Os04g0673400

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Revision as of 11:34, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os04g0673400| Description = Similar to Uracil-DNA glycosylase (EC 3.2.2.-) (UDG)| Version = NM_001060767.1 GI:115461263 GeneID:4337373| Length =...")
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Gene Name

Os04g0673400

Description

Similar to Uracil-DNA glycosylase (EC 3.2.2.-) (UDG)

Version

NM_001060767.1 GI:115461263 GeneID:4337373

Length

5098 bp

Definition

Oryza sativa Japonica Group Os04g0673400, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:34782535..34787632

Sequence Coding Region

34782535..34782654,34783664..34783785,34784192..34784265,34784470..34784553,34784679..34784814
,34785540..34785570,34785962..34786120,34787109..34787329,34787419..34787632

Expression

GEO Profiles:Os04g0673400

Genome Context

<gbrowseImage1> name=NC_008397:34782535..34787632 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:34782535..34787632 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcgccgcctctccctcccaccgcccccaaaaccatcgccgactacctcatccgcccctccaagcgcctccgccccacctctcccgctcccgccgccgctgcgtcggcccccctctcctcctccagcctctcgccggagcagcgccgccgcgccgacaccaacctcgcgctcgcccgggcgcgccgccacctccgcctcgccgagtccaaagcgtcgggcggcaccgcgaagctggaggagctgctcgtcgaggagacgtggctggaggcgcttcccggggagctgcacaaaccctacgcgctcgagctctgccgcttcgtcgcccacgagaggttgcatagcccggtgcccgtctacccgccgccgcatctagtcttccacgcgcttcacgccaccccgttcgaccgtgttaaggccgtcatcatcgggcaggatccataccatggacctggtcaggcgatggggttgtctttctcagtaccagaggggatcaaaattccttctagcttagcaaacatatttaaagagctgcaaaaagatctaggttgcaccgtgccttcacatggaaacttggaaagatgggctgtgcagggtgttcttatgctcaacactgtattaactgtgagagaacatcaagccaattcacatgccaagaaaggatgggagcaatttactgatgctgtcattaagacaatatcactgaagaaatctggaatagtctttattctctggggaaactcagctcaagcaaagacaagattgattgatgaaacaaaacaccacattttgaaatccgctcatccatcagggctgtctgcaagcagaggtttctttggatgcagcacttgcatatcaggattgccctatatgcggcgccataatatctatttgatgctagacaacccaccaatggctggcacttttctaaaacgaatcagatcttggagaggctgggactatctgccattgattggcaactctagaccatttgaagacatcatgtggtctgtctgcctgacaaccacctcagctttgaagtgggctccattgcaatggaagcatcgcaagtcgccgatcttggaaaagatcggcacgcacttggatggaagtctagcagcaaagcagccggtctcttgcactgttcgcaggtcgttctga</cdnaseq>

Protein Sequence

<aaseq>MAPPLPPTAPKTIADYLIRPSKRLRPTSPAPAAAASAPLSSSSL SPEQRRRADTNLALARARRHLRLAESKASGGTAKLEELLVEETWLEALPGELHKPYAL ELCRFVAHERLHSPVPVYPPPHLVFHALHATPFDRVKAVIIGQDPYHGPGQAMGLSFS VPEGIKIPSSLANIFKELQKDLGCTVPSHGNLERWAVQGVLMLNTVLTVREHQANSHA KKGWEQFTDAVIKTISLKKSGIVFILWGNSAQAKTRLIDETKHHILKSAHPSGLSASR GFFGCSTCISGLPYMRRHNIYLMLDNPPMAGTFLKRIRSWRGWDYLPLIGNSRPFEDI MWSVCLTTTSALKWAPLQWKHRKSPILEKIGTHLDGSLAAKQPVSCTVRRSF</aaseq>

Gene Sequence

<dnaseqindica>4979..5098#3848..3969#3368..3441#3080..3163#2819..2954#2063..2093#1513..1671#304..524#1..214#atggcgccgcctctccctcccaccgcccccaaaaccatcgccgactacctcatccgcccctccaagcgcctccgccccacctctcccgctcccgccgccgctgcgtcggcccccctctcctcctccagcctctcgccggagcagcgccgccgcgccgacaccaacctcgcgctcgcccgggcgcgccgccacctccgcctcgccgagtccaaaggtaggtgaccccgcgcacaccccaccacaatctacgattcagtccgcgcgaacgcccgccccttagggttttggtgctggcggttttagcgtcgggcggcaccgcgaagctggaggagctgctcgtcgaggagacgtggctggaggcgcttcccggggagctgcacaaaccctacgcgctcgagctctgccgcttcgtcgcccacgagaggttgcatagcccggtgcccgtctacccgccgccgcatctagtcttccacgcgcttcacgccaccccgttcgaccgtgttaaggccgtcatcatcgggcaggtatcgcatcctcccccattttctctcgtcactccctaagctaatccattcgcgtggatttctgtgctcttaggaggtatccttttcaaatatacatagcagcgtaaacttgtggccattttaccttgcttgtagaatttactatcaacgcttacatgtaatggttgcacttgtttctcaagtaatagataatgtatgctgtttgtgatcaggatttttttgcaatggggctaattatctttgatgcttatagtgtgcttcattaattctaggagattgtggaacacttgttttgctggactgcttctgtggccattgatgcatttgtgtttaatgtggggtgtttttgttgttttatattgttgattaattcttacggaacatggtatgaatttggttctagatagtactaaaatgcttgataggcagtggaaaacgcccgacaggtccactaatgtagcatcattttgaggatctggtacttatttttgtttcagtgtgttggtgttgtttggcattagattgacaacatggataaggcattattatgtcattagaatataaatgatcgcttctgttctccttgtatcatatcatgctaaaataagtgatttgagcttgttcaccttgcttgccctttatatgatagtaatagtgtttacctttttttttttaatcattttggatgctagcctgctcaatcatatttctacaacagctagttcaggggaaaataagtttatgcctcgcctttttgttcagcttttaattgatggtgttgttttactgcttttgtgacataccatatgttttgatctgtccttaaaccactcggtacttgtaaccctgagcaacttagacccatgtagatgtaattttttctttctgacatcatagaacatgccatgagttcctgcagtactttaattgcatttgaattgaactgttcattttcattgtgtcatgttgtggaatgtctattcttcaggatccataccatggacctggtcaggcgatggggttgtctttctcagtaccagaggggatcaaaattccttctagcttagcaaacatatttaaagagctgcaaaaagatctaggttgcaccgtgccttcacatggaaacttggaaagatgggctgtgcaggtaaggcggtttgataaacatccgaataaactgccctgagtccctgacatttgtaacaacatgccgtttctcttatttttatcttaatgttaactcgtgttgcaaaaacaagaggatttgtatgcactagtacctttaacaactagatagttttgtattttgtggtctatatataacactatttggacgccatggagacgataggtctgttactttgagacaggtcttgtgaaggaaaaaatccactagggtctagtttgttcttattaattctatctgatatagaaagtggataagctgttattccattagttcttagcaaagcatgataaactttctatgactgttttttgggagatgttgtctaacatgggaaacacatgttttacagggtgttcttatgctcaacactgtattaactggtatgattattgttcccatttacattgaaaactatttttatttttgttgctttgttagctcttatgtattcataatcttgattaaactgtgatgtaacttgtaggttcttttataatcatgaccacaaaaataataaagtgttgcattacacataggcctgttttgggagcccacgatccatggcccatccacagagatgggctggggattacaggctccccaaaggtttcttccagttgctactgtatcacatttatttgatgttgcttgtcctcttcctctagcttagtgcaaagtaatgcattcctctgttgagaatctttattccatgggaattcactattgtgatcttagttgctctatccttgcacgagtttcttatcagcactgaacaatcctacttcttaattttctatagtgtcaatctataatcagagaaataaaacatctcttttgttgttactatattgctaggataataatgtaaacgctaaacaatttccttactgaaagctccaactagaagtttggttgccaccagctgtgctgttctgcatttccagcaggagataaacaatactaatatcattaccatgttagtttcccattaaaatctactctcagtatctgatctgcctgaatgctgtggtagaattgatttgtttggaagttgtatcttgttgggtatatttttgctgatttcattttcatcttgtcgggccagtgagagaacatcaagccaattcacatgccaagaaaggatgggagcaatttactgatgctgtcattaagacaatatcactgaagaaatctggaatagtctttattctctggggaaactcagctcaagcaaagacaaggtattgcttcgttcacatctgcaaatctgtgacttggaatgttggcgctatcaaaagaatattttgtaaaactggctattataatgtcagctgagagacaagagtacctgcatgctgttttgcagattgattgatgaaacaaaacaccacattttgaaatccgctcatccatcagggctgtctgcaagcagaggtttctttggatgcaggtttgttttcttgtcagataaaatgaactttcttcatttgtttctgtgagttaaaaaataagactagactctacataggagtaaaacatcacagaagggagagctgatatatttctgtaacttaggttaaatttgaatagcatacttcagagagaataaagactatgttacttagtataaaactgaattattatgattgttcagcacttgcatatcaggattgccctatatgcggcgccataatatctatttgatgctagacaacccaccaatggctggtatctttgttactgtagatgatttagtgggtgggttataatgatttatcctaagatcaactttaactcacctgcaccactatacaatggtactgtcggtccatgctgagtggtgctatactgctataaaccctcaatgcttttggccgtcttgtcctgtcttgtttttgccaacttgatattacttttgccttttcactcactagtgttaatggctagatccaaatgagcattagctcaggcacaacatatagaacgtgaattggatattggcatctcagatactgtttatggggccaattcaaatcattctaatgctacttttgcccttgtgattatcgttgaatcagcctgcaataggataaatttttattgatgatcgttgtgctgtgcttatcttaaacaggcacttttctaaaacgaatcagatcttggagaggctgggactatctgccattgattggcaactctagaccatttgaagacatcatgtggtctgtctgcctgacaaccacctcagctttgaaggtacttgttgcaaggaccatcgaattcggccaaaattttgtaggaccttaaattatatatggccgatcaaaatgctaatgtaattacgcagttcttatatggtatctaatgccgcaccgaaacatctaaattgtttcggttgtcgtatgtgcagctactttgcgtagcgcttgggcgccattttggtcgctttgttagatctgaagaattgcttaacaaccgtcctggcctttcaagttttttaaataccataaagccagatcgtccttcctcatctgggatccctttgtcctcttagattttgctcgtaggcctgtcaccaacccttagatcctaagaaattcccgtgctagagacatgtcccctcttttaattcgatgagtgccgcacctacgtacagagtgagtatttaaagcccgtgatgagcaggtgaaagggtacacgtctcgcacgatacctaccgtggctgtagtattttttgtacagcaggtggttgcctgcaaataattagacagatactccatgcttctagagcttgcagaaaaccggcacgtcagtcgccgtgtgtgcagccagagagtgacatgtaatactccagaaccgcagcgtaagcgttacaactccagaatcgcagcgtacgtacgcatcaggcatcgcaacgtgttagtccatccagagtccagatgctttgctgaaacttgacacacaaccatgcacgttgtctcatcagctcaaaccgggggcagtagaaaacgacatggtggcattccatgtattgacatcgcatccgatccttccggctccgtcaagtcttggatagattgtgattgtgagatcgatgcatcctcccgtcgtaatctctcggcctcacatcaaaattttaagtattccattccacggggcaaaatcaccggatctttgcagatctgcaagcgtgacttccatgtttcacccagctccatctcatgtttgataacatgactactaaatcgcacctacgtacgtacagtgggctccattgcaatggaagcatcgcaagtcgccgatcttggaaaagatcggcacgcacttggatggaagtctagcagcaaagcagccggtctcttgcactgttcgcaggtcgttctga</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0673400, RefSeq:Os04g0673400