATVTLGNGANITGVSLYKGLRNLSPQEQYPVVYLGGN SSMPDPRSLCLEGTLQPHDVSGKIVICDRGISPRVQKGQVVKEAGGIGMILANTAANG EELVADSHLLPAVAVGEAEGIAAKSYSKSAPKPTATLSFGGTKLGIRPSPVVAAFSSR GPNILTLEILKPDVVAPGVNILAAWSGDASPSSLSSDSRRVGFNILSGTSMSCPHVAG VAALIKASHPDWSPAQIKSALMTTAYVHDNTYRPMKDAATGKASTPFEHGAGHIHPVR ALTPGLVYDIGQADYLEFLCTQHMTPMQLRTFTKNSNMTCRHTFSSASDLNYPAISVV FADQPSKALTVRRTVTNVGPPSSTYHVKVTKFKGADVIVEPNTLHFVSTNQKLSYKVT VTTKAAQKAPEFGALSWSDGVHIVRSPVVLTWLPPQ</aaseq>

Gene Sequence

<dnaseqindica>168..2498#acgagcagagaccacagtccacactccacgcagctcactggaagcatgttaagctggagagtggagtgtacataagcagcagagcttgatctgcccccaaatccaagctttgctcccaaaagctcctttgcatctatctatcaaattattctccctttctcttctccatggatttttgcaaggcgagatggaaggttccggcgctgtgcctggtgactgttcttctccaagcaagcctctctgcttgcgcgccaactcccaagacttacatcgtgcagatggcggcgtctgagatgccgagctcgttcgatttttaccatgagtggtacgcttccacggtgaagtcggtgagctcttcgcagctggaagatgaagaggatgatgcttccacgaggattatctacaactacgagacggcattccatggcttcgcggctcagctcgacgaggaggaagccgagctgatggccgaggcggacggcgtgctggccgtgatcccggagacggtgttgcagctgcacaccaccaggagcccggacttcctcggcattggcccggaggtcagcaacaggatatggtccgacagcctcgccgaccacgacgtcgtcgtcggcgtgctcgacaccggcatatggccggagagccccagcttcagcgacaagggcctcggccccgtgccggccaagtggaaaggcctctgccagaccggccgcggcttcaccacggcgaactgcaaccgcaagatcgtcggggcgcgcatcttctacaacggctacgaggcctcgtcggggcccatcaacgagacgaccgagctcaagtccccgcgcgaccaggacgggcacggcacgcacaccgccgccaccgccgcgggctcgcccgtgcaggacgccaacctgtacggctacgccggcggcgtcgcccgtggcatggcgccccgcgcccgcgtcgcggcctacaaggtgtgctgggcgggagggtgcttcagctccgacatcctggcggccgtcgatcgcgccgtgtcggacggcgtcgacgtgctctccatctccctcgggggtggcgcctcccggtactacctcgacagcttgtccatagcgtcgttcggggccatgcagatgggcgtgttcgtcgcctgctcggccggcaacgccgggcctgacccgataagcctcaccaacctgtcgccgtggataaccacggtgggcgcgagcaccatggaccgtgacttcccggccacggtgacgctcggcaacggcgcgaacatcaccggcgtctcgctttacaaaggcctgcgaaatctgtcgccgcaggagcagtatccggtggtctacttgggcggcaattccagcatgccggacccccgttctctgtgcctcgaggggacgctgcagccgcacgacgtctccgggaagatagtgatctgtgaccgcggcatcagtcctcgggtgcagaagggtcaggttgtcaaggaagccggcggcatcggcatgatacttgccaacaccgcggcaaacggcgaggagctggtcgccgacagccacctgctgccggccgtggcagtcggcgaggcggaaggcattgccgccaagagctacagcaagagcgccccaaaaccgaccgcgacgctcagcttcggcggaaccaaactcggcatccggccgtcgccggtggtcgccgcgttctcgtcccggggaccaaacatcctgactctggagatcctcaagccggacgtcgtcgcgcccggcgtgaacatcttggccgcatggagcggcgacgccagcccgtcgagcttgtccagcgacagccgtcgcgtcgggttcaacatcctgtcggggacgtccatgtcgtgcccgcacgtcgccggcgtggccgcgctgatcaaggcgagccacccggactggagcccagcacagatcaagtccgcgctgatgaccaccgcgtacgtgcacgacaacacgtaccggccgatgaaggacgcggcgaccggcaaggcgtcgacgccgttcgagcacggagcggggcacatacacccggtgcgagctctcacccctggcctggtctacgacattggccaggccgactacctggagttcctctgcacgcagcacatgacgccgatgcagctcaggaccttcaccaagaactccaacatgacatgcaggcacaccttcagttccgccagcgacctcaactatccggccatctcagtcgtcttcgccgaccagccatccaaggcgctgacggtgcgccgcactgtcacgaacgttggtcctccatcttcgacgtaccatgtcaaggtcaccaagttcaagggcgccgatgtcatcgtcgaaccgaacaccctgcacttcgtaagcacaaaccagaagcttagctataaggttacagtgacaaccaaggccgcccagaaggcaccggagttcggagccctgtcctggagcgacggcgtccacattgtcaggagccctgtcgtcctaacatggctgccaccacagtgagcccctttggtgttgttgcattagacaaatcatgaagcagaaacatctgtgtcctggcttcagatatagcaagtctgatataggtcgcgtatcagcagcacagcacagttcacttagtgaagaaaagctgcactccaaaacaagctttattcctcactgtatccatgcttattccaattgttcagtagttggttgattgtttctacattacttcgtgtacaacacattggagcaaacagtagaatggaaacctcactagtaacac</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0573300, RefSeq:Os04g0573300

Retrieved from "https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os04g0573300&oldid=16885"