Os05g0107300

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Revision as of 10:03, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os05g0107300| Description = Conserved hypothetical protein| Version = NM_001060959.1 GI:115461648 GeneID:4337571| Length = 8428 bp| Definition ...")
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Gene Name

Os05g0107300

Description

Conserved hypothetical protein

Version

NM_001060959.1 GI:115461648 GeneID:4337571

Length

8428 bp

Definition

Oryza sativa Japonica Group Os05g0107300, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 5

Location

Chromosome 5:389137..397564

Sequence Coding Region

389361..389602,389730..389943,390990..391279,391771..391947,392092..392868
,392959..393032,393144..393206,393306..393394,393493..393588
,393706..394365,395000..395074,395809..395879,395965..396022
,396287..396491,396587..396637,396766..397256

Expression

GEO Profiles:Os05g0107300

Genome Context

<gbrowseImage1> name=NC_008398:389137..397564 source=RiceChromosome05 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008398:389137..397564 source=RiceChromosome05 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggccggaaccctccgcgaccccagcgccgggtcgggcggcgaagcggcgcccactcctcctcctcctcccgtggccgcgcccttcgcccagtacctctcgctggaacctcttggctgggtggagcccaagcactcgcgccacggcgagctcaggagggcgctccagcaccaggcggacgacaagccccaagagctcaggcggatccgctccagcgtagccgactcctcctccaaggccagggagaaggtgaggtcaatgcaggaggcggtgcagaaggtggacaggtgcaggaacgtgctcaatcggaagcgccagaggagtgagcctgctgctgctgctgctgctggggctgaaaagccctctggttccggtgcactcaggattggagcccagaacagcaactcttctgcggtcatgagcaagcgtgtccgctcctcgctggcggatggacggttggaaggacgcagtaatatttctacaaggcaaagccctttagttaataatgagaaaagctcacttgtggagaaggaaaaaagttgtggacgaacatctgggctgtccgaagacaaattacagggtttatctactggaggtgaaggttgggagaaaaaattgaaacgcaagcgctccattggaacagtgcttaacagaggcaatgatgctgatcgagatgttaaatccgggggtcaacacagaccagccaatgaagcaaacccacgacctagtgatggtccttcacatagacatggagcatctgccgtagaatatgcaggtagcaggatggatggaagttctcagcagaatagcaactcatcccgtattctatgcaagacagatatggatcatgccactctgccaaatgaaagaagagagcggtatgttggaattgaaaaggagcggggtatggtaaaaggaaacagagcacaagcttctgaagatatgcaaactggaagcatcagtcctttgcccaaggctaaagcatgcagggcaccgagaaccggttcacacggcatgggttcagcttctagtttccaacgttcaactggaggaagcgacgaatgggaagaaataccatactcaaataaagcatcacttttgggaggcatgacaaaccgcaaacgttccatacattcaaatgcttcttcacctcctattgcttgggtcggtcaacgtccacagaaaatgtcacggacaagacgagcaaacgttgtttctccggtctcaaattttgatgaagtcctatctgaaggatcaccacttgatacagctattgctgctaaaccaacatctacagagtcctgcggtgttgtgcttacaaaaaagggaactagtagcaatacacaaatggcaaacacaatgaatgatatcccttctcctgttggattgtcagaaagtgagggatcagctgttaaagaacgcaaggtcaaggagaaagctacaaacaatggtgaggtggagaacgaggctgcaaatctagtccgtaattcagcaggatcaatagtttcatcaaacaaaaatacgattcctttgaaagaagagcttcaagatggtggtgtccgtcgtcaagggaggagtggcagaggtactatgcatgttaaagagtactcttcctcttccatatcgaaagaaaaattagatgctgcagagacaagaaagccaaacaaaggtgggcgacctggatctgaaaagaatgaaagtaaggtggggcgtcccacaatgaagaaaggttctgatcaaaacaatttgtcatgtttccctcaggctcttaattgtgaacacacagatgaccgagaagaacttttagctgctgtaaatgctgctcgcggcgctattgttggtgcatattgtggcccattttggaagaaaatggaacccatgctaactttcataagctctgaaaatttgtctttcttaaaaaaacagattgacattgttgaagagcttgatttgggcatgtcttgcgtgcctgatggtgaatatgttttagcacccaccaattacagcaggcagcaaacgacggagttttcatgtcaggagctagttccatctaattcgtctatcttacctgagcaaagcgaaaccaatggagttggattaaaaggaactattgactgtttttctcctagtgaggaaaaccaacaccatgtaccacaaaagatagaagctgacaaatggtttcatgagatggtcccaatggaacacagactcctttcagctatagttatggaagaggacatctcggaacccaatgttgtacaaagggatatactttttgaattttctaatagccatgttccttgcgctgcaagcagattcttaggaaatgaacttcaggctagtgccatatcatctaattttggattgagtgttgatttcatgaactcaaacaattcttcggttgtacatcaaagcctgagcaatgggttcacatcttccagcagtttcatcagttcaagtagtcaaagttcagtccataatgataatttgtctgatgaagtcaatttcgtataccctgaaaatggcccttttgataacttgataccgcagacttcttcactacgtcaaaagccaggaaaaaacttctcttcatctccacatgaataccaatatggacagatgtctgtgaatgataagattttcatcgagcttcaaagtattggcattttcccggaggcagtgccaaagctagatgatggagaggacaataacatcaataaaatgatttcagagttgaggaaaaggctgcatgatcaggtgaagcaaaagaaatgtaaattaagtaagttagagaaagcaattcaagatacaaaaagtatcgaggagaggagcttggagcaacatgcaatgaataaattggttgaaagggcataccgaaaacttaagggtgggcgaactggttctagtcacaaggctggtgctagtaagtctgccagcaaggctgcaaaacagcttgctttggattttgccaagcgtactctcttgcggtgccaaaaatttgaggaaacaaagaaaagctgcttcagtgagccttccctttggagtgttctatctgcgcccttgccaagcagcggcacaaaatctacagaaggcgtagagagactgaagcatcaaaagcaagacagaagtactttaaatcatggtggcacaaaatggaacaagtgtgatagggaaagggaacacagcagagatgcatctgccaagggttctggtacgaagtcagggcgtcattcatcaggcagtgggaggagtggtgaacgtaaaaacaagacaaagccgaagcaaaagatagtacagctattatcgacttctggaaatgttcttgatagagctgtggagtcggttccaacaccggcaatgcaggagccccctcgaccgtcagttcctctgggtgcaaaaattacccagcaaccaaggaaccatcctgagaatgctgcttcacgattgccggaggctcccctgaccaatttgcctggattatttgatatatttgctggaacagaagggcttggcgaacagggcaacgatatcagttcttggcttactgatgatcttgatgtaccacaagactttgatctttcaggcgccttagaaatcccactggacgacattgctgagctgggttttatgtaa</cdnaseq>

Protein Sequence

<aaseq>MAGTLRDPSAGSGGEAAPTPPPPPVAAPFAQYLSLEPLGWVEPK HSRHGELRRALQHQADDKPQELRRIRSSVADSSSKAREKVRSMQEAVQKVDRCRNVLN RKRQRSEPAAAAAAGAEKPSGSGALRIGAQNSNSSAVMSKRVRSSLADGRLEGRSNIS TRQSPLVNNEKSSLVEKEKSCGRTSGLSEDKLQGLSTGGEGWEKKLKRKRSIGTVLNR GNDADRDVKSGGQHRPANEANPRPSDGPSHRHGASAVEYAGSRMDGSSQQNSNSSRIL CKTDMDHATLPNERRERYVGIEKERGMVKGNRAQASEDMQTGSISPLPKAKACRAPRT GSHGMGSASSFQRSTGGSDEWEEIPYSNKASLLGGMTNRKRSIHSNASSPPIAWVGQR PQKMSRTRRANVVSPVSNFDEVLSEGSPLDTAIAAKPTSTESCGVVLTKKGTSSNTQM ANTMNDIPSPVGLSESEGSAVKERKVKEKATNNGEVENEAANLVRNSAGSIVSSNKNT IPLKEELQDGGVRRQGRSGRGTMHVKEYSSSSISKEKLDAAETRKPNKGGRPGSEKNE SKVGRPTMKKGSDQNNLSCFPQALNCEHTDDREELLAAVNAARGAIVGAYCGPFWKKM EPMLTFISSENLSFLKKQIDIVEELDLGMSCVPDGEYVLAPTNYSRQQTTEFSCQELV PSNSSILPEQSETNGVGLKGTIDCFSPSEENQHHVPQKIEADKWFHEMVPMEHRLLSA IVMEEDISEPNVVQRDILFEFSNSHVPCAASRFLGNELQASAISSNFGLSVDFMNSNN SSVVHQSLSNGFTSSSSFISSSSQSSVHNDNLSDEVNFVYPENGPFDNLIPQTSSLRQ KPGKNFSSSPHEYQYGQMSVNDKIFIELQSIGIFPEAVPKLDDGEDNNINKMISELRK RLHDQVKQKKCKLSKLEKAIQDTKSIEERSLEQHAMNKLVERAYRKLKGGRTGSSHKA GASKSASKAAKQLALDFAKRTLLRCQKFEETKKSCFSEPSLWSVLSAPLPSSGTKSTE GVERLKHQKQDRSTLNHGGTKWNKCDREREHSRDASAKGSGTKSGRHSSGSGRSGERK NKTKPKQKIVQLLSTSGNVLDRAVESVPTPAMQEPPRPSVPLGAKITQQPRNHPENAA SRLPEAPLTNLPGLFDIFAGTEGLGEQGNDISSWLTDDLDVPQDFDLSGALEIPLDDI AELGFM</aaseq>

Gene Sequence

<dnaseqindica>225..466#594..807#1854..2143#2635..2811#2956..3732#3823..3896#4008..4070#4170..4258#4357..4452#4570..5229#5864..5938#6673..6743#6829..6886#7151..7355#7451..7501#7630..8120#gtgcgatttcttcttcttcgtgttgttgcattgcaattgcaccccacccccatctccccctctcgcctcgcgcgagatcaatcgagaccccgccggcgaatccctcgccggagcggcgcagcgcctccgcctccgcctccgcgcgattaattccggcaaccgcggagtccttcgcccgcgctcgccgcatttcatgccctaggaggctgccgtctcggccccccatggccggaaccctccgcgaccccagcgccgggtcgggcggcgaagcggcgcccactcctcctcctcctcccgtggccgcgcccttcgcccagtacctctcgctggaacctcttggctgggtggagcccaagcactcgcgccacggcgagctcaggagggcgctccagcaccaggcggacgacaagccccaagagctcaggcggatccgctccagcgtagccgactcctcctccaaggccaggtactccaaaccctcctccacattgcaatcccctctcaattcctcaattttgccagacacagtgtacacagtgtcagttaattcgactcgattttaatttgtggtggtgttgcatcgagtcgagtagggagaaggtgaggtcaatgcaggaggcggtgcagaaggtggacaggtgcaggaacgtgctcaatcggaagcgccagaggagtgagcctgctgctgctgctgctgctggggctgaaaagccctctggttccggtgcactcaggattggagcccagaacagcaactcttctgcggtcatgagcaagcgtgtccgctcctcgctggcggatggacgggttcgtgtgctttctccattgctcgcgtcgccatctctgtttaactctactatacattaattgtgcttgctccaatcaaaatcatgtattacattggggtagtcgtagtcactgtgtgagtttgggggtattcaaaaccaccgtaagctcatcaactacttgcatgtctggcgagcgcgattccgtgacctgagcgtcgcatgttagcagttggtgcaaatgggttggatggaaaccagaaccaacagccctatcttgtattgattccccttggagtttgaaatgtggggtgtcaacattggtttggtttgataatcctgaatgtctttactcacttatggcctcaacgtattgttttcaatttgcaacaatattagatgtaatgtataggttgagttcactatggtagtctttacagtcctgatcttccttataatgtgtagcttaaacatgtagtaccttttgttctgctaaagtgctgaactgctagtccctggcttcgtgccatctgcactgccctaccattattcttggttatttagtggtggaaatcatttaaattccagttaactttattagttgagatattgaatgatgggatgattgcataataaaccacacagttatcccagaagaccatacagtacaagggtgtgcaggcggtgattgtgctttaattcaccactgaataacctatatttgctatcagaccttgaatctctctgactaatttaatcattacataattcacacacagtcctcaaacttgaaccaaaccgcaaacttgctagtttcctaagggtaggcttggtctgtgaataatgggttcctggcactgactgaacaaatatatctgatatttttaattactgtggcccagcacatttcagtgccagaagacatctaaaacctcaagttctaaaagacacttgttgtcttctgcattttatacaacttctataatagattatttccatgtatccatattccctgtgacacgatttgccatttttcagaacttatttcattatatgtgcatatttcagttggaaggacgcagtaatatttctacaaggcaaagccctttagttaataatgagaaaagctcacttgtggagaaggaaaaaagttgtggacgaacatctgggctgtccgaagacaaattacagggtttatctactggaggtgaaggttgggagaaaaaattgaaacgcaagcgctccattggaacagtgcttaacagaggcaatgatgctgatcgagatgttaaatccgggggtcaacacagaccagccaatgaagcaaacccacgacctagtgatggtccttcacataggtaatcatgtcagtgtgcttaccattattcttgttccttcaatatggacataagtttttttttttgtgacagaccagccatgttcaactttctctcaggcgattagtctaattgaataccaaacttaagctcaatagtctggaaattactcacaaataattaggtgaatgagttctctactaattgagcggtagtacactgaattgaatagggaacggggctgacatgcactacattgttaagtcaaacattggttctattactatatatatgcccctcatcagaagactggttttgagattttatttttgacctctaccttgggctgatctgctgtttattttgtttggcccatgtagattgtattaagctgcaattgaatatatgctgtttatgtttccacttttaatcctcttccagaactatatgtggttatttgatctgttccagcttattgtctctactcacccttctttatccttacattgcagacatggagcatctgccgtagaatatgcaggtagcaggatggatggaagttctcagcagaatagcaactcatcccgtattctatgcaagacagatatggatcatgccactctgccaaatgaaagaagagagcggtatgttggaattgaaaaggagcggggtatggtaaaaggaaacaggtaagcacagttcattacttcattctggcgtatacccatagaattcctctcctcatagtttacaattattgttttttatatatgtgtgaatgagcagtacaatgctatcattgttctaatgatctgctaactctacatgtatagagcacaagcttctgaagatatgcaaactggaagcatcagtcctttgcccaaggctaaagcatgcagggcaccgagaaccggttcacacggcatgggttcagcttctagtttccaacgttcaactggaggaagcgacgaatgggaagaaataccatactcaaataaagcatcacttttgggaggcatgacaaaccgcaaacgttccatacattcaaatgcttcttcacctcctattgcttgggtcggtcaacgtccacagaaaatgtcacggacaagacgagcaaacgttgtttctccggtctcaaattttgatgaagtcctatctgaaggatcaccacttgatacagctattgctgctaaaccaacatctacagagtcctgcggtgttgtgcttacaaaaaagggaactagtagcaatacacaaatggcaaacacaatgaatgatatcccttctcctgttggattgtcagaaagtgagggatcagctgttaaagaacgcaaggtcaaggagaaagctacaaacaatggtgaggtggagaacgaggctgcaaatctagtccgtaattcagcaggatcaatagtttcatcaaacaaaaatacgattcctttgaaagaagagcttcaagatggtggtgtccgtcgtcaagggaggagtggcagaggtactatgcatgttaaagagtactcttcctcttccatatcgaaagaaaaattagatgctgcagagacaagaaagccaaacaaaggtgggcgacctggatctgaaaagaatgaaaggtactcatgcttccttttggtaagggttggcaacttgctgcattttactttcgatgtagaactgatttgattctttaaacgtctgtacagtaaggtggggcgtcccacaatgaagaaaggttctgatcaaaacaatttgtcatgtttccctcaggctcttaattgtgagtctagacatctaaagattttctgaaacgcttatctatgtactttggccgtttacattaaattttggcattagcttatatatcttactaactagtggtgcaatgcaggtgaacacacagatgaccgagaagaacttttagctgctgtaaatgctgctcgcggcgctattggtgtgtatacagtcttatctgatttttgcctgatgaactttgtcagcatctctttggattgacactttatacctttcttattcccttttttttgtgcagttggtgcatattgtggcccattttggaagaaaatggaacccatgctaactttcataagctctgaaaatttgtctttcttaaaaaaacaggttggtacccagtatgcttctgatgtgtcatgatgattgactacttatttccttgttggattgggatggattctcacttattgagagtttgtggacagattgacattgttgaagagcttgatttgggcatgtcttgcgtgcctgatggtgaatatgttttagcacccaccaattacagcaggcagcaaacgacggtatgttactttttgtgccattagctatttgaagagagggaaatctttccctcctttcatgcaattcatctctcatggagtgtgtatccttacatcgcatgtcccaaaaatctgcaggagttttcatgtcaggagctagttccatctaattcgtctatcttacctgagcaaagcgaaaccaatggagttggattaaaaggaactattgactgtttttctcctagtgaggaaaaccaacaccatgtaccacaaaagatagaagctgacaaatggtttcatgagatggtcccaatggaacacagactcctttcagctatagttatggaagaggacatctcggaacccaatgttgtacaaagggatatactttttgaattttctaatagccatgttccttgcgctgcaagcagattcttaggaaatgaacttcaggctagtgccatatcatctaattttggattgagtgttgatttcatgaactcaaacaattcttcggttgtacatcaaagcctgagcaatgggttcacatcttccagcagtttcatcagttcaagtagtcaaagttcagtccataatgataatttgtctgatgaagtcaatttcgtataccctgaaaatggcccttttgataacttgataccgcagacttcttcactacgtcaaaagccaggaaaaaacttctcttcatctccacatgaataccaatatggacagatgtctgtgaatgataagattttcatcgagcttcaaagtattggcattttcccggaggcagtggtatggttacttaaaactctgcatttctggggaaagtatctgcatcgcaatacttcagttctgctttctgcagttcttttaagtctgtatgccaaaatttcaggaaacttgttaaaatttaaaagtagcaactttgtaattgacaaaattttagcaactttgatggtgattatagtttttctctttctttaatgttgcatctatttaccctgccatccttccttatgtggtttatgcatagaattattttttgtcggacagtgtgaatctcatcatgagcaagataaaggttaaagtgggaagctgtgctatatggttgttatttgtcatagtttaaggaatcttgtaaagtagccatcaacactgatgatttctgaatgatattcagttctttatcagttaagcctaaacattggtagtcacagtatgcagtcactatactctgttagttatccatgaaaaagaatctataggattgtatttagtgcacaagtgttatttatttctggtgactaatgtcattttctgttgcattctttgtaaaatcttttcacaggatgttgaagtttatgtaattacctagtaaattcctattgtgattcttgtcttatcttgcaaatactacccttttcagccaaagctagatgatggagaggacaataacatcaataaaatgatttcagagttgaggaaaaggctgcatgatcaggttacatcaacaaccactcctagtattatgtcctcaactctaattatatctggatgcttaccttattactcttatactcatctattattttacaatgattgcgttagatccttgtaaaatgtaaaccatcaaaatatttgtcatattactgaaacttgttttgttctaaggacttcttttccaaaatatttcttgaaacacgtggacaatttgtgaagttggcttgcccatcttgtatcaacatgtgctagaagtataggagccatgaaaattatgcattaagtgacatcaattggcatgggaaaatatagattgagaatgtgccatcgattattttctgggataactatcagatgttatttgaatgccatcgtactttgattaattcctgcttgtaatgctggtagcgtcacagccgcttgaccagattggaatagtatatatcaaggtgacaaggtaggctgccagatcactataagatgaaagggtatatatgcaaagtggaataattcaaataagtcatttaaaaaattccaatgactggctctaagccagtaaaccttctagatttaagccagtaaaccttctagattcaacctactggctaaggccgatgatccttgttatcctgttttgagatcagttcatgtattactatattctggaagattaaaatacttttatgattttcactttacctcttatttatgtatatcaaaatggtaccattgcaggtgaagcaaaagaaatgtaaattaagtaagttagagaaagcaattcaagatacaaaaagtatcgaggagaggtatggattttatgttcttggattagatcttagaggcttagtgcattgagttgcttcactggctaacattaagattttctgtcaggagcttggagcaacatgcaatgaataaattggttgaaagggcataccgaaaacttaaggtagtataaacttatctctacatgattggtttttcaatgttatgttggactacttgttcttctaaaatccaagttcccttaatagttatgcaaagttaatcagttgagtcatagatatttttttatttctttattaatccttgtgaggtcaacccatgttgatgatgccttctaattgcaatatttttgttccagcaaaaagaaagggtaatgcagatgaaaactgtttgacttggacactgactgtatctttatgaattgtagggtgggcgaactggttctagtcacaaggctggtgctagtaagtctgccagcaaggctgcaaaacagcttgctttggattttgccaagcgtactctcttgcggtgccaaaaatttgaggaaacaaagaaaagctgcttcagtgagccttccctttggagtgttctatctgcgcccttgccaagcagcggcacaaaatctacagaaggtaatacatgtgcaactttgataagagagattagtatgcatttttttctgcccaatcaaatataatttcatgccttctttcgttctggtattaaggcgtagagagactgaagcatcaaaagcaagacagaagtactttaaatcatggtaattcttacgctccttgttagggccctaggggaatcatgagggaaaatttacaaggtgctatttgcagtactagaagtccactcgtgcttcataaactaatcaatttgtcctttatccgtttttaggtggcacaaaatggaacaagtgtgatagggaaagggaacacagcagagatgcatctgccaagggttctggtacgaagtcagggcgtcattcatcaggcagtgggaggagtggtgaacgtaaaaacaagacaaagccgaagcaaaagatagtacagctattatcgacttctggaaatgttcttgatagagctgtggagtcggttccaacaccggcaatgcaggagccccctcgaccgtcagttcctctgggtgcaaaaattacccagcaaccaaggaaccatcctgagaatgctgcttcacgattgccggaggctcccctgaccaatttgcctggattatttgatatatttgctggaacagaagggcttggcgaacagggcaacgatatcagttcttggcttactgatgatcttgatgtaccacaagactttgatctttcaggcgccttagaaatcccactggacgacattgctgagctgggttttatgtaagtaaggaaacgaaccaattgttctttatcctgcgccgtgaatatgtggggagtttggacatgatgttagtaggtttaccctacctaatgggtataagtagagttaaccgattgttttctctgcctcaatctggcaagagctttaagtgtttaactaggttggtcggtcgttttttatctcattgaactgttgatagccgctaggtaaacttattggcagaagaagacgaggtattctattgattcctcgtgattgtgctgagtttatcaacttgtgaatatgaatgagcttggttcgttgccaattgg</dnaseqindica>

External Link(s)

NCBI Gene:Os05g0107300, RefSeq:Os05g0107300