Os04g0612600

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Revision as of 11:27, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os04g0612600| Description = Similar to Coatomer-like protein, epsilon subunit| Version = NM_001060382.1 GI:115460493 GeneID:4336967| Length = 48...")
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Gene Name

Os04g0612600

Description

Similar to Coatomer-like protein, epsilon subunit

Version

NM_001060382.1 GI:115460493 GeneID:4336967

Length

4822 bp

Definition

Oryza sativa Japonica Group Os04g0612600, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:31462583..31467404

Sequence Coding Region

31462851..31462944,31464586..31464665,31464816..31464971,31465099..31465234,31465813..31465964
,31466925..31467008,31467113..31467274

Expression

GEO Profiles:Os04g0612600

Genome Context

<gbrowseImage1> name=NC_008397:31462583..31467404 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:31462583..31467404 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcgtccccggacctcctcttcaacctgcgcaacctcttctacctcggcgcctaccaggccgccatcaacaacagcgacgtcccgggcctcgacgccgacgccgccgccgagcgcgacgccatcgtcttccgctcctacgtcgcgctcggctcctaccagttggtgatcagcgagatcgactcgtccgcggcgacgtcgctgcaggccgtgaagctgctcgcgctgtacctctccggagacaaggaaagtgcgattgtcagtctgaaggaatggttgagtgattcggcggttggaagcaatcctgttctacgattgattgctggaattatatttatgcatgagcaagactacactgaagctctcaagcacacacactctggtggaactctggacctgcatgcattgaatgtccagatcttcattaagatgcaccgttcagactatgccgagaagcaattaaagatcatgcaacagattgatgaggaccatacactgacacaacttgcaaacgcatggctggacattgctgttggtggctctaagatccgtgaagcttacctcatattccaagactttgctgaaaaatacccgatgacaggaatggttctaaatggcaaggcagtttgctgtatgcacatggggagctttgatgaggctgagactcttttactcgaagcattgaacaaggatgcaaaagatcctgaaactcttgctaatcttattgtgtgtaatctccaccttggcaaaccgtcatcaagatacctcagccagctgaaactatcacaccccgatcatgtgctagtaaagcgtgccgtatcagcagaagataacttcgagagagctctccaagccgtcgcttga</cdnaseq>

Protein Sequence

<aaseq>MASPDLLFNLRNLFYLGAYQAAINNSDVPGLDADAAAERDAIVF RSYVALGSYQLVISEIDSSAATSLQAVKLLALYLSGDKESAIVSLKEWLSDSAVGSNP VLRLIAGIIFMHEQDYTEALKHTHSGGTLDLHALNVQIFIKMHRSDYAEKQLKIMQQI DEDHTLTQLANAWLDIAVGGSKIREAYLIFQDFAEKYPMTGMVLNGKAVCCMHMGSFD EAETLLLEALNKDAKDPETLANLIVCNLHLGKPSSRYLSQLKLSHPDHVLVKRAVSAE DNFERALQAVA</aaseq>

Gene Sequence

<dnaseqindica>4461..4554#2740..2819#2434..2589#2171..2306#1441..1592#397..480#131..292#agagaccaaacgggccaaggagagaggagcagcagcagcgccaccgctcgcgagatctcctactcctcgtcgccgacgagccgcctcctcctcgtcgtcgccggcggcagagcaccggagcagccaccccatggcgtccccggacctcctcttcaacctgcgcaacctcttctacctcggcgcctaccaggccgccatcaacaacagcgacgtcccgggcctcgacgccgacgccgccgccgagcgcgacgccatcgtcttccgctcctacgtcgcgctcggctcctaccaggtgagctcagctcccttcccttccccctcggtcgctcgctcgctctacaacgggttggcggctctgatcggtgcgtgtcccctccccccatgtggctgttgcagttggtgatcagcgagatcgactcgtccgcggcgacgtcgctgcaggccgtgaagctgctcgcgctgtacctctccggagacaaggttagcacgctggatctgatcccatcgcctctgtaacgtgatgtctgagtctggatctggtgtgctttgttgtgatcgaagggctagatctatattgagttatgtgatctggagttagatctagtggatcgtatgcattgccagaggctcagggcttgattagttcgttgatacttgatcattgatttcctatttttcatttcaattggatgaatagactctgatggtgttcagaggctgaagctgttaagttcttcagctcaattgcgcaatgcatattaggacctttcgtttcaaacttcagttaccataggttgaaaccacagttcctttaaagtttaaagtaaaaaaaaaagagcatagacacacttgcatacacaaagatatgccattagagctacttcctcctcactgttaaaacccaaaagaagaaaacaaaacggaaccagtataacgtaaacttgatctcagggtgttcagttcagataaattgggggaaaacatacatactgcctaccatgcatctaggagactaggactaccggcattcatcagtgataatgttggttggtagtctgctggggaatgtatggtcaacttggcaatcacaggcaattcagggataccacctcctcaaacatagatggatcattggtatatgttttccccaaattgctatgaggccccatgaactcaacttgtgtatgcatgttttcactttaaccctaccgcatacattatggtccaataatacgattgttttctggtgcatttcagagtttttatggtcttattttggttcatgtcatgcactttatgagtatttaaccagtagtccagtacagctaagcctagaaaaatagttttttgttttgtttttccatcatattgtcttctcttccctctggtttgtccatacactgaaatgctatgtattattcttttgtacaacttttgaaggaaagtgcgattgtcagtctgaaggaatggttgagtgattcggcggttggaagcaatcctgttctacgattgattgctggaattatatttatgcatgagcaagactacactgaagctctcaagcacacacactctggtggaactctggacctgtgagtttcatttgtcctctgaactttatatggttcatccttccaggtgtagatttatttttagaaaacataggtgcagaacaatagaaaattttgtttgtgaattttgatcaccttacaataatggtcaagtttattggtatccagtaagataagtcaaaaatcttgtttccgaaaaggtatgttcaaatgctcagtgttgtgcacgtttattatcactcggacattgtagttcaacgcacttttctttcttatatgctgctaagtgctaactatgcacatgcaaatgcacttatgtttatcttgttgaaaatgtgacgttttgagagttggtgaaaatgcattactgcatgatacatcttaaatgtgctttctggcttcatgatctttagcatggtaatattttctattgttcaacactggtaattgctgatctttgctgatttcgatttgatgttgctgatcatttagttaactgcaaaccttggtggtcagaatcttctgtttggtgcccccttcatttgtggaatactgtttgttgatgatcttgtttactatctgttgcttttcggttacaggcatgcattgaatgtccagatcttcattaagatgcaccgttcagactatgccgagaagcaattaaagatcatgcaacagattgatgaggaccatacactgacacaacttgcaaacgcatggctggacattgctgttgtaagtactttgacagtccaactttgtggagtaccgaaaattcagcattgcattgacaactgctggacaaatgtgcttattcaacatttaatctatcgagcttattaacaatcaagttatcgtgcagggtggctctaagatccgtgaagcttacctcatattccaagactttgctgaaaaatacccgatgacaggaatggttctaaatggcaaggcagtttgctgtatgcacatggggagctttgatgaggctgagactcttttactcgaagcattgaacaaggttagcttgatgacacacctcgcaactaagtttgaattaaagttggaaaaaaaaacttatgacatttaattttttttatttgactcacataaggatgccacgttggcatgttcgacacaaggtactcaaaccctgtttctactcttgtaggatgcaaaagatcctgaaactcttgctaatcttattgtgtgtaatctccaccttggcaaaccgtcatcaagatacctcaggtacaaactgtaacacaactgtacaattcaactgtttgctctgtttagttatttgcatggaaggcaacactgtcatgctgtgtcaagcaggatttcattatattattctatcttattatttggaagatgcatgccaaactagaagaattacatgttgataaatcatgtggcttgcatatacaaactattaaatatgtatccagagggacaattactaccaaacaatattttaaagttaaattgctagcaagataaggggacattcttaaaatttatatctccacctaattattttatgctacagagaccttcaagattagtagttaaaaagttaaaatgaaaatgcaataatgtatcagaaattaccagactgatgtaaatatctcatggcatggtgcaaaagctgctacccaagagaaatatttgtatttgtgtctcactattcagcctatttaaaacaatagccactcaataagtctagtcaaatcttggcaatcgtatgactggtccccgcagctattaaagaaacatgaactatagcattggttgatctgggatggtgaaagacgtgtcacgagtaggaccactggcaaaatgtcatgagatacttttcctctttgaactagtgaatcattttctcttatttcggcgattgaatttatatgttcaagttttgcgaaagacagctgttttttttttttggctatgatctgattttgtgtatccaagcaaatttgttatagccactagttcctgatctgatatatcaagacaaggtctgcccagcaacttgaaactgacattccaattggctgtgttcaacattccaattgttccacccagattccacagaacttctctactttgttttagatattactggtccagtatgaaaagaagcggcagggtatcagactatcatgttaggatcctctatgtatcttttgtcttcactagccaaatacccatgctttgcaacggatattgaaaatagcaaaattaagtccttgtggaaattaattattttttcattggttgaaagaagatctatcatcttaaagaacaaaagaaaaattacatgcttagaaaatttaagagctccagcctacaaattaagtaatcacccaaatcccaatgtcctcttctcctatagactacagcctacagcctaacaagtccaaagagcaagcagagcattgacatgtgttgtactatatcagggcccatgtgtcagtgatggtggtggtggtggtggtggtggcaggctcactagcaccactaatgtcttttaatagtatataataatatatataagtatagattcttcataaaatgcctatcagttagggacatccaaaactttactaaacgagtcagttagtaatagtttatgaaactgatgtgaactgttgagaagaatatcaacactgaagattgatgacttcacaattcattttttttaacatataattaccagtagaatggttcggtggaatttaccatctgtgcgggttaaaccgtagaacatctttcatgctttgcttcagtgtttggaaactatcccgtgattttcacaatgctttacttttagtgaacccaaaaatgcttaccacacttctaacctttcttttccatctgcagccagctgaaactatcacaccccgatcatgtgctagtaaagcgtgccgtatcagcagaagataacttcgagagagctctccaagccgtcgcttgaacacgtccgcggaaaacgcttgccagattgcagataacacaattgatcccccatgttccattttgagtgccttaacacagcgaaaattatgttgcatttgctcagtctgttttgctcaaatggtgatatactacccggccaatcttgtactctgaacccctgctgtataaacaaatataatgtagaatcttgaatggtgacgtttgtggtcagcatcgacattttgttatattctgctggattgttgttacatcgctcgattctttgt</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0612600, RefSeq:Os04g0612600