Os04g0653600

From RiceWiki
Revision as of 11:32, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os04g0653600| Description = Similar to AINTEGUMENTA-like protein| Version = NM_001060643.1 GI:115461015 GeneID:4337245| Length = 4551 bp| Defin...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os04g0653600

Description

Similar to AINTEGUMENTA-like protein

Version

NM_001060643.1 GI:115461015 GeneID:4337245

Length

4551 bp

Definition

Oryza sativa Japonica Group Os04g0653600, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:33740514..33745064

Sequence Coding Region

33740624..33740681,33740797..33741187,33741466..33741548,33741708..33741716,33741845..33741933
,33742117..33742190,33742404..33742454,33742570..33742646,33743855..33744510

Expression

GEO Profiles:Os04g0653600

Genome Context

<gbrowseImage1> name=NC_008397:33740514..33745064 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:33740514..33745064 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggacatggacacctcgcaccactatccatggctcaacttctccctcgcccaccactgtgaaatggaggaggaggagaggggcgcggcggccgagctggccgcgatagccggggcggctccgccgccgaaactggaggacttcctcggcggcggctgcaacgggggatcaagcggtggcgcttgcccgccggtccagacgacggcgccgacggccgccgagctgtacgagtcggagctcaagtttctcgccgccggcttccagctgagcggcgcggctggggcggcgccgccggtgcccgcgctgttgccggcggctgctctagagcagaccgacgagacgaagcagctggccttgccgccgcaggccgcggtggcgccgccgccggagcagaagaaggcggtggactcgttcgggcagagaacgtctatctaccgcggcgtcacacggcatcggtggaccggaaggtacgaggcgcatctgtgggataacagctgccggcgtgagggccagagccgcaagggacgccaagtgtacttgggtggctatgataaggaggagaaagcggcgagggcgtatgatcttgccgcgttgaagtactggggtcctagcaccacaaccaactttccggttgccgagtacgaaaaggagcttgaggagatgaagcatatgacacgccaggagtttgtagcttcacttaggaggaagagcagtggattctctcgtggtgcttctatatacaggggtgttacaagacatcaccagcatgggcgatggcaagcaaggatcggaagagtggctggcaacaaggatctctacctcggaacattcggcactgaggaggaagctgcagaagcttatgacatcgcggcgatcaagttccgtggcctgaatgctgtcaccaactttgagatcggccggtataacgtggagagcataatcagtagcaaccttccaatcgggagcatggccggcaaccggagcaccaaggccggcctagagctcgctccgtcgagctccgccgacgccatcgccgccaccgaagcgaaccacaccggcgtcgcgccaccgtcgacgcttgcgttcacagctcttccaatgaagtatgatcaggcagattacctgtcatacctcgcattgcagcatcaccagcaaggaaaccttcaggggctaggcttcggtctctacagctcaggtgtaaacctggatttcgcaaatgccaatggcaatggagccatgtcaaattgctacaccaatgtctcattacatgagcagcagcagcaacatcagcaccagcatcagcaggagcagcagcaagatcaacaggatgatcagtcacaaagctccaacaacagctgcggctccattccgtttgcaacacccatagctttcagtgggtcatatgaaagctccatgacagcagcaggcacctttggatactacccaaatgttgcagcctttcagacaccaatctttgggatggaatga</cdnaseq>

Protein Sequence

<aaseq>MDMDTSHHYPWLNFSLAHHCEMEEEERGAAAELAAIAGAAPPPK LEDFLGGGCNGGSSGGACPPVQTTAPTAAELYESELKFLAAGFQLSGAAGAAPPVPAL LPAAALEQTDETKQLALPPQAAVAPPPEQKKAVDSFGQRTSIYRGVTRHRWTGRYEAH LWDNSCRREGQSRKGRQVYLGGYDKEEKAARAYDLAALKYWGPSTTTNFPVAEYEKEL EEMKHMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGT FGTEEEAAEAYDIAAIKFRGLNAVTNFEIGRYNVESIISSNLPIGSMAGNRSTKAGLE LAPSSSADAIAATEANHTGVAPPSTLAFTALPMKYDQADYLSYLALQHHQQGNLQGLG FGLYSSGVNLDFANANGNGAMSNCYTNVSLHEQQQQHQHQHQQEQQQDQQDDQSQSSN NSCGSIPFATPIAFSGSYESSMTAAGTFGYYPNVAAFQTPIFGME</aaseq>

Gene Sequence

<dnaseqindica>111..168#284..674#953..1035#1195..1203#1332..1420#1604..1677#1891..1941#2057..2133#3342..3997#atcttcaccttcacctagctgctgctgctgcttcttcttcttctatctgctactagtagctcgcagaaaaatactcgcctcgatcgacaagctctcgttgttaccttaccatggacatggacacctcgcaccactatccatggctcaacttctccctcgcccaccactgttagtactcattctacttcgttgtctgttcatcgatcacatgtgtgtgtgttcttggtcattttttggagtaagtgccgtgcttatgcgttggtatgtgtgtgtgtttgtgcaggtgaaatggaggaggaggagaggggcgcggcggccgagctggccgcgatagccggggcggctccgccgccgaaactggaggacttcctcggcggcggctgcaacgggggatcaagcggtggcgcttgcccgccggtccagacgacggcgccgacggccgccgagctgtacgagtcggagctcaagtttctcgccgccggcttccagctgagcggcgcggctggggcggcgccgccggtgcccgcgctgttgccggcggctgctctagagcagaccgacgagacgaagcagctggccttgccgccgcaggccgcggtggcgccgccgccggagcagaagaaggcggtggactcgttcgggcagagaacgtctatctaccgcggcgtcacacggtaagctatagctaagctaagctgagatcgatcagtctatgcatgtgtcggccataaaatctaaaaataaattcttagctagctcgtctaatttcttgcacgcaaactaatcatctcgtgttcgtgtgcatccttcatatatagattcacatgcatcatcgatcgtattaataggatttagtagtagttttttttgttaatgggagtagaagaatcaaatgaccaatatttgttcagagattttaattagggcataaaaaatccttggttatgtataggcatcggtggaccggaaggtacgaggcgcatctgtgggataacagctgccggcgtgagggccagagccgcaagggacgccaaggtcactactcaataattttactactgcattttgctagctatttgcatctaatctcataagtgcatccagctaacttcgattttcttttttgttctgtcgacttgttggcaatgcttcttctcatttatggctgatgtttctggtgtcttcgatctacagtgtacttgggtaagaaaagacacatgcatctagtctcttggccagctactagctagtagtagcagctattgtaactttgcatcgtttggaacattttaaggtgaatgatgcagagagtttgttcgatgattttacaggtggctatgataaggaggagaaagcggcgagggcgtatgatcttgccgcgttgaagtactggggtcctagcaccacaaccaactttccggtaattaactctcatgcatatatataaagatggatttattacatatttacaatgcatgcatgatcaaaatatatagctcctgattgatgcaagtgtgtagtaaaagcatgtgcatcatgcgtatatgtgtgtgtgtttttggttgatgtatctttatggggcaagctgtttataatctttcaggttgccgagtacgaaaaggagcttgaggagatgaagcatatgacacgccaggagtttgtagcttcacttaggaggtacaagctaatgatcactctttagcaatgtttaattatatgttgtgatattccatgcatggccattcatcaaagtatatatgctcccatgcaaagccattctatgcatgcatgtttcatcatgatcacctgtttttttatatgtatgtatgtagctttgttaatttatttgttcatgtcagcttgatgaaaaacttgtactggtgcatgcaggaagagcagtggattctctcgtggtgcttctatatacaggggtgttacaaggttcatatatatattggtcttgtactaatctttcacttgtagcctagctagccatgtttggcctcttgcacgtaagtctcaggtaactgatgttttgtgtgatgcaaccatgtagacatcaccagcatgggcgatggcaagcaaggatcggaagagtggctggcaacaaggatctctacctcggaacattcggtaattaagtttgtacattaatttccatgttgaatctgtcgtccatgttcattttttttgtttagcagaaatttgttaagcctttttttgttgccctcttcttcaacaaatgtatgacctgataagaaaaaatgatatcaataacccaacaaaacctctcaacatttgactaattatatctgggtgatgtttgcagaaaacacgcatgtaggcaatactttcatgcatgtaggcaatactactttcatactaatgttttctaatactagtggatctactgacaatgcaatgtcagtgtgctcatcatgtagaagaatgctcaagagttttctcgacgctaagctatacataatctttgtcattagaactttcttttatcaaagatgaaattgcaagtaggagggtgcatgcacgtgttgggcccctcattagctagcattagtcattttcttacactcaacattacaatattaagcccttgcacgtaggttccatcttaatttatgctttgcacacacagggcttgtagctagattcgtcgacatattttatgcaggtcaaaaacatctactttgaccaagatgtaagcatgcccacatttgattcgaaatttgtcatcttttgcgcgccatgcatgatggttttggggctttatgcagcaggcaaggaaaaaagaagacacaccatgcttagaccatggacgcatgtatatatctatggctgattgatttgcaaacctgaacactactgcctttcttcgttcactgcatgtagcagcccgtgtttggaatatcattattactgctattaccgcgctcggctttccacaaagcatgtgattggtgattaatttactactgccttgctgaaccggccattattattgtactatgttggatttaactaagcttgatcaccacactgggctacagtttcgtcagttgttgcttggtccaaagtcttactggtgcaacttgctggttatctataaacttactggaaggctcactgcactatgatgccatactttgttaagtacaattagctaattcaaatatgtttcatgtgacattactattcagccattagtaatttacaggtggtgttgattttacttcaagtacctaaataaaattgacaataacgcatcgttcttctgcatatgtgtggtgttcaacagctgattgttgcttgcttccttctttcaggcactgaggaggaagctgcagaagcttatgacatcgcggcgatcaagttccgtggcctgaatgctgtcaccaactttgagatcggccggtataacgtggagagcataatcagtagcaaccttccaatcgggagcatggccggcaaccggagcaccaaggccggcctagagctcgctccgtcgagctccgccgacgccatcgccgccaccgaagcgaaccacaccggcgtcgcgccaccgtcgacgcttgcgttcacagctcttccaatgaagtatgatcaggcagattacctgtcatacctcgcattgcagcatcaccagcaaggaaaccttcaggggctaggcttcggtctctacagctcaggtgtaaacctggatttcgcaaatgccaatggcaatggagccatgtcaaattgctacaccaatgtctcattacatgagcagcagcagcaacatcagcaccagcatcagcaggagcagcagcaagatcaacaggatgatcagtcacaaagctccaacaacagctgcggctccattccgtttgcaacacccatagctttcagtgggtcatatgaaagctccatgacagcagcaggcacctttggatactacccaaatgttgcagcctttcagacaccaatctttgggatggaatgatttggggaggtggcactttgcaggcaaaaaggatgaagagcctgatccctgatcagaggtgatgaggatcaagactgacatagttcattctcacacaacaacaacaacaacaaacataaagagcaggggaaaagagaggtaatgtagtagtagtggtatgatgataaagtatgatgcaaacatagtaggaagcagtatgcaggagagagatactgacaggtcagagacaggaggagaagactctgctaacaaaacgatgcagcgcaagcatattgttttattttactgcccttttacccttttgtagctttgttttcttgtgcttttgtcatcgctgagctttgtttgccgctcagcttcttttgagcttttctttctactgacatgattctgcaagtgccatgatagcttagcccatgtacaatggaagcagggacgtctctttgtagcttttgcttcttttcttttgttagatcgcctttggtagcggcccctgtttactcaagaagttgctctccctccacaagtatacaatgaaatgtactgcaggaact</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0653600, RefSeq:Os04g0653600