Os04g0592400

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Revision as of 11:25, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os04g0592400| Description = contains InterPro domain(s): IPR010989| Version = NM_001060249.1 GI:115460227 GeneID:4336830| Length = 2831 bp| Def...")
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Gene Name

Os04g0592400

Description

contains InterPro domain(s): IPR010989

Version

NM_001060249.1 GI:115460227 GeneID:4336830

Length

2831 bp

Definition

Oryza sativa Japonica Group Os04g0592400, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:30363665..30366495

Sequence Coding Region

30363803..30363822,30363984..30364176,30364278..30366353

Expression

GEO Profiles:Os04g0592400

Genome Context

<gbrowseImage1> name=NC_008397:30363665..30366495 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:30363665..30366495 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgcagggctccaagaccaaatctggccatgccgaggcgaagagcaacggcaaggcggaggcgaagggcacgccgccgacgcccaagagcgccaagattgcgaggaagccggccgtgcccaaggcgccgccgcgcccctccgccgacaagtcccagtcccccggctcggccgaccgcaagaagagcgcctcccggatcaccacccctccagagaagcaagggaaggcgacgaagcccgctcaggagtcggtggccgcgaagccgtcgcctcaagagccggtggccgtgaagccgtcgtcccaggagcaggagcagcaggcgctgctggctgcagttcagcaggagctcgtgaaggccaaggaggagttggtggagaaggagaaggagagggggaaagtcctggatgaactggagcgtgccaagagggcggctgatgaggccaatgcgaagctccaggaggcgctcgctgcgcagagcaaggcggcggaggagtcggcggcggagcagtccggcgatgccgaagcggagcaggcgagcgcgagcatggaggatgagctgcggacgaagctggcgagcatgcagagccagcaggaggctgacatggccgcactgcgttcgacggtggagcagcttgagcaggccaggtatgagctagcggatgcaatcgatgccaagaacgcggcgcttacccaggcagatgatgccatgagggcttcagatgagaatgccgagaagatcaagctcctcgatgcggaggtggcgcatctcaaagggctgcttgattccgaggtagggagctcgtcaaaaggtgctgtggagcacattaggaagcttgaagaagagaactctggattgaagcttgagcttgagaaagcaaatgtcgctgagcagagggcagttgaattggaaggtgtggttgaacagcttgaagttgaaatcgctgatgttaagaaggcgcgcgcgaggtcagaggagttacttggcaaatggaagacaaaagcactggaattggaggtcaggttggaggaagctgatcagtctaacattctcaagggcgagtccttagaatcagcaatgaaagaattggatgcaaaaatgactctgctccaagaaaaagaatctgaaatcgaagcacttcaggataaggtcaggtctttggaggatgaagtagccaagcagaaagaagattttcatactgctgataaggaagctgatgaattaaggttggagatagaagaccttaggttgaagctcgaagcggcggaagaagaccttaacaatgacaagattgccagttcagaaatggaaaccctgattgaacagaagaacatgctagccaaggaacttgaagctagcaaagctgaagttgagaagattaagaaggccatggagggtcaagcctctgctttgcacgaaatgtcagctcaactgagagtggcgcaggagaagtacctagataaacaagaggagattgatcgtgctcgtgcacaggtagaggagctcaatgtaagtctgcagaatacaaaggagagctatgaggtaatgcttgacgaagcaaactatgaaaaagtttgtctcaagaagtcagttgagagaatggaagcagaaaccaagagtgcgtctgaggaatggcagtccaaagagctaagttttgttaactcaattaaaaaatcagaagaagaaatcatcaacgccagagctcagatggacaagaccttggaggctgtaaaaggcaaagaaagtgaaaatgctgagttacaggagaagttgaagcatcttgaagctcagctaatggaagctaacaaaacatgcgaggaagccaaggccgagaccttccagtggaaggaaaagctactagacaaagaaaatgagttgcagaacataaaacaagagaacgatgatttgcaagcaaaggaacttgttgcttctgagaagataaaggagctctccgtgcttgcaaatgcaaaagatggagctacaaatggtagtcacaaggaagaaagtaatgtcaagggggacagcgaggatgatgaaccggtaatggtagttgcaaagatgtgggagaacagcaaggttactgatgatgcctcatctaaggagaagggaaacgatggtgaatcagaagttgatttagagtccaacacgggagattccattgttgatggcaatggtttgcactccacgacggcgagcaatggcaacgcatcaccgcccaagcagcagccgcaaaagaagaagcccttgctgaagaaatttggtggtctgctgaagaagaaaacccaaccttag</cdnaseq>

Protein Sequence

<aaseq>MQGSKTKSGHAEAKSNGKAEAKGTPPTPKSAKIARKPAVPKAPP RPSADKSQSPGSADRKKSASRITTPPEKQGKATKPAQESVAAKPSPQEPVAVKPSSQE QEQQALLAAVQQELVKAKEELVEKEKERGKVLDELERAKRAADEANAKLQEALAAQSK AAEESAAEQSGDAEAEQASASMEDELRTKLASMQSQQEADMAALRSTVEQLEQARYEL ADAIDAKNAALTQADDAMRASDENAEKIKLLDAEVAHLKGLLDSEVGSSSKGAVEHIR KLEEENSGLKLELEKANVAEQRAVELEGVVEQLEVEIADVKKARARSEELLGKWKTKA LELEVRLEEADQSNILKGESLESAMKELDAKMTLLQEKESEIEALQDKVRSLEDEVAK QKEDFHTADKEADELRLEIEDLRLKLEAAEEDLNNDKIASSEMETLIEQKNMLAKELE ASKAEVEKIKKAMEGQASALHEMSAQLRVAQEKYLDKQEEIDRARAQVEELNVSLQNT KESYEVMLDEANYEKVCLKKSVERMEAETKSASEEWQSKELSFVNSIKKSEEEIINAR AQMDKTLEAVKGKESENAELQEKLKHLEAQLMEANKTCEEAKAETFQWKEKLLDKENE LQNIKQENDDLQAKELVASEKIKELSVLANAKDGATNGSHKEESNVKGDSEDDEPVMV VAKMWENSKVTDDASSKEKGNDGESEVDLESNTGDSIVDGNGLHSTTASNGNASPPKQ QPQKKKPLLKKFGGLLKKKTQP</aaseq>

Gene Sequence

<dnaseqindica>139..158#320..512#614..2689#agtggcacagcagagcggccacaaccgctcacctcaccactccttcctccaatttcgcattcaaggcgactcctttggttagagtagtagaggtgcacgaaccaagaaccagaagcagaagcggaagcagaggcagcaatgcagggctccaagaccaagtaagcattggctaaccctcctgcgcactctgctgcgagttcttgatcggtgcagcaagcttctccggcttgctggatcttgctttggtgtgggcaagatagatctggccttgtggttctttgatctgatggcggcggttcggtttttcttggcgctgcagatctggccatgccgaggcgaagagcaacggcaaggcggaggcgaagggcacgccgccgacgcccaagagcgccaagattgcgaggaagccggccgtgcccaaggcgccgccgcgcccctccgccgacaagtcccagtcccccggctcggccgaccgcaagaagagcgcctcccggatcaccacccctccagaggtatgccaattcatgctcctcctcctctcgccggtgatgctgaactgaaaactgcttgctttttggctggaatctgagtgttttttttttatggtttgtagaagcaagggaaggcgacgaagcccgctcaggagtcggtggccgcgaagccgtcgcctcaagagccggtggccgtgaagccgtcgtcccaggagcaggagcagcaggcgctgctggctgcagttcagcaggagctcgtgaaggccaaggaggagttggtggagaaggagaaggagagggggaaagtcctggatgaactggagcgtgccaagagggcggctgatgaggccaatgcgaagctccaggaggcgctcgctgcgcagagcaaggcggcggaggagtcggcggcggagcagtccggcgatgccgaagcggagcaggcgagcgcgagcatggaggatgagctgcggacgaagctggcgagcatgcagagccagcaggaggctgacatggccgcactgcgttcgacggtggagcagcttgagcaggccaggtatgagctagcggatgcaatcgatgccaagaacgcggcgcttacccaggcagatgatgccatgagggcttcagatgagaatgccgagaagatcaagctcctcgatgcggaggtggcgcatctcaaagggctgcttgattccgaggtagggagctcgtcaaaaggtgctgtggagcacattaggaagcttgaagaagagaactctggattgaagcttgagcttgagaaagcaaatgtcgctgagcagagggcagttgaattggaaggtgtggttgaacagcttgaagttgaaatcgctgatgttaagaaggcgcgcgcgaggtcagaggagttacttggcaaatggaagacaaaagcactggaattggaggtcaggttggaggaagctgatcagtctaacattctcaagggcgagtccttagaatcagcaatgaaagaattggatgcaaaaatgactctgctccaagaaaaagaatctgaaatcgaagcacttcaggataaggtcaggtctttggaggatgaagtagccaagcagaaagaagattttcatactgctgataaggaagctgatgaattaaggttggagatagaagaccttaggttgaagctcgaagcggcggaagaagaccttaacaatgacaagattgccagttcagaaatggaaaccctgattgaacagaagaacatgctagccaaggaacttgaagctagcaaagctgaagttgagaagattaagaaggccatggagggtcaagcctctgctttgcacgaaatgtcagctcaactgagagtggcgcaggagaagtacctagataaacaagaggagattgatcgtgctcgtgcacaggtagaggagctcaatgtaagtctgcagaatacaaaggagagctatgaggtaatgcttgacgaagcaaactatgaaaaagtttgtctcaagaagtcagttgagagaatggaagcagaaaccaagagtgcgtctgaggaatggcagtccaaagagctaagttttgttaactcaattaaaaaatcagaagaagaaatcatcaacgccagagctcagatggacaagaccttggaggctgtaaaaggcaaagaaagtgaaaatgctgagttacaggagaagttgaagcatcttgaagctcagctaatggaagctaacaaaacatgcgaggaagccaaggccgagaccttccagtggaaggaaaagctactagacaaagaaaatgagttgcagaacataaaacaagagaacgatgatttgcaagcaaaggaacttgttgcttctgagaagataaaggagctctccgtgcttgcaaatgcaaaagatggagctacaaatggtagtcacaaggaagaaagtaatgtcaagggggacagcgaggatgatgaaccggtaatggtagttgcaaagatgtgggagaacagcaaggttactgatgatgcctcatctaaggagaagggaaacgatggtgaatcagaagttgatttagagtccaacacgggagattccattgttgatggcaatggtttgcactccacgacggcgagcaatggcaacgcatcaccgcccaagcagcagccgcaaaagaagaagcccttgctgaagaaatttggtggtctgctgaagaagaaaacccaaccttagcataaattctgatgacatttctttgttttgtgctatatggcatctctttctttgactggtcatctagcttctgggtattgcctcatcatggtaaaaaaaaatgttgggtgttttaagagaatacaaatggtcgattgtattt</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0592400, RefSeq:Os04g0592400