Os04g0602400

From RiceWiki
Revision as of 11:26, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os04g0602400| Description = Similar to Maltose excess protein 1, chloroplast precursor (Root cap protein 1)| Version = NM_001060307.1 GI:11546034...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os04g0602400

Description

Similar to Maltose excess protein 1, chloroplast precursor (Root cap protein 1)

Version

NM_001060307.1 GI:115460343 GeneID:4336889

Length

4973 bp

Definition

Oryza sativa Japonica Group Os04g0602400, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:30795475..30800447

Sequence Coding Region

30795862..30795944,30796145..30796206,30796310..30796372,30798013..30798131,30798212..30798313
,30799104..30799193,30799367..30799657,30799734..30799889,30799982..30800215

Expression

GEO Profiles:Os04g0602400

Genome Context

<gbrowseImage1> name=NC_008397:30795475..30800447 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:30795475..30800447 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgtcgtcgtcggtgtcctccgtgcgcctcccgctgcgggcggctcctcccctctacggccgccgcgagtggagggccgatggggcccgggcgccgtctcccgcgctcgtcgccgtgaagccgctgtcgtgcagggcgcccgcgtcgtaccgctccgcgctgctcctccaccgccgccgccggtacgcgctgcccccggttgccgccaccgccacctccaagcccgtcctcaaggacccgaagaagtatcaggaatgggactctctgacggccaagttcgccggcgccgccaatgtccccttcctcctcctgcagcttccccagatcatcctcaacgcccgtaacctcctcgccggcaacaaaaccgcgctcttcgccgtcccatggctcgggatgctcaccgggctgctcgggaacctgtcgctgctgtcctatttcgctaagaagaaggagacgggggcggtcatcgtgcagaccttgggcgtcatctccacctatgtagtcattgcccagctcgccatggcagagtccatgccattgccacagttcgtggccacttcagccgttgtggccgctgggctgctcctgaacttcctcaattactttgggtggctcccgggaacactctggctgctgtgggaggatttcatcacaataggtggccttgcagtgcttcctcaggttatgtggtcaacatttgtccccttcatccccaatagcttactgcctggcataatctctggttctttggctgccacagctgtcgtaatggcaagaatgggaaagctttctaagggagggattaactttgttggatcattatctggctggacggccacacttctcttcatgtggatgccagttgcgcagatgtggacaaattacctcaacccaagtaacatcaaagggttgtcagctttcactatgttgcttgcaatgattggaaatggacttatgattcctcgtgctgtatttatcagagatctcatgtggttcactggttctgcctgggcatctttcctacagggttggggtaacttggcctgcatgtactgcttcgatagcatcagcagagaatctttcttggcaacaacatttggacttcttctgtggctaggatttactctctggagagataccattgcccatggcaacagctcacccgtgacttctttgaaggaacttcttttcggaaagtga</cdnaseq>

Protein Sequence

<aaseq>MSSSVSSVRLPLRAAPPLYGRREWRADGARAPSPALVAVKPLSC RAPASYRSALLLHRRRRYALPPVAATATSKPVLKDPKKYQEWDSLTAKFAGAANVPFL LLQLPQIILNARNLLAGNKTALFAVPWLGMLTGLLGNLSLLSYFAKKKETGAVIVQTL GVISTYVVIAQLAMAESMPLPQFVATSAVVAAGLLLNFLNYFGWLPGTLWLLWEDFIT IGGLAVLPQVMWSTFVPFIPNSLLPGIISGSLAATAVVMARMGKLSKGGINFVGSLSG WTATLLFMWMPVAQMWTNYLNPSNIKGLSAFTMLLAMIGNGLMIPRAVFIRDLMWFTG SAWASFLQGWGNLACMYCFDSISRESFLATTFGLLLWLGFTLWRDTIAHGNSSPVTSL KELLFGK</aaseq>

Gene Sequence

<dnaseqindica>4504..4586#4242..4303#4076..4138#2317..2435#2135..2236#1255..1344#791..1081#559..714#233..466#gcgggggtcgcgcgggtccatcggatcgggagcgcgcggcgaggcaggcggggtcgccaccacctgtcgcgacgcgaccgcggggggcgcgcgtctccttccttcctcccctcacctcacgctgcctccctcccatccccttcgccctcctgtccgcctcgctccccgctccctctcgctctcgctctcgccttctcgccaccgatccatccgcccccgtggcgcgccgcccatgtcgtcgtcggtgtcctccgtgcgcctcccgctgcgggcggctcctcccctctacggccgccgcgagtggagggccgatggggcccgggcgccgtctcccgcgctcgtcgccgtgaagccgctgtcgtgcagggcgcccgcgtcgtaccgctccgcgctgctcctccaccgccgccgccggtacgcgctgcccccggttgccgccaccgccacctccaagcccgtcctcaaggtacgcgcgcgtgtgctcgtcctggctggcgtctcttcgctctcggcattggcggggcaaatcgtgagtagtgtgggttggcacgcgcgtaggacccgaagaagtatcaggaatgggactctctgacggccaagttcgccggcgccgccaatgtccccttcctcctcctgcagcttccccagatcatcctcaacgcccgtaacctcctcgccggcaacaaaaccgcgctcttcgccgtcccatggctcgtacgtgtcacctcaccttcaatcccctccacattttcccccatttgttgatctgtttgttgattttgtgcctcaggggatgctcaccgggctgctcgggaacctgtcgctgctgtcctatttcgctaagaagaaggagacgggggcggtcatcgtgcagaccttgggcgtcatctccacctatgtagtcattgcccagctcgccatggcagagtccatgccattgccacagttcgtggccacttcagccgttgtggccgctgggctgctcctgaacttcctcaattactttgggtggctcccgggaacactctggctgctgtgggaggatttcatcacaataggtggccttgcagtgcttcctcaggtgagaatggccgtcctgctgtgtcacgttacagattcagcttctgcttctgctgctgctgctgctgctatgcgtaacagtgttaatttttaagagcattttcgaactgtaaaagccactccaattttaagtgtggctctgcctccctctttgattatgaaatgattatgcaggttatgtggtcaacatttgtccccttcatccccaatagcttactgcctggcataatctctggttctttggctgccacagctgtcgtaatggtacgagacactcttaccttaaggattgttttgatcaaagcttttttttaacgaaatcttgttcaaagtttcatgtgtgtttgctctactaccatctccatgccttgagaaagaaaaatagagttttaagtaatttagctgtccaaggtaaatttggggaggaaataactatagaataagccctccacttcatctccacattttctttaggtaattgttgaaaaaacttgcacatataacaccgaggtggattggatatttactattaggtataaaaggtgtgagtatataaggaaatctttgtgtaaaagtggttgcataaccaatagttatttagagaaaaggccgacagccctgcttttttatagcaagcaatgtggttgcatgaccaatagtgaagttcagttccatattaggatgcaatttacctaaagttttttttagtatactatctgttagctttatgtctattgttagcagggcactaatatcgcttccatgatttatgtagtacttgttttttttttaatttgccttttatttgtgcaaatctaaagatgccaattgcttcataaggaaaaactttggtcaataagattggtagagcaccataacactctacctagaagaatgcaagtgtatattttgctctgcatatgtctgtatttctcgatgattaacgaaaattaagactaagtatgttgtactctcatgatgtaatgcccctatttaaccatatttgctccaatcttgtgttatctcttgatttcttttggtacactaaattcaggcaagaatgggaaagctttctaagggagggattaactttgttggatcattatctggctggacggccacacttctcttcatgtggatgccagttgcgcagatggtattcaaactttcacacttgtagcacttagaatcacctaacgccaagacactaaaaatatgtttcgtgggtttgtgcagtggacaaattacctcaacccaagtaacatcaaagggttgtcagctttcactatgttgcttgcaatgattggaaatggacttatgattcctcgtgctgtatttatcagagatctcatgtggtatgctgtttatcttcaaccttggatactccttttttaaaaactagtatggtggcccgcgcagattgcgcggctagcatcattatattttctctcatataatagcatatatgttttctcaatgtattattcaaatatattaaaatgacaatacaattttaaattttgtactaactttacgaaactactaatgtgtaatattcatattgtattttatatacgtgttagttattaattatttttaatatcaaattttagttatttataaattatattcctatatggactctagactcgtcttttaatatttcttttttttattctgaattttcgttatctgtaaattgtatttctatatagactctaggctcttcttccaatattatttatttttaattctgaatttttattatttctaatgtatttctatgtggactctaaacttatctttcaatattctttaatttttaatttcgaatttcagttacttctaaattgtattcctatattgactttagactcttgttcccatgtttttttaatttcgaattttagttatttgtaaattgtatttttatacgaactctaaactctacttttaattttattatgtttattccaaattttagttagttttagattcctatatggactctatactctacttctaatattccttattttcaattccgaatttctattatttcttaattgtattcctatatgtactctatactctacttctaatattcgttatttttaattctgaatttctattatttccttaattgtatttctatatggactctagtctcctcttccaatattacttattttttaattccgaatttcaactatttctaaattgtatttctatatgaactatgttttctttttctccatttaatatgagaatttctaggccgtgagagcgaacatggaggctcctttttctactcctttaataagttaatagattcatgcactgctcttgggaaaagtatgaaataaaatcaatttctattgtaaaaaaatcacatggaacctgctttctatttgatcaacaaatataatcaagatgttcctaatcacatccttaccggtccaagagttgttgcccggtgaagagacttacagcccatagttttatcacatatgggattgttgagcctgctttatgacattgtatctgaaccaggagctcttagtgaatgaaacactagtaaatatacaaatttctacttgttgagatgaagtctgtaggaccttctaacttatataggaaacttctgctgtacatgagatgaagtcatagggcaagaccaataatggctaaccaggcaatcaagtgttttccatgtacaaagctttgtaaaaatcctcccacagtgtcctgttcattaaaatcttcagagtgcatcacacatgataacttggatgtttatttcctgaaactgggattggaaaaactatcaacaattacattcataagttcgagtgcgatctcattttatgataaactatgtatttctttctgatgttctcttgctggtcacccttgttccttcttttttttttctttttctgttgtactgcattcttacatggcccttgatcattgataccttcgatgaatttaggttcactggttctgcctgggcatctttcctacagggttggggtaacttggcctgcatgtactggtatgtttttcacagctatgacagacctgatttaccatatgagttttttgactgtaactccaacaagaatgtctaacccctgaactttatattctgctttcagcttcgatagcatcagcagagaatctttcttggcaacaacatttggacttcttctgtggctaggtttcctttcttctcaactcaagtttatttcttcataaagaaaagattcagtcaaaatccaaatatctccacctcaaacatttcagcatttctttgacgagcaatcgtagttaaatgcacaactgaattgtttgatgagctactaatctgcagggttggacttctaatcatatgcacatttgcttttgttgttttcccaggatttactctctggagagataccattgcccatggcaacagctcacccgtgacttctttgaaggaacttcttttcggaaagtgaatagaactccattatgtccatattcagcagcaaactgctgccaggcaggaagctctcctacaataattaatggtgaccggcaagaacctgttcgacattggcattattgaggtgaagcactctggtcgacaacctattgtcgtggtgaaactggaacctcccagcttgctgcttgcagaaagtggcatgtgctcctacagaaattaccaggtggccagcttgtgcatctggcagagaagggtacagtgtgtagcttttcttcttttttttttttgtaagaaagaactttatgtttctcctcttgaataagactgtcaggtcatgctggtatgggaaaatgcaaaccactggccattgggtcattggtgatgtccagcagcttcagcc</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0602400, RefSeq:Os04g0602400