Os04g0577500

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Revision as of 11:24, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os04g0577500| Description = TatD-related deoxyribonuclease family protein| Version = NM_001060167.1 GI:115460063 GeneID:4336745| Length = 4065 b...")
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Gene Name

Os04g0577500

Description

TatD-related deoxyribonuclease family protein

Version

NM_001060167.1 GI:115460063 GeneID:4336745

Length

4065 bp

Definition

Oryza sativa Japonica Group Os04g0577500, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:29514077..29518141

Sequence Coding Region

29514407..29514535,29515026..29515214,29515292..29515445,29515713..29515813,29516294..29516344
,29517618..29517698,29517774..29517848,29517930..29518085

Expression

GEO Profiles:Os04g0577500

Genome Context

<gbrowseImage1> name=NC_008397:29514077..29518141 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:29514077..29518141 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcccaggcaccagcgcgcgccgcttccgtcgtgcggctcttcgacgcgcactgccacctgcaggacccgcgtgtgctgtccgtcgccccttccctcatacgcgccgccaccgccgccggcgtcgcgcgcttcgccgtcaacggcacttccgagaaagactggcacctggtgaagcagatggccgaggagtacccgtccgtcgtcccctgcttcggcctccacccatggtgggtaccggagagatcgccggattggatggattcgctccggcggttcttcgctgaaacaccagaggcggctgttggggagattggtctggacaaaggttcacatggaaaaaccattgactttggagaacaggttgaagttttccagcagcaacttgaacttgctaaggagttgaacaagcctgtttctgttcattgtgtgcgcgcctttggtgatcttctggagatactaaagagaactggacctttcccagctggtgtgttgctgcattcgtatctaggatctgcagaaatggtgtccagccttgaaattttaggctgttacttttcgttgtccggcttccttacaggcatgaaatccacgaaggcaaagaaaatgctaaaatcaatgcccttagacagaattctgctagagaccgacgcaccggatgcattaccgaaattggatgatatttctctattagcagtacctgtggatagctcaagtgcagataatggagaaagtaaaaaagattctaattcacgggcatctaccacttcaaatgagtctttgaaccatccatctaatatccacattgttatgaagtatgtcgcctcactgcttgaaatatcagaaatagaacttgctgaagtgacatacaagaatgcgaccaagctgttctcttatcatggatccaaagttcacaatgaagtggaagctgtgtga</cdnaseq>

Protein Sequence

<aaseq>MAQAPARAASVVRLFDAHCHLQDPRVLSVAPSLIRAATAAGVAR FAVNGTSEKDWHLVKQMAEEYPSVVPCFGLHPWWVPERSPDWMDSLRRFFAETPEAAV GEIGLDKGSHGKTIDFGEQVEVFQQQLELAKELNKPVSVHCVRAFGDLLEILKRTGPF PAGVLLHSYLGSAEMVSSLEILGCYFSLSGFLTGMKSTKAKKMLKSMPLDRILLETDA PDALPKLDDISLLAVPVDSSSADNGESKKDSNSRASTTSNESLNHPSNIHIVMKYVAS LLEISEIELAEVTYKNATKLFSYHGSKVHNEVEAV</aaseq>

Gene Sequence

<dnaseqindica>3607..3735#2928..3116#2697..2850#2329..2429#1798..1848#444..524#294..368#57..212#accgctagaagcgccgttgagcacttccgcttccggccaccgcggggtcgccggatatggcccaggcaccagcgcgcgccgcttccgtcgtgcggctcttcgacgcgcactgccacctgcaggacccgcgtgtgctgtccgtcgccccttccctcatacgcgccgccaccgccgccggcgtcgcgcgcttcgccgtcaacggcacttccgaggtatgctcccgcgcctacctcgtgcgagaacacggggggaatctctcctcgctgactcttgtctactggataagcgcgcagaaagactggcacctggtgaagcagatggccgaggagtacccgtccgtcgtcccctgcttcggcctccacccatggcaagattccctggatgcctctcccgctgccgtgacctctatgctctctggttcttaattccgtgaatttgataggtgggtaccggagagatcgccggattggatggattcgctccggcggttcttcgctgaaacaccagaggcggctgttggggaggtgtactttattcggcaattttttacgcttttaaattgtacattgaattatccagcaatagaactttggtaataatctgtagttcctttcctcaaagcacaaactaaggcctacctagtgcaagtaccacttctctaatattagtattaattctctacaagtattttattgttcatcttgtttcatcatcactaggatacgttgttcttctggacatcctaatcaactgaatcatgtcctgctgcccctgtgtaatgtaaagaaggctgtttctgaattgagtgaaatatagagtaaattgcgtctacggtacataaacttggtaggttggtgcaatctagtgcaaaaacttgagaaatgagcatataggtgcaacaacttggctagtgcgtgcattttggttaaaagatctatattccacaccatactttttatgccatataaaaaaaccgccactcagaccatctcgaaaaggatctacatgtattatatattgctttcaattgattagttataataataaaataatccgtcaatttaaaaccgaaaaatatatgattatcaaaagtaagtgcatgactaatcaacatattcattatctcgggttatgaacatggtgaaacactaaaatgaatccatgagccaacgatgtagcaaagcttataataccaggattaatcaaaggtatgtattagtgttttggcctaaaatgcacgtgattgtcaagttcatgtactagtctactcaattttcaagttcttggactaaatcgcacccacctaccaagttcttgtaccatagacgcaatttgagcttcttctcttttccttttgttgttcataggaggccccgatgagcgggtgaattctgtctgcttgtaaaatatattaacttgttctgctcttggcatgtacaatttgtcttatagtatggctgtgtttagttcccttcaaacttccaatttttccattacatcaaatgtttggacatatgcatggagcattaaatgtggacgaaaaaaaaccaattgcacagtttgcatgtaaattgcgactcttttgagcctaattacgccatgattttacaatgtggtgctaccgtaaacatttgctaatgacggattaattaggcttaatagattcgtctcgcagtttacaggcggaatctgtaatttgttttgttattagtctacgtttaatacttcaaatgtgtgcccgtatacttcaaaaaaaatgaaatggaactaaacacggcctatgttactgtaatgcagattggtctggacaaaggttcacatggaaaaaccattgactttggagaacaggtttgtaattagcatttttccttcttcacttcttgttttatatgatctatcaagacattcagttatctgatggatataacgattttatctattaatgcccctgttttagttgggcgcccatttatgcccataagactatttttttcttaaaagaaaggccaagagctttgcctattacattaaaggaggatagaagtttaaaaggagcaaggaagaagggagtaacacaaaagcgataaaactcatgcaagctaagctagaaaatctctctcctgttgctcaatatcctcttcgatcttgtaaatgatttgttgtggctgaagacactgatcttgaaaagctcacctactctgctccttccaaatgttccaacatgtgtaaatcactaggccatataacctatgcctcaagtccttttgcatcatgagcaagctttatgccaccaataagactatcagaagctaaaaaatatcactgcaggttgaagttttccagcagcaacttgaacttgctaaggagttgaacaagcctgtttctgttcattgtgtgcgcgcctttggtgatcttctggagatactaaagtaagacatggagatttgttctcaaagtatgtttaagttgaaattcttagtagattatttatagtatggtatccaccagttcctaacatagttcggatacatttattgactagataaccaaaaccttgagaatcctgcctgtcttagacaacaaatgccaatctgaagtatacggtccagattacctaactgctagcacaaatagcatgtaacttctgattgtttttctccaataagtattgattcctacatttttgttgcttgcaggagaactggacctttcccagctggtgtgttgctgcattcgtatctaggatctgcagaaatggtgtccagccttgaaattttaggctgttacttttcgttgtccggcttccttacaggcatgaaatccacgaaggcaaagaaaatgctaaaatcagtaagtaattttattctgtacttttagatgccatctcagagggatttactaattgtctacatttgtacttattttagatgcccttagacagaattctgctagagaccgacgcaccggatgcattaccgaaattggatgatatttctctattagcagtacctgtggatagctcaagtgcagataatggagaaagtaaaaaagattctaattcacgggcatctaccacttcaaatgagtctttgaaccatccatctaatatccacattgtaagatttttgctagggtgccctttgctgactttttttcgttaaagaatcttcatggtagttattacaagcctttctgctggaccacttcttttacataagttccttgatagctccactgttttatctttttttgtcttggctgctatgctttataagtcctccacaggactaaagaggtttatcataccatcaactcatacaatgttttctatgcttgcgaacaatttcaacaacactgtacactgttcacacttcacaattcctccgtgcaatctgttttggatgctagtatctgaaaaacacagttgcatattactgtactgctgctgttttgttttaagccacttatattggtccactgccagctcaccactccttgcatgttccatctgtccgaaaaggtcctcttgagttaacattcttatacatacagcagagtaaatcatggactgacaaaagcttaataaactgtggttctttgtctcaggttatgaagtatgtcgcctcactgcttgaaatatcagaaatagaacttgctgaagtgacatacaagaatgcgaccaagctgttctcttatcatggatccaaagttcacaatgaagtggaagctgtgtgattgggtgggcatccaatttgaaccatgttgttcctctgaaattatgaaccctggtgcgtgcattctgcctctgaacactacccgttatattgtactccctccttttttttttgtttgacgttggttagctcaaaattgaactaaccaacattaaacatttggggaaggcggtagtatattagtaattgcaacataaaagaaagtggttatttcgttaaggaggcactatcttggcaatgttgtctaagtgtgattttacatttcttgagaggagaacagcaggtcagcaaggtatctaaataactattaaatgcaccacgactggcaacc</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0577500, RefSeq:Os04g0577500