Os04g0640500

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Revision as of 11:31, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os04g0640500| Description = ABC-1 domain containing protein| Version = NM_001060571.1 GI:115460871 GeneID:4337164| Length = 7230 bp| Definition...")
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Gene Name

Os04g0640500

Description

ABC-1 domain containing protein

Version

NM_001060571.1 GI:115460871 GeneID:4337164

Length

7230 bp

Definition

Oryza sativa Japonica Group Os04g0640500, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:32972942..32980171

Sequence Coding Region

32973070..32973462,32973582..32973626,32973721..32973759,32974011..32974181,32974671..32974823
,32974991..32975026,32975834..32975877,32976219..32976309,32976396..32976437
,32976533..32976641,32976790..32976904,32976983..32977032,32977206..32977284
,32977392..32977442,32977595..32977736,32977944..32977988,32978263..32978370
,32978472..32978513,32979017..32979199,32979561..32979680,32979810..32979914

Expression

GEO Profiles:Os04g0640500

Genome Context

<gbrowseImage1> name=NC_008397:32972942..32980171 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:32972942..32980171 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgcttctgctccatccgcgtccgctccccgctccagctccggcgaggcgattcgagcccgccgtccgggtcccaccgcctcgccgtcgtcgtcgtcgtcggcggcctcctcttcctccgctcgcctccgcctccgcctccgccgcgatctacagcgttggtagctccgacgaggacgcgttcaccaggtgctccgggtacctcttcgaggagggcgcggcgaccgagggggagctccccacggcttacgatctcgccggcatcggcgccgtctaccgccgcaggccgctcctcgtggtccggcgggcactgcagattggcacctccttcggccgatggtttacgctgcgatacctcgaccgcgtcaacgagcgctccgacgacatgttcgagatcagggctgctcaactcaggcgaatactattggaacttggcccgacatttgtgaagattgcacaggcagtttcatcgcgaccggatgtgattccacctgcgtaccttgacgaactttcactacttcaagaccgtatagcaccattttcaactgaggttgcttttaacattatagaaacagagcttgggttgccactggacatgattttctcagagatatcaccagagcctgttgctgctgcatctcttgggcaggtttatcaggccaggcttcgttccaacaggaaggttgttgctgtcaaagtacaaagacctggagttcaagcagcaatttccttggatatctacatcttgagattccttgctggtgtcgctaggaaggctggcaagctgaacacagatcttcaggctgtactagatgaatgggcatcaagtttatttagggagatggattacagagcagaagcaagaagtgggcttaaattcagggaattatatgggaaatttagagatgtactagttccagaaatgtatctggaacaaacaagaagacgagtccttatcatggaatgggttgagggggaaaaactgtcagaagtcagagaccaatatttggttgaggtcggagtatactgctcactttctcagcttttggaatatggattttaccatgcagatccacatcctggaaatcttttgcgtacagttgatgggaagctagcgtatttagatttcggaatgatgggagaattccgacaagaacttcgtgatggatttattgaagcctgtcttcaccttgttaaccgtgattttgatggtttagcaaaagattttgttactctcggtttacttcctccaactgctcagaaagatgaagtgacaaaagcattgacaggtgtatttcaaaatgctgttgacagaggggtgcaaaatataagctttggagatctgtcagggaatcttggtcgaactatgtataaattcaagttccagataccttcttacttctctcttgtaattcgaagccttgctgtcttggaaggcattgcaatcagcttcaatcccaactacaaagtcttgggcagttcatacccatggattgcaagaaaagttctcacagacagctcaccaaagctccgatcaactttgcagacgcttctttataaggatggcactttccagattgaccgtttggagtctttgctaactgagtcgcttcgagcaagaacagagcagtccctgaccagggatcaacaagaggaaactgatagttccaaatttgcaattaaacaagtcttgtcatttactcttactgaacagggtgccttcgtgaaggatttacttcttcaggagattgctaagggattagatgcacttggagctgctacattgagttctgcaacatctgctgcagcctccagattgccgtttgctgttccatccccatcaccctcactagacaatgaggatgccactaacttgagaaatttacatcgccttctcctacttttgtccaaggtccctcagaaggaggattcatctccaattccaggatacaatagcactgaggagaacgaaggtgatagtacagatgagatttctcttgtgttatatgaaatgagatctctaccagagttgttgccagtactttctgtcattcctgagcttccaccagagtcccaacagcagtttctcctcctgccagcagatttaactaatcgtcttctgtctcgcgctgttgcaagaaccatcagaagaatattcatatga</cdnaseq>

Protein Sequence

<aaseq>MLLLHPRPLPAPAPARRFEPAVRVPPPRRRRRRRRPPLPPLASA SASAAIYSVGSSDEDAFTRCSGYLFEEGAATEGELPTAYDLAGIGAVYRRRPLLVVRR ALQIGTSFGRWFTLRYLDRVNERSDDMFEIRAAQLRRILLELGPTFVKIAQAVSSRPD VIPPAYLDELSLLQDRIAPFSTEVAFNIIETELGLPLDMIFSEISPEPVAAASLGQVY QARLRSNRKVVAVKVQRPGVQAAISLDIYILRFLAGVARKAGKLNTDLQAVLDEWASS LFREMDYRAEARSGLKFRELYGKFRDVLVPEMYLEQTRRRVLIMEWVEGEKLSEVRDQ YLVEVGVYCSLSQLLEYGFYHADPHPGNLLRTVDGKLAYLDFGMMGEFRQELRDGFIE ACLHLVNRDFDGLAKDFVTLGLLPPTAQKDEVTKALTGVFQNAVDRGVQNISFGDLSG NLGRTMYKFKFQIPSYFSLVIRSLAVLEGIAISFNPNYKVLGSSYPWIARKVLTDSSP KLRSTLQTLLYKDGTFQIDRLESLLTESLRARTEQSLTRDQQEETDSSKFAIKQVLSF TLTEQGAFVKDLLLQEIAKGLDALGAATLSSATSAAASRLPFAVPSPSPSLDNEDATN LRNLHRLLLLLSKVPQKEDSSPIPGYNSTEENEGDSTDEISLVLYEMRSLPELLPVLS VIPELPPESQQQFLLLPADLTNRLLSRAVARTIRRIFI</aaseq>

Gene Sequence

<dnaseqindica>129..521#641..685#780..818#1070..1240#1730..1882#2050..2085#2893..2936#3278..3368#3455..3496#3592..3700#3849..3963#4042..4091#4265..4343#4451..4501#4654..4795#5003..5047#5322..5429#5531..5572#6076..6258#6620..6739#6869..6973#ctctttttggcgcctaatcggctaatcccctccagcttccacttctccccggttcatccgctctcaaactcttcaatcctcgattccccattcgaaatttcgagtccctgagatccccacgtttccagatgcttctgctccatccgcgtccgctccccgctccagctccggcgaggcgattcgagcccgccgtccgggtcccaccgcctcgccgtcgtcgtcgtcgtcggcggcctcctcttcctccgctcgcctccgcctccgcctccgccgcgatctacagcgttggtagctccgacgaggacgcgttcaccaggtgctccgggtacctcttcgaggagggcgcggcgaccgagggggagctccccacggcttacgatctcgccggcatcggcgccgtctaccgccgcaggccgctcctcgtggtccggcgggcactgcagattggcacctccttcggccgatggtttacgctgcgatacctcgaccgcgtcaacgagcgctccgacgacatgttcgaggtccgccatgctttacgtttgcttttgatctcgtgcacgcttgctgtttgattaaattcctacatttttggggggttgttcgtgagctgattttgcattggtcggtgctgatgctgcagatcagggctgctcaactcaggcgaatactattggaacttggcccggtatgcttccgtttgcctgtactgtgtacatatgggctcgttcgtgtaccgttatgatgattgatgggtatgtcattctgctctttgatggcagacatttgtgaagattgcacaggcagtttcatcgcgaccggtgagcctcagcagccaagtagtcgttgcattttcatcacttctattttagagctttagcttatgattttgatgaattgttatctggcaaatggttagtcatgcaccatttaacagtcacatttattggagcatgaatgtgctattctgcttgcataatatatcagttgctagtttagacaactcagtggctattctcttgctactaaatgattggtgggccatggacacctcctgtctcatttgttgcaggatgtgattccacctgcgtaccttgacgaactttcactacttcaagaccgtatagcaccattttcaactgaggttgcttttaacattatagaaacagagcttgggttgccactggacatgattttctcagagatatcaccagagcctgttgctgctgcatctcttgggcaggtatgtttgttttattttttttgtaatgtcttgaagattcgatctacctcttcagcaactttgtgattacctgtttgcactttgaactgtataaacagaccaaacttgtgtgcttgtctcctgtcagctgcacttagttaaattcaactgtacgattcatgtcaacttgttgatgtttgaactgtgcgcattaaaaccgatgcacggcacaatgtttatttacttttataaagtaatattcaaaactaatttcatttatttgaaagctagcacctggaagcatctaaacttaaactaaacaaattctggctgtaacatgctctgagttgttcgataggatggggatcccaaaactgcatactgtttcagccctgctaatcaaccatgttatgttgaacaattggtgaaatgacagtgatactctgtatagtgcattgtcagatattttcatctctggacgatataacatttcatattctactattgtaggtttatcaggccaggcttcgttccaacaggaaggttgttgctgtcaaagtacaaagacctggagttcaagcagcaatttccttggatatctacatcttgagattccttgctggtgtcgctaggaaggctggcaagctgaacacagatcttcaggtaatgctaaagtcctatagattcccaatgaaatcaaataaagtggtcattgcgcaacaggaagggaagttaccatttaataagaaatctcaactatcttattcatagagattctatttatatatacttaatttataactgtttgtatctgattacttcatatgcaggctgtactagatgaatgggcatcaagtttatttagggtaactttctacacatgctcaccctttaaatatttcacatcttttcatgtcatctgaagtaatcaatgtggctataggtatgaaaattaaacattaactagcacaatccgaaaggaatggtgttattaggctgtcataacaataagctgaaaaaaaaatggaggttagcatccaaatgactgtggatcagtggaagtcaagtgtactattcaattaaagttagaagattttttgagctaacattctattctagtagtaactctaagcctagttcactaggattttgtttttttttttgccgggtcggcggaagaatgccggccaaatttcattaagattgggagtaaaatacatgtatcccgacattaaactgtcgagtcaaggtaaaagccttgaaacaaagtgagaaaaagcaaaggggaaaactatttacagaagcagcaactaaaaggtctactcctcactaaactgaaaaataccggcagctctccagaccatcacatcttctttaatgtcttcactaggattttgtaattcgaagcctgcatatatacaaatggaacgacacatttacatgccaaagaagaacttgttggaaattcaggatcatcgtatgaatatgaatagtaaagttaaataattattgatgaattgtttttaaggaaacaagcattacctttcttgcaagtctgtcctatgacttgcaatattctatgtacacttagctagttagctacctgattttaaaaataaggttcatattcttagagctacacattgaatacaggtaaatcacatttaatgcaggagatggattacagagcagaagcaagaagtgggcttaaattcaggttacattcttcatttattagcaaaagtcaattgaattgctttgtctaatatgaacactgttactatccattatcttgaaacaattcaagttacaatttgtagaaacttcaactagtctgtagttcaatagacataaactttttattactttaacaagcccttgcaatttctgaaaagtatattgttctaacatggggccagttcacagaaacattaaatccgttgctccgccttgactatgcatgagtgctatcactaaaccaatatgcattgttcattttggctgaatcgaggataaatataacacggataccccttttgcacttcctttctgcaacagggaattatatgggaaatttagagatgtactagttccagaaatgtatctggaacaaacaagaagacgagtccttatcatggaatgggttgaggtgaaatctgcactctcattcactcgttagcaacttgaacagcgcataggcaaccctagttactggcttatactgtggtcttttagggggaaaaactgtcagaagtcagagaccaatatttggttgaggtaagaccagtgcatatataagtgattgaaatcttgtacctcactattagtaacaccgttgaccagatagatctgctgacattgttacctcacaggtcggagtatactgctcactttctcagcttttggaatatggattttaccatgcagatccacatcctggaaatcttttgcgtacagttgatgggaagctagcgtatttaggtaataattgtgttattctgtttctgcctttaatgtttctgattttttagtcttggtaatgagttagttcctaaatttactcatttgctaccctttacatgaatcttgttccattttaactatctgaaacattttgttctctatgtagatttcggaatgatgggagaattccgacaagaacttcgtgatggatttattgaagcctgtcttcaccttgttaaccgtgattttgatggtttagcaaaagattttgttactctcgggtaagaataagcactaacatccagttggcgctgggtatctgtgtatccccatatctgacctatctttaatttctgcagtttacttcctccaactgctcagaaagatgaagtgacaaaagcattgacaggtactccagatctagatggatgctagcatgctaagaaaagaaattactgaaccttaaagtcgctttaccctgctactgctatccttgttacgttaattttggatcattaatgatgatataataacatatgtccatttggcacaactcacaattccctgtttttaatatctcaggtgtatttcaaaatgctgttgacagaggggtgcaaaatataagctttggagatctgtcagggaatcttggtcgaactatgtactaatctagtttatgaaaccctattttacaaaaataaatggggtttatatcaaactgttgattctctataagactgctcttaactagagttaatcttgtttcaggtataaattcaagttccagataccttcttacttctctcttgtaattcgaaggtaataagttttccctagcgtaggtatcactctctaccagtaactatatttattaacggacaacaaacatgcaaattactactctagaggtctaaagatgatgctgccttgctgttttttacatttgaaaggtttttgatgttatttttcagccttgctgtcttggaaggcattgcaatcagcttcaatcccaactacaaagtcttgggcagttcatacccatggattgcaagaaaagttctcacagacagctcaccaaagctccgatcaactttgcagacgcttctttataaggtcaattaaccttttaattttcaggcaattataaattatgatgaaacaagtgaccatgctagcaagtttgcaaaaccaaagaagataataggaatacaggattgtttaaattttactttgggtttcaggtctaagattctctactgcaagtggaacttctgtcagtcatgactaacctttttatcttccctccaactaaatgtataggatggcactttccagattgaccgtttggagtctttgctaactgaggttggttaatttcccacatgtttaagtgtgttctgttgatcttaattgtatgatataattgcttttttatttctatggtatgacatggataattagaatattctatgacctattttgacttgactggttctagagctgattgacggtattttgattaaaatctagaaaccaggtagaagctgactggttttcagcaaatgcatcctttccagttttatgaaccctgttccaaccattttctcagaaaatgtctccttttgttttcttgttacagtcgcttcgagcaagaacagagcagtccctgaccagggatcaacaagaggaaactgatagttccaaatttgcaattaaacaagtcttgtcatttactcttactgaacaggtaaagtgaactacgattctttaatattgaactccctctaggtaataagccaagattgatatcgatggtcgagcatttgaaactttttgttctctttccagggtgccttcgtgaaggatttacttcttcaggagattgctaaggtcagttaactcgttagaggtgcagttttcatgtttgttggcttgaatcttgattatcaaccaacattctgactgttctgaatagttattcacatggaaaagagcacttgaacttagtgatgggggggggggggggggaaccagttcatttatgagttttcggttcatcataaatcagatataactgatttttgcacgttctatgccatgggtactagtgaggcagctagcaggtaatatgaattagaaattgtgttcagggaagttctaattgatatagactttgcaaataaagcaggaaattcattttgtttcaaagaattgagaactttggaataaaatactccctgtgattcatctacctttggttcctaattaatcctgatttagtttacaagataaggaattctctttggcatcatgaatctttccttgaattgatatatatggcaccttttttataggttacataagctatgctttctcaagcgttgtattttcagggattagatgcacttggagctgctacattgagttctgcaacatctgctgcagcctccagattgccgtttgctgttccatccccatcaccctcactagacaatgaggatgccactaacttgagaaatttacatcgccttctcctacttttgtccaaggtccctcagaaggaggattcatctccagtaagtaaaattttcaataaaagatcacttctcaatttttcacatttcttaattatagtaggtgtgggtgaaatgcataaaatgccctgaccccctggctataaacgattgtaagaaagcatttggcatatacagaactgaattctggattaaattgagaaaacgactatgtagcattatctttacaaaatgatgtttaactggcaaatcacaataccggcaaacctcccaaataaatgacccggatttgcaaaactaccctattagaactcaaattggaaaatgtactaggagtagtggagtactatttgagtctttatactgtactacgattcctcattctatgcaatcctttttgcagattccaggatacaatagcactgaggagaacgaaggtgatagtacagatgagatttctcttgtgttatatgaaatgagatctctaccagagttgttgccagtactttctgtcattcctgaggtaagaatggaaatacaagtaggatatggaaatacaagtaggatggaaatgtatatcaggatcgacgttgaatatgatctgtagcttttgagctctcacactaatgcagtaatgctcaccttaacgcagcttccaccagagtcccaacagcagtttctcctcctgccagcagatttaactaatcgtcttctgtctcgcgctgttgcaagaaccatcagaagaatattcatatgaagatagagcataaaggtacacatttccaatctctgctacatgaaatatttttatttaattttttttgagaaagcgctaaatgttcatagaaattttcccccaaatagtaccactgccttctaagctagaaatccaggatccgtcttattattcaccatgactaattttgagttgtagttagttcaaaaaaaaatgaattgtaattcttcatgtgacaatacagttcttttcgggaatcatgtattacatatattttt</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0640500, RefSeq:Os04g0640500